RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 VPS13CQ709C8 3753 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 SPTBN4Q9H254 2564 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 CFAP46Q8IYW2 2715 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 CHD6Q8TD26 2715 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 KIAA1109Q2LD37 5005 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 LRBAP50851 2863 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 WDR87Q6ZQQ6 2873 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 NSD1Q96L73 2696 aaPredicted RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 KMT2CQ8NEZ4 4911 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 EPPK1P58107 5090 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 COL6A5A8TX70 2615 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 ATRQ13535 2644 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 TEP1Q99973 2627 aaKnown RBP0.17□□□□□ -2.38
VPS50-219ENST00000495039 UNC79Q9P2D8 2635 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 LRP1Q07954 4544 aaKnown RBP0.17□□□□□ -2.38
VPS50-219ENST00000495039 ITPR1Q14643 2758 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 CELSR2Q9HCU4 2923 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 EPG5Q9HCE0 2579 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 ZNF292O60281 2723 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 FSIP2Q5CZC0 6907 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 DMXL1Q9Y485 3027 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 NIPBLQ6KC79 2804 aaeCLIP0.17□□□□□ -2.38
VPS50-219ENST00000495039 VPS13BQ7Z7G8 4022 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 FLNBO75369 2602 aaKnown RBP0.17□□□□□ -2.38
VPS50-219ENST00000495039 UBR5O95071 2799 aaPredicted RBP0.17□□□□□ -2.38
VPS50-219ENST00000495039 MT1AP04731 61 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 MT4P47944 62 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP20-1Q3LI63 56 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP19-7Q3SYF9 63 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 IGSF10Q6WRI0 2623 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 OTOGQ6ZRI0 2925 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 CEP295Q9C0D2 2601 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 LRP2P98164 4655 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 PKHD1L1Q86WI1 4243 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 SETD2Q9BYW2 2564 aaPredicted RBP0.17□□□□□ -2.38
VPS50-219ENST00000495039 STAB1Q9NY15 2570 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 DNAH6Q9C0G6 4158 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 TNXBP22105 4242 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 DCHS2Q6V1P9 2916 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 UBR4Q5T4S7 5183 aa0.17□□□□□ -2.38
VPS50-219ENST00000495039 STAB2Q8WWQ8 2551 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 HMCN2Q8NDA2 5059 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 CMYA5Q8N3K9 4069 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 NBEAL1Q6ZS30 2694 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 DNAH7Q8WXX0 4024 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 SYNE1Q8NF91 8797 aaKnown RBP0.16□□□□□ -2.38
VPS50-219ENST00000495039 NBEAQ8NFP9 2946 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 DSPP15924 2871 aaKnown RBP0.16□□□□□ -2.38
VPS50-219ENST00000495039 ITPR2Q14571 2701 aa0.16□□□□□ -2.38
VPS50-219ENST00000495039 SETXQ7Z333 2677 aaKnown RBP0.16□□□□□ -2.38
VPS50-219ENST00000495039 RNF213Q63HN8 5207 aa0.15□□□□□ -2.38
VPS50-219ENST00000495039 NF1P21359 2839 aa0.15□□□□□ -2.38
VPS50-219ENST00000495039 PKD1L1Q8TDX9 2849 aa0.15□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP6-1Q3LI64 71 aa0.15□□□□□ -2.39
VPS50-219ENST00000495039 KRTAP6-2Q3LI66 62 aa0.15□□□□□ -2.39
VPS50-219ENST00000495039 CENPEQ02224 2701 aa0.15□□□□□ -2.39
VPS50-219ENST00000495039 HRNRQ86YZ3 2850 aaPredicted RBP0.15□□□□□ -2.39
VPS50-219ENST00000495039 VWFP04275 2813 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 HECTD4Q9Y4D8 3996 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 MUC2Q02817 5179 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 TGP01266 2768 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 PRM1P04553 51 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 LYSTQ99698 3801 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 MXRA5Q9NR99 2828 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 ZANQ9Y493 2812 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 COL7A1Q02388 2944 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 PKHD1P08F94 4074 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 FLNCQ14315 2725 aa0.14□□□□□ -2.39
VPS50-219ENST00000495039 USH2AO75445 5202 aa0.13□□□□□ -2.39
VPS50-219ENST00000495039 GCN1Q92616 2671 aaKnown RBP0.13□□□□□ -2.39
VPS50-219ENST00000495039 SSPOA2VEC9 5147 aa0.13□□□□□ -2.39
VPS50-219ENST00000495039 KRTAP20-2Q3LI61 65 aa0.13□□□□□ -2.39
VPS50-219ENST00000495039 MACF1Q9UPN3 7388 aaKnown RBP0.13□□□□□ -2.39
VPS50-219ENST00000495039 SRRM2Q9UQ35 2752 aaKnown RBP0.13□□□□□ -2.39
VPS50-219ENST00000495039 DSTQ03001 7570 aaKnown RBP0.12□□□□□ -2.39
VPS50-219ENST00000495039 FLGP20930 4061 aaPredicted RBP0.11□□□□□ -2.39
VPS50-219ENST00000495039 NEBP20929 6669 aa0.1□□□□□ -2.39
VPS50-219ENST00000495039 MUC12Q9UKN1 5478 aa0.1□□□□□ -2.39
Retrieved 78 of 20,778 RNA–protein pairs in 96.7 ms