RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 PSPHP1O15172 72 aa8.54□□□□□ -1.04
CPNE1-223ENST00000475146 MT1MQ8N339 61 aa8.5□□□□□ -1.05
CPNE1-223ENST00000475146 Q1T7F1 81 aa8.48□□□□□ -1.05
CPNE1-223ENST00000475146 K7ERS5 55 aa8.47□□□□□ -1.05
CPNE1-223ENST00000475146 KRTAP12-3P60328 96 aa8.37□□□□□ -1.07
CPNE1-223ENST00000475146 KRTAP25-1Q3LHN0 102 aa8.35□□□□□ -1.07
CPNE1-223ENST00000475146 KRTAP4-9Q9BYQ8 210 aa8.31□□□□□ -1.08
CPNE1-223ENST00000475146 KRTAP4-3Q9BYR4 195 aa8.31□□□□□ -1.08
CPNE1-223ENST00000475146 A6NED7 52 aa8.26□□□□□ -1.09
CPNE1-223ENST00000475146 LCE4AQ5TA78 99 aa8.16□□□□□ -1.1
CPNE1-223ENST00000475146 KRTAP4-7Q9BYR0 210 aa8.16□□□□□ -1.1
CPNE1-223ENST00000475146 LCE1DQ5T752 114 aa8.13□□□□□ -1.11
CPNE1-223ENST00000475146 PCP4P48539 62 aa8.12□□□□□ -1.11
CPNE1-223ENST00000475146 RPS28P62857 69 aaKnown RBP8.1□□□□□ -1.11
CPNE1-223ENST00000475146 MT4P47944 62 aa8.09□□□□□ -1.11
CPNE1-223ENST00000475146 CDC42SE1Q9NRR8 79 aa8.02□□□□□ -1.13
CPNE1-223ENST00000475146 KRTAP23-1A1A580 65 aa8□□□□□ -1.13
CPNE1-223ENST00000475146 KRTAP5-4Q6L8H1 288 aa8□□□□□ -1.13
CPNE1-223ENST00000475146 GPR98Q8WXG9 6306 aa7.9□□□□□ -1.14
CPNE1-223ENST00000475146 HMCN1Q96RW7 5635 aa7.88□□□□□ -1.15
CPNE1-223ENST00000475146 ROMO1P60602 79 aa7.88□□□□□ -1.15
CPNE1-223ENST00000475146 KRTAP15-1Q3LI76 137 aa7.86□□□□□ -1.15
CPNE1-223ENST00000475146 KRTAP19-4Q3LI73 84 aa7.85□□□□□ -1.15
CPNE1-223ENST00000475146 KRTAP4-6Q9BYQ5 205 aa7.83□□□□□ -1.16
CPNE1-223ENST00000475146 KRTAP5-5Q701N2 237 aaPredicted RBP7.75□□□□□ -1.17
CPNE1-223ENST00000475146 LOC100996750A0A140TA64 210 aa7.72□□□□□ -1.17
CPNE1-223ENST00000475146 LCE3CQ5T5A8 94 aa7.71□□□□□ -1.18
CPNE1-223ENST00000475146 AHNAK2Q8IVF2 5795 aa7.58□□□□□ -1.2
CPNE1-223ENST00000475146 KRTAP20-2Q3LI61 65 aa7.57□□□□□ -1.2
CPNE1-223ENST00000475146 KRTAP12-4P60329 112 aa7.56□□□□□ -1.2
CPNE1-223ENST00000475146 SPRR5A0A1B0GTR4 108 aa7.53□□□□□ -1.2
CPNE1-223ENST00000475146 KRTAP5-10Q6L8G5 202 aa7.46□□□□□ -1.22
CPNE1-223ENST00000475146 SYNE1Q8NF91 8797 aaKnown RBP7.42□□□□□ -1.22
CPNE1-223ENST00000475146 KRTAP5-3Q6L8H2 238 aa7.35□□□□□ -1.23
CPNE1-223ENST00000475146 MT1AP04731 61 aa7.29□□□□□ -1.24
CPNE1-223ENST00000475146 KRTAP9-6A8MVA2 160 aa7.25□□□□□ -1.25
CPNE1-223ENST00000475146 KRTAP6-1Q3LI64 71 aa7.24□□□□□ -1.25
CPNE1-223ENST00000475146 BRK1Q8WUW1 75 aa7.2□□□□□ -1.26
CPNE1-223ENST00000475146 KRTAP5-7Q6L8G8 165 aa7.16□□□□□ -1.26
CPNE1-223ENST00000475146 KRTAP5-2Q701N4 177 aa7.04□□□□□ -1.28
CPNE1-223ENST00000475146 KRTAP9-4Q9BYQ2 154 aa7.02□□□□□ -1.29
CPNE1-223ENST00000475146 KRTAP6-2Q3LI66 62 aa6.9□□□□□ -1.3
CPNE1-223ENST00000475146 KRTAP4-11Q9BYQ6 195 aa6.88□□□□□ -1.31
CPNE1-223ENST00000475146 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
CPNE1-223ENST00000475146 MT3P25713 68 aa6.67□□□□□ -1.34
CPNE1-223ENST00000475146 KRTAP5-8O75690 187 aa6.63□□□□□ -1.35
CPNE1-223ENST00000475146 PRAC1Q96KF2 57 aa6.51□□□□□ -1.37
CPNE1-223ENST00000475146 OBSCNQ5VST9 7968 aa6.5□□□□□ -1.37
CPNE1-223ENST00000475146 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
CPNE1-223ENST00000475146 KRTAP5-1Q6L8H4 278 aa6.28□□□□□ -1.4
CPNE1-223ENST00000475146 PRO0628Q9UI54 55 aa6.27□□□□□ -1.41
CPNE1-223ENST00000475146 MUC5ACP98088 5654 aa6.17□□□□□ -1.42
CPNE1-223ENST00000475146 AHNAKQ09666 5890 aaKnown RBP6.17□□□□□ -1.42
CPNE1-223ENST00000475146 MUC5BQ9HC84 5762 aaPredicted RBP6.16□□□□□ -1.42
CPNE1-223ENST00000475146 LCE1EQ5T753 118 aa6.06□□□□□ -1.44
CPNE1-223ENST00000475146 KTN1-AS1Q86SY8 53 aa6.01□□□□□ -1.45
CPNE1-223ENST00000475146 SVIPQ8NHG7 77 aa5.84□□□□□ -1.47
CPNE1-223ENST00000475146 LCE1BQ5T7P3 118 aa5.76□□□□□ -1.49
CPNE1-223ENST00000475146 KRTAP4-2Q9BYR5 136 aa5.73□□□□□ -1.49
CPNE1-223ENST00000475146 LCE1CQ5T751 118 aa5.62□□□□□ -1.51
CPNE1-223ENST00000475146 LCE3DQ9BYE3 92 aa5.58□□□□□ -1.52
CPNE1-223ENST00000475146 LUZP6Q538Z0 58 aa5.5□□□□□ -1.53
CPNE1-223ENST00000475146 LCE3EQ5T5B0 92 aa5.28□□□□□ -1.56
CPNE1-223ENST00000475146 KRTAP4-12Q9BQ66 201 aa5.18□□□□□ -1.58
CPNE1-223ENST00000475146 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.12□□□□□ -1.59
CPNE1-223ENST00000475146 KRTAP5-11Q6L8G4 156 aa5.1□□□□□ -1.59
CPNE1-223ENST00000475146 LCE1FQ5T754 118 aa4.91□□□□□ -1.62
CPNE1-223ENST00000475146 KRTAP21-2Q3LI59 83 aa4.75□□□□□ -1.65
CPNE1-223ENST00000475146 NDUFAF8A1L188 74 aa4.44□□□□□ -1.7
CPNE1-223ENST00000475146 PHGR1C9JFL3 82 aa4.39□□□□□ -1.71
CPNE1-223ENST00000475146 KRTAP4-4Q9BYR3 166 aa4.37□□□□□ -1.71
CPNE1-223ENST00000475146 PRM1P04553 51 aa4.05□□□□□ -1.76
CPNE1-223ENST00000475146 MUC19Q7Z5P9 8384 aa4□□□□□ -1.77
CPNE1-223ENST00000475146 H3BS24 57 aa3.9□□□□□ -1.79
CPNE1-223ENST00000475146 A0A0A0MQY5 61 aa3.61□□□□□ -1.83
CPNE1-223ENST00000475146 INE1O15225 51 aa3.54□□□□□ -1.84
CPNE1-223ENST00000475146 KRTAP21-1Q3LI58 79 aa3.31□□□□□ -1.88
CPNE1-223ENST00000475146 MUC16Q8WXI7 14507 aa2.87□□□□□ -1.95
Retrieved 78 of 20,778 RNA–protein pairs in 93.1 ms