RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 KRTAP4-3Q9BYR4 195 aa6.23□□□□□ -1.41
PCF11-206ENST00000533018 KRTAP4-12Q9BQ66 201 aa6.2□□□□□ -1.42
PCF11-206ENST00000533018 AHNAK2Q8IVF2 5795 aa6.18□□□□□ -1.42
PCF11-206ENST00000533018 KRTAP5-4Q6L8H1 288 aa6.11□□□□□ -1.43
PCF11-206ENST00000533018 PRR15LQ9BU68 103 aa6.09□□□□□ -1.43
PCF11-206ENST00000533018 ANAPC13Q9BS18 74 aa6.06□□□□□ -1.44
PCF11-206ENST00000533018 KRTAP9-9Q9BYP9 154 aa6.06□□□□□ -1.44
PCF11-206ENST00000533018 KRTAP9-4Q9BYQ2 154 aa6.06□□□□□ -1.44
PCF11-206ENST00000533018 KRTAP4-7Q9BYR0 210 aa6.03□□□□□ -1.44
PCF11-206ENST00000533018 KRTAP12-3P60328 96 aa6.01□□□□□ -1.45
PCF11-206ENST00000533018 KRTAP5-10Q6L8G5 202 aa5.98□□□□□ -1.45
PCF11-206ENST00000533018 CCDC179H3BU77 68 aa5.93□□□□□ -1.46
PCF11-206ENST00000533018 LINC01558Q9Y6Z2 57 aa5.93□□□□□ -1.46
PCF11-206ENST00000533018 ATP5EP56381 51 aaPredicted RBP5.91□□□□□ -1.46
PCF11-206ENST00000533018 UQCR11O14957 56 aa5.86□□□□□ -1.47
PCF11-206ENST00000533018 KRTAP20-2Q3LI61 65 aa5.82□□□□□ -1.48
PCF11-206ENST00000533018 KRTAP5-3Q6L8H2 238 aa5.82□□□□□ -1.48
PCF11-206ENST00000533018 KRTAP5-5Q701N2 237 aaPredicted RBP5.79□□□□□ -1.48
PCF11-206ENST00000533018 KRTAP5-7Q6L8G8 165 aa5.77□□□□□ -1.49
PCF11-206ENST00000533018 KRTAP12-4P60329 112 aa5.76□□□□□ -1.49
PCF11-206ENST00000533018 KRTAP25-1Q3LHN0 102 aa5.76□□□□□ -1.49
PCF11-206ENST00000533018 SPRR5A0A1B0GTR4 108 aa5.75□□□□□ -1.49
PCF11-206ENST00000533018 MIR22HGQ0VDD5 57 aa5.71□□□□□ -1.5
PCF11-206ENST00000533018 SYNE1Q8NF91 8797 aaKnown RBP5.69□□□□□ -1.5
PCF11-206ENST00000533018 K7ERS5 55 aa5.69□□□□□ -1.5
PCF11-206ENST00000533018 PCP4P48539 62 aa5.68□□□□□ -1.5
PCF11-206ENST00000533018 TMEM258P61165 79 aa5.68□□□□□ -1.5
PCF11-206ENST00000533018 KRTAP19-4Q3LI73 84 aa5.6□□□□□ -1.51
PCF11-206ENST00000533018 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
PCF11-206ENST00000533018 LCE3CQ5T5A8 94 aa5.52□□□□□ -1.53
PCF11-206ENST00000533018 PSPHP1O15172 72 aa5.51□□□□□ -1.53
PCF11-206ENST00000533018 KRTAP4-2Q9BYR5 136 aa5.51□□□□□ -1.53
PCF11-206ENST00000533018 KRTAP23-1A1A580 65 aa5.5□□□□□ -1.53
PCF11-206ENST00000533018 V9GYY9 64 aa5.45□□□□□ -1.54
PCF11-206ENST00000533018 KRTAP4-11Q9BYQ6 195 aa5.41□□□□□ -1.54
PCF11-206ENST00000533018 Q1T7F1 81 aa5.37□□□□□ -1.55
PCF11-206ENST00000533018 MT1AP04731 61 aa5.36□□□□□ -1.55
PCF11-206ENST00000533018 KRTAP6-1Q3LI64 71 aa5.36□□□□□ -1.55
PCF11-206ENST00000533018 CDC42SE1Q9NRR8 79 aa5.33□□□□□ -1.56
PCF11-206ENST00000533018 A6NED7 52 aa5.31□□□□□ -1.56
PCF11-206ENST00000533018 KRTAP5-2Q701N4 177 aa5.31□□□□□ -1.56
PCF11-206ENST00000533018 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
PCF11-206ENST00000533018 RPS28P62857 69 aaKnown RBP5.28□□□□□ -1.56
PCF11-206ENST00000533018 ROMO1P60602 79 aa5.21□□□□□ -1.58
PCF11-206ENST00000533018 H3BS24 57 aa5.19□□□□□ -1.58
PCF11-206ENST00000533018 KRTAP9-6A8MVA2 160 aa5.17□□□□□ -1.58
PCF11-206ENST00000533018 KRTAP5-8O75690 187 aa5.17□□□□□ -1.58
PCF11-206ENST00000533018 KRTAP6-2Q3LI66 62 aa5.17□□□□□ -1.58
PCF11-206ENST00000533018 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
PCF11-206ENST00000533018 MUC5BQ9HC84 5762 aaPredicted RBP5.14□□□□□ -1.59
PCF11-206ENST00000533018 MUC5ACP98088 5654 aa5.11□□□□□ -1.59
PCF11-206ENST00000533018 MT3P25713 68 aa4.94□□□□□ -1.62
PCF11-206ENST00000533018 KRTAP5-1Q6L8H4 278 aa4.82□□□□□ -1.64
PCF11-206ENST00000533018 BRK1Q8WUW1 75 aa4.69□□□□□ -1.66
PCF11-206ENST00000533018 PRO0628Q9UI54 55 aa4.6□□□□□ -1.67
PCF11-206ENST00000533018 LCE1EQ5T753 118 aa4.54□□□□□ -1.68
PCF11-206ENST00000533018 PMAIP1Q13794 54 aa4.46□□□□□ -1.7
PCF11-206ENST00000533018 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
PCF11-206ENST00000533018 KTN1-AS1Q86SY8 53 aa4.28□□□□□ -1.72
PCF11-206ENST00000533018 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
PCF11-206ENST00000533018 PRAC1Q96KF2 57 aa4.06□□□□□ -1.76
PCF11-206ENST00000533018 SVIPQ8NHG7 77 aa4.05□□□□□ -1.76
PCF11-206ENST00000533018 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
PCF11-206ENST00000533018 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
PCF11-206ENST00000533018 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
PCF11-206ENST00000533018 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
PCF11-206ENST00000533018 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
PCF11-206ENST00000533018 PHGR1C9JFL3 82 aa3.54□□□□□ -1.84
PCF11-206ENST00000533018 LUZP6Q538Z0 58 aa3.52□□□□□ -1.85
PCF11-206ENST00000533018 KRTAP21-2Q3LI59 83 aa3.5□□□□□ -1.85
PCF11-206ENST00000533018 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
PCF11-206ENST00000533018 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
PCF11-206ENST00000533018 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
PCF11-206ENST00000533018 A0A0A0MQY5 61 aa2.98□□□□□ -1.93
PCF11-206ENST00000533018 INE1O15225 51 aa2.82□□□□□ -1.96
PCF11-206ENST00000533018 KRTAP21-1Q3LI58 79 aa2.67□□□□□ -1.98
PCF11-206ENST00000533018 PRM1P04553 51 aa2.66□□□□□ -1.98
PCF11-206ENST00000533018 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 64.7 ms