RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 DNAH5Q8TE73 4624 aa0.76□□□□□ -2.29
BRCA1-204ENST00000412061 HSPG2P98160 4391 aa0.75□□□□□ -2.29
BRCA1-204ENST00000412061 DYNC1H1Q14204 4646 aaKnown RBP0.75□□□□□ -2.29
BRCA1-204ENST00000412061 TNXBP22105 4242 aa0.75□□□□□ -2.29
BRCA1-204ENST00000412061 FAT3Q8TDW7 4589 aa0.75□□□□□ -2.29
BRCA1-204ENST00000412061 USP24Q9UPU5 2620 aa0.75□□□□□ -2.29
BRCA1-204ENST00000412061 MGAM2Q2M2H8 2515 aa0.74□□□□□ -2.29
BRCA1-204ENST00000412061 STARD9Q9P2P6 4700 aa0.74□□□□□ -2.29
BRCA1-204ENST00000412061 SMR3BP02814 79 aaPredicted RBP0.73□□□□□ -2.29
BRCA1-204ENST00000412061 FAT1Q14517 4588 aa0.72□□□□□ -2.29
BRCA1-204ENST00000412061 M0R2T5 61 aa0.71□□□□□ -2.3
BRCA1-204ENST00000412061 KRTAP19-2Q3LHN2 52 aa0.71□□□□□ -2.3
BRCA1-204ENST00000412061 SPRR2GQ9BYE4 73 aa0.71□□□□□ -2.3
BRCA1-204ENST00000412061 FLGP20930 4061 aaPredicted RBP0.71□□□□□ -2.3
BRCA1-204ENST00000412061 PRM1P04553 51 aa0.7□□□□□ -2.3
BRCA1-204ENST00000412061 MT1HL1P0DM35 61 aa0.7□□□□□ -2.3
BRCA1-204ENST00000412061 LPAP08519 4548 aa0.68□□□□□ -2.3
BRCA1-204ENST00000412061 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
BRCA1-204ENST00000412061 MUC17Q685J3 4493 aa0.67□□□□□ -2.3
BRCA1-204ENST00000412061 SYNE1Q8NF91 8797 aaKnown RBP0.66□□□□□ -2.3
BRCA1-204ENST00000412061 KRTAP19-8Q3LI54 63 aa0.66□□□□□ -2.3
BRCA1-204ENST00000412061 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
BRCA1-204ENST00000412061 MUC5BQ9HC84 5762 aaPredicted RBP0.66□□□□□ -2.3
BRCA1-204ENST00000412061 DNHD1Q96M86 4753 aa0.65□□□□□ -2.31
BRCA1-204ENST00000412061 KRTAP19-5Q3LI72 72 aa0.64□□□□□ -2.31
BRCA1-204ENST00000412061 LRP2P98164 4655 aa0.64□□□□□ -2.31
BRCA1-204ENST00000412061 MT1XP80297 61 aa0.64□□□□□ -2.31
BRCA1-204ENST00000412061 HYDINQ4G0P3 5121 aa0.63□□□□□ -2.31
BRCA1-204ENST00000412061 HERC1Q15751 4861 aa0.63□□□□□ -2.31
BRCA1-204ENST00000412061 MT1AP04731 61 aa0.61□□□□□ -2.31
BRCA1-204ENST00000412061 MT1EP04732 61 aa0.61□□□□□ -2.31
BRCA1-204ENST00000412061 MT1BP07438 61 aa0.61□□□□□ -2.31
BRCA1-204ENST00000412061 MT1LQ93083 61 aa0.6□□□□□ -2.31
BRCA1-204ENST00000412061 KMT2CQ8NEZ4 4911 aaKnown RBP0.59□□□□□ -2.32
BRCA1-204ENST00000412061 MT2AP02795 61 aa0.58□□□□□ -2.32
BRCA1-204ENST00000412061 MT1FP04733 61 aa0.58□□□□□ -2.32
BRCA1-204ENST00000412061 MUC2Q02817 5179 aa0.57□□□□□ -2.32
BRCA1-204ENST00000412061 HMCN2Q8NDA2 5059 aa0.57□□□□□ -2.32
BRCA1-204ENST00000412061 KRTAP19-7Q3SYF9 63 aa0.57□□□□□ -2.32
BRCA1-204ENST00000412061 GPR98Q8WXG9 6306 aa0.56□□□□□ -2.32
BRCA1-204ENST00000412061 MT1HP80294 61 aa0.56□□□□□ -2.32
BRCA1-204ENST00000412061 RYR2Q92736 4967 aa0.55□□□□□ -2.32
BRCA1-204ENST00000412061 SPRR2DP22532 72 aa0.55□□□□□ -2.32
BRCA1-204ENST00000412061 RYR1P21817 5038 aa0.54□□□□□ -2.32
BRCA1-204ENST00000412061 RYR3Q15413 4870 aa0.54□□□□□ -2.32
BRCA1-204ENST00000412061 PCLOQ9Y6V0 5065 aa0.52□□□□□ -2.33
BRCA1-204ENST00000412061 ABCA13Q86UQ4 5058 aa0.52□□□□□ -2.33
BRCA1-204ENST00000412061 MT1GP13640 62 aa0.52□□□□□ -2.33
BRCA1-204ENST00000412061 HERC2O95714 4834 aa0.52□□□□□ -2.33
BRCA1-204ENST00000412061 BIRC6Q9NR09 4857 aa0.51□□□□□ -2.33
BRCA1-204ENST00000412061 SPRR2FQ96RM1 72 aa0.51□□□□□ -2.33
BRCA1-204ENST00000412061 UBR4Q5T4S7 5183 aa0.51□□□□□ -2.33
BRCA1-204ENST00000412061 KRTAP6-2Q3LI66 62 aa0.5□□□□□ -2.33
BRCA1-204ENST00000412061 MT1MQ8N339 61 aa0.5□□□□□ -2.33
BRCA1-204ENST00000412061 SPRR2AP35326 72 aa0.49□□□□□ -2.33
BRCA1-204ENST00000412061 KIAA1109Q2LD37 5005 aa0.49□□□□□ -2.33
BRCA1-204ENST00000412061 FAT4Q6V0I7 4981 aa0.49□□□□□ -2.33
BRCA1-204ENST00000412061 MUC5ACP98088 5654 aa0.48□□□□□ -2.33
BRCA1-204ENST00000412061 EPPK1P58107 5090 aaKnown RBP0.48□□□□□ -2.33
BRCA1-204ENST00000412061 RNF213Q63HN8 5207 aa0.47□□□□□ -2.33
BRCA1-204ENST00000412061 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
BRCA1-204ENST00000412061 SPRR2EP22531 72 aa0.47□□□□□ -2.33
BRCA1-204ENST00000412061 SPRR2BP35325 72 aa0.47□□□□□ -2.33
BRCA1-204ENST00000412061 KRTAP6-1Q3LI64 71 aa0.46□□□□□ -2.34
BRCA1-204ENST00000412061 KMT2DO14686 5537 aa0.45□□□□□ -2.34
BRCA1-204ENST00000412061 KRTAP19-6Q3LI70 58 aa0.43□□□□□ -2.34
BRCA1-204ENST00000412061 USH2AO75445 5202 aa0.43□□□□□ -2.34
BRCA1-204ENST00000412061 SSPOA2VEC9 5147 aa0.41□□□□□ -2.34
BRCA1-204ENST00000412061 MDN1Q9NU22 5596 aa0.39□□□□□ -2.35
BRCA1-204ENST00000412061 MACF1Q9UPN3 7388 aaKnown RBP0.38□□□□□ -2.35
BRCA1-204ENST00000412061 MUC12Q9UKN1 5478 aa0.35□□□□□ -2.35
BRCA1-204ENST00000412061 SYNE2Q8WXH0 6885 aaKnown RBP0.34□□□□□ -2.35
BRCA1-204ENST00000412061 FSIP2Q5CZC0 6907 aa0.31□□□□□ -2.36
BRCA1-204ENST00000412061 KRTAP20-2Q3LI61 65 aa0.29□□□□□ -2.36
BRCA1-204ENST00000412061 DSTQ03001 7570 aaKnown RBP0.27□□□□□ -2.37
BRCA1-204ENST00000412061 KRTAP20-1Q3LI63 56 aa0.25□□□□□ -2.37
BRCA1-204ENST00000412061 MT4P47944 62 aa0.22□□□□□ -2.37
BRCA1-204ENST00000412061 NEBP20929 6669 aa0.19□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 111.3 ms