RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ATP5EP56381 51 aaPredicted RBP2.82□□□□□ -1.96
VPS52-219ENST00000493379 MT1XP80297 61 aa2.82□□□□□ -1.96
VPS52-219ENST00000493379 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
VPS52-219ENST00000493379 PLAC4Q8WY50 150 aa2.81□□□□□ -1.96
VPS52-219ENST00000493379 KRTAP13-4Q3LI77 160 aa2.79□□□□□ -1.96
VPS52-219ENST00000493379 PRO2289Q9P1D8 64 aa2.79□□□□□ -1.96
VPS52-219ENST00000493379 TMEM258P61165 79 aa2.78□□□□□ -1.96
VPS52-219ENST00000493379 KRTAP12-2P59991 146 aa2.77□□□□□ -1.97
VPS52-219ENST00000493379 SERP1Q9Y6X1 66 aa2.77□□□□□ -1.97
VPS52-219ENST00000493379 A0A1B0GU33 70 aa2.75□□□□□ -1.97
VPS52-219ENST00000493379 LINC01554Q52M75 96 aa2.75□□□□□ -1.97
VPS52-219ENST00000493379 V9GYY9 64 aa2.75□□□□□ -1.97
VPS52-219ENST00000493379 KRTAP5-11Q6L8G4 156 aa2.74□□□□□ -1.97
VPS52-219ENST00000493379 LINC01558Q9Y6Z2 57 aa2.74□□□□□ -1.97
VPS52-219ENST00000493379 PSPHP1O15172 72 aa2.73□□□□□ -1.97
VPS52-219ENST00000493379 A0A1B0GU69 56 aa2.72□□□□□ -1.97
VPS52-219ENST00000493379 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
VPS52-219ENST00000493379 AHNAKQ09666 5890 aaKnown RBP2.7□□□□□ -1.98
VPS52-219ENST00000493379 SPATA8Q6RVD6 105 aa2.7□□□□□ -1.98
VPS52-219ENST00000493379 MT4P47944 62 aa2.69□□□□□ -1.98
VPS52-219ENST00000493379 KRTAP12-1P59990 96 aa2.68□□□□□ -1.98
VPS52-219ENST00000493379 PRR15LQ9BU68 103 aa2.67□□□□□ -1.98
VPS52-219ENST00000493379 KRTAP8-1Q8IUC2 63 aa2.65□□□□□ -1.99
VPS52-219ENST00000493379 Q1T7F1 81 aa2.64□□□□□ -1.99
VPS52-219ENST00000493379 A0A0D9SG42 100 aa2.63□□□□□ -1.99
VPS52-219ENST00000493379 RPS28P62857 69 aaKnown RBP2.63□□□□□ -1.99
VPS52-219ENST00000493379 UQCR11O14957 56 aa2.62□□□□□ -1.99
VPS52-219ENST00000493379 LUZP6Q538Z0 58 aa2.62□□□□□ -1.99
VPS52-219ENST00000493379 PRO0628Q9UI54 55 aa2.62□□□□□ -1.99
VPS52-219ENST00000493379 SPINT4Q6UDR6 99 aa2.61□□□□□ -1.99
VPS52-219ENST00000493379 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -2
VPS52-219ENST00000493379 MUC5ACP98088 5654 aa2.56□□□□□ -2
VPS52-219ENST00000493379 C10orf95Q9H7T3 257 aa2.56□□□□□ -2
VPS52-219ENST00000493379 MIR22HGQ0VDD5 57 aa2.54□□□□□ -2
VPS52-219ENST00000493379 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
VPS52-219ENST00000493379 TNP1P09430 55 aa2.5□□□□□ -2.01
VPS52-219ENST00000493379 MT1EP04732 61 aa2.49□□□□□ -2.01
VPS52-219ENST00000493379 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.49□□□□□ -2.01
VPS52-219ENST00000493379 K7ERS5 55 aa2.45□□□□□ -2.02
VPS52-219ENST00000493379 KRTAP19-5Q3LI72 72 aa2.45□□□□□ -2.02
VPS52-219ENST00000493379 KRTAP19-3Q7Z4W3 81 aa2.45□□□□□ -2.02
VPS52-219ENST00000493379 A6NED7 52 aa2.44□□□□□ -2.02
VPS52-219ENST00000493379 KRTAP25-1Q3LHN0 102 aa2.44□□□□□ -2.02
VPS52-219ENST00000493379 LCE3AQ5TA76 89 aa2.44□□□□□ -2.02
VPS52-219ENST00000493379 MT1GP13640 62 aa2.43□□□□□ -2.02
VPS52-219ENST00000493379 CDC42SE1Q9NRR8 79 aa2.41□□□□□ -2.02
VPS52-219ENST00000493379 MT1LQ93083 61 aa2.4□□□□□ -2.03
VPS52-219ENST00000493379 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
VPS52-219ENST00000493379 KRTAP12-3P60328 96 aa2.37□□□□□ -2.03
VPS52-219ENST00000493379 PP632Q6XCG6 107 aa2.36□□□□□ -2.03
VPS52-219ENST00000493379 KRTAP5-4Q6L8H1 288 aa2.35□□□□□ -2.03
VPS52-219ENST00000493379 MT1MQ8N339 61 aa2.35□□□□□ -2.03
VPS52-219ENST00000493379 ROMO1P60602 79 aa2.33□□□□□ -2.04
VPS52-219ENST00000493379 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
VPS52-219ENST00000493379 PMAIP1Q13794 54 aa2.3□□□□□ -2.04
VPS52-219ENST00000493379 KRTAP20-2Q3LI61 65 aa2.3□□□□□ -2.04
VPS52-219ENST00000493379 KRTAP4-3Q9BYR4 195 aa2.26□□□□□ -2.05
VPS52-219ENST00000493379 KRTAP5-1Q6L8H4 278 aa2.24□□□□□ -2.05
VPS52-219ENST00000493379 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
VPS52-219ENST00000493379 BRK1Q8WUW1 75 aa2.2□□□□□ -2.06
VPS52-219ENST00000493379 KTN1-AS1Q86SY8 53 aa2.19□□□□□ -2.06
VPS52-219ENST00000493379 SYNE1Q8NF91 8797 aaKnown RBP2.18□□□□□ -2.06
VPS52-219ENST00000493379 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
VPS52-219ENST00000493379 KRTAP12-4P60329 112 aa2.06□□□□□ -2.08
VPS52-219ENST00000493379 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
VPS52-219ENST00000493379 MT1AP04731 61 aa2.05□□□□□ -2.08
VPS52-219ENST00000493379 OBSCNQ5VST9 7968 aa2.03□□□□□ -2.08
VPS52-219ENST00000493379 KRTAP6-1Q3LI64 71 aa2.01□□□□□ -2.09
VPS52-219ENST00000493379 LCE1CQ5T751 118 aa1.97□□□□□ -2.09
VPS52-219ENST00000493379 LCE1BQ5T7P3 118 aa1.97□□□□□ -2.09
VPS52-219ENST00000493379 KRTAP6-2Q3LI66 62 aa1.88□□□□□ -2.11
VPS52-219ENST00000493379 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
VPS52-219ENST00000493379 INE1O15225 51 aa1.58□□□□□ -2.16
VPS52-219ENST00000493379 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
VPS52-219ENST00000493379 KRTAP21-2Q3LI59 83 aa1.38□□□□□ -2.19
VPS52-219ENST00000493379 KRTAP21-1Q3LI58 79 aa1.29□□□□□ -2.2
VPS52-219ENST00000493379 PRM1P04553 51 aa1.17□□□□□ -2.22
VPS52-219ENST00000493379 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 1555.9 ms