RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 Q1T7F1 81 aa5.57□□□□□ -1.52
CHD1-202ENST00000414220 KRTAP5-3Q6L8H2 238 aa5.57□□□□□ -1.52
CHD1-202ENST00000414220 PSPHP1O15172 72 aa5.54□□□□□ -1.52
CHD1-202ENST00000414220 PCP4P48539 62 aa5.51□□□□□ -1.53
CHD1-202ENST00000414220 C10orf95Q9H7T3 257 aa5.51□□□□□ -1.53
CHD1-202ENST00000414220 LCE5AQ5TCM9 118 aa5.49□□□□□ -1.53
CHD1-202ENST00000414220 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
CHD1-202ENST00000414220 RPS28P62857 69 aaKnown RBP5.45□□□□□ -1.54
CHD1-202ENST00000414220 KRTAP2-2Q9BYT5 123 aa5.45□□□□□ -1.54
CHD1-202ENST00000414220 KRTAP2-1Q9BYU5 128 aa5.45□□□□□ -1.54
CHD1-202ENST00000414220 MT1EP04732 61 aa5.44□□□□□ -1.54
CHD1-202ENST00000414220 A6NED7 52 aa5.41□□□□□ -1.54
CHD1-202ENST00000414220 KRTAP19-5Q3LI72 72 aa5.41□□□□□ -1.54
CHD1-202ENST00000414220 KRTAP19-3Q7Z4W3 81 aa5.4□□□□□ -1.54
CHD1-202ENST00000414220 LCE3AQ5TA76 89 aa5.38□□□□□ -1.55
CHD1-202ENST00000414220 KRTAP25-1Q3LHN0 102 aa5.34□□□□□ -1.55
CHD1-202ENST00000414220 PP632Q6XCG6 107 aa5.34□□□□□ -1.55
CHD1-202ENST00000414220 MT1GP13640 62 aa5.32□□□□□ -1.56
CHD1-202ENST00000414220 H3BS24 57 aa5.3□□□□□ -1.56
CHD1-202ENST00000414220 MT1LQ93083 61 aa5.23□□□□□ -1.57
CHD1-202ENST00000414220 KRTAP12-3P60328 96 aa5.22□□□□□ -1.57
CHD1-202ENST00000414220 CDC42SE1Q9NRR8 79 aa5.22□□□□□ -1.57
CHD1-202ENST00000414220 KRTAP19-4Q3LI73 84 aa5.2□□□□□ -1.58
CHD1-202ENST00000414220 MT1MQ8N339 61 aa5.18□□□□□ -1.58
CHD1-202ENST00000414220 KRTAP23-1A1A580 65 aa5.16□□□□□ -1.58
CHD1-202ENST00000414220 ROMO1P60602 79 aa5.11□□□□□ -1.59
CHD1-202ENST00000414220 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
CHD1-202ENST00000414220 A0A0A0MQY5 61 aa5.05□□□□□ -1.6
CHD1-202ENST00000414220 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
CHD1-202ENST00000414220 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
CHD1-202ENST00000414220 MT4P47944 62 aa4.84□□□□□ -1.63
CHD1-202ENST00000414220 BRK1Q8WUW1 75 aa4.83□□□□□ -1.64
CHD1-202ENST00000414220 LCE3CQ5T5A8 94 aa4.81□□□□□ -1.64
CHD1-202ENST00000414220 KRTAP5-4Q6L8H1 288 aa4.81□□□□□ -1.64
CHD1-202ENST00000414220 KRTAP5-5Q701N2 237 aaPredicted RBP4.69□□□□□ -1.66
CHD1-202ENST00000414220 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
CHD1-202ENST00000414220 HMCN1Q96RW7 5635 aa4.65□□□□□ -1.66
CHD1-202ENST00000414220 SPRR5A0A1B0GTR4 108 aa4.59□□□□□ -1.67
CHD1-202ENST00000414220 PMAIP1Q13794 54 aa4.57□□□□□ -1.68
CHD1-202ENST00000414220 KRTAP20-2Q3LI61 65 aa4.55□□□□□ -1.68
CHD1-202ENST00000414220 PRO0628Q9UI54 55 aa4.52□□□□□ -1.69
CHD1-202ENST00000414220 GPR98Q8WXG9 6306 aa4.51□□□□□ -1.69
CHD1-202ENST00000414220 MT1AP04731 61 aa4.48□□□□□ -1.69
CHD1-202ENST00000414220 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
CHD1-202ENST00000414220 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
CHD1-202ENST00000414220 KRTAP6-1Q3LI64 71 aa4.4□□□□□ -1.71
CHD1-202ENST00000414220 KRTAP5-10Q6L8G5 202 aa4.38□□□□□ -1.71
CHD1-202ENST00000414220 AHNAK2Q8IVF2 5795 aa4.37□□□□□ -1.71
CHD1-202ENST00000414220 PRAC1Q96KF2 57 aa4.27□□□□□ -1.73
CHD1-202ENST00000414220 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
CHD1-202ENST00000414220 KRTAP5-7Q6L8G8 165 aa4.22□□□□□ -1.73
CHD1-202ENST00000414220 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
CHD1-202ENST00000414220 MT3P25713 68 aa4.14□□□□□ -1.75
CHD1-202ENST00000414220 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.14□□□□□ -1.75
CHD1-202ENST00000414220 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
CHD1-202ENST00000414220 KRTAP5-8O75690 187 aa3.95□□□□□ -1.78
CHD1-202ENST00000414220 KRTAP5-11Q6L8G4 156 aa3.92□□□□□ -1.78
CHD1-202ENST00000414220 LUZP6Q538Z0 58 aa3.85□□□□□ -1.79
CHD1-202ENST00000414220 OBSCNQ5VST9 7968 aa3.84□□□□□ -1.79
CHD1-202ENST00000414220 KRTAP5-1Q6L8H4 278 aa3.76□□□□□ -1.81
CHD1-202ENST00000414220 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
CHD1-202ENST00000414220 NDUFAF8A1L188 74 aa3.69□□□□□ -1.82
CHD1-202ENST00000414220 MUC5ACP98088 5654 aa3.58□□□□□ -1.84
CHD1-202ENST00000414220 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
CHD1-202ENST00000414220 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
CHD1-202ENST00000414220 AHNAKQ09666 5890 aaKnown RBP3.52□□□□□ -1.85
CHD1-202ENST00000414220 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
CHD1-202ENST00000414220 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
CHD1-202ENST00000414220 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
CHD1-202ENST00000414220 LCE3EQ5T5B0 92 aa3.36□□□□□ -1.87
CHD1-202ENST00000414220 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
CHD1-202ENST00000414220 INE1O15225 51 aa2.94□□□□□ -1.94
CHD1-202ENST00000414220 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
CHD1-202ENST00000414220 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
CHD1-202ENST00000414220 PRM1P04553 51 aa2.59□□□□□ -1.99
CHD1-202ENST00000414220 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
CHD1-202ENST00000414220 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
CHD1-202ENST00000414220 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 89.8 ms