RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 LCE4AQ5TA78 99 aa6.8□□□□□ -1.32
TSPAN4-209ENST00000409543 LCE1DQ5T752 114 aa6.79□□□□□ -1.32
TSPAN4-209ENST00000409543 KRTAP4-3Q9BYR4 195 aa6.78□□□□□ -1.32
TSPAN4-209ENST00000409543 KRTAP12-3P60328 96 aa6.74□□□□□ -1.33
TSPAN4-209ENST00000409543 MT4P47944 62 aa6.7□□□□□ -1.34
TSPAN4-209ENST00000409543 HMCN1Q96RW7 5635 aa6.69□□□□□ -1.34
TSPAN4-209ENST00000409543 MIR22HGQ0VDD5 57 aa6.68□□□□□ -1.34
TSPAN4-209ENST00000409543 KRTAP5-4Q6L8H1 288 aa6.67□□□□□ -1.34
TSPAN4-209ENST00000409543 KRTAP25-1Q3LHN0 102 aa6.62□□□□□ -1.35
TSPAN4-209ENST00000409543 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
TSPAN4-209ENST00000409543 K7ERS5 55 aa6.58□□□□□ -1.36
TSPAN4-209ENST00000409543 V9GYY9 64 aa6.56□□□□□ -1.36
TSPAN4-209ENST00000409543 PSPHP1O15172 72 aa6.52□□□□□ -1.37
TSPAN4-209ENST00000409543 KRTAP4-6Q9BYQ5 205 aa6.52□□□□□ -1.37
TSPAN4-209ENST00000409543 Q1T7F1 81 aa6.51□□□□□ -1.37
TSPAN4-209ENST00000409543 AHNAK2Q8IVF2 5795 aa6.45□□□□□ -1.38
TSPAN4-209ENST00000409543 KRTAP19-4Q3LI73 84 aa6.4□□□□□ -1.38
TSPAN4-209ENST00000409543 KRTAP23-1A1A580 65 aa6.39□□□□□ -1.39
TSPAN4-209ENST00000409543 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
TSPAN4-209ENST00000409543 KRTAP5-10Q6L8G5 202 aa6.32□□□□□ -1.4
TSPAN4-209ENST00000409543 A6NED7 52 aa6.3□□□□□ -1.4
TSPAN4-209ENST00000409543 KRTAP15-1Q3LI76 137 aa6.29□□□□□ -1.4
TSPAN4-209ENST00000409543 LOC100996750A0A140TA64 210 aa6.28□□□□□ -1.4
TSPAN4-209ENST00000409543 KRTAP20-2Q3LI61 65 aa6.28□□□□□ -1.4
TSPAN4-209ENST00000409543 SPRR5A0A1B0GTR4 108 aa6.27□□□□□ -1.41
TSPAN4-209ENST00000409543 KRTAP12-4P60329 112 aa6.24□□□□□ -1.41
TSPAN4-209ENST00000409543 LCE3CQ5T5A8 94 aa6.21□□□□□ -1.42
TSPAN4-209ENST00000409543 CDC42SE1Q9NRR8 79 aa6.21□□□□□ -1.42
TSPAN4-209ENST00000409543 KRTAP5-3Q6L8H2 238 aa6.18□□□□□ -1.42
TSPAN4-209ENST00000409543 SYNE1Q8NF91 8797 aaKnown RBP6.15□□□□□ -1.43
TSPAN4-209ENST00000409543 ROMO1P60602 79 aa6.12□□□□□ -1.43
TSPAN4-209ENST00000409543 RPS28P62857 69 aaKnown RBP6.12□□□□□ -1.43
TSPAN4-209ENST00000409543 KRTAP5-7Q6L8G8 165 aa6.09□□□□□ -1.43
TSPAN4-209ENST00000409543 PCP4P48539 62 aa6.02□□□□□ -1.45
TSPAN4-209ENST00000409543 MT1AP04731 61 aa5.94□□□□□ -1.46
TSPAN4-209ENST00000409543 KRTAP6-1Q3LI64 71 aa5.9□□□□□ -1.46
TSPAN4-209ENST00000409543 KRTAP9-6A8MVA2 160 aa5.84□□□□□ -1.47
TSPAN4-209ENST00000409543 KRTAP5-2Q701N4 177 aa5.83□□□□□ -1.48
TSPAN4-209ENST00000409543 KRTAP9-4Q9BYQ2 154 aa5.75□□□□□ -1.49
TSPAN4-209ENST00000409543 KRTAP4-11Q9BYQ6 195 aa5.75□□□□□ -1.49
TSPAN4-209ENST00000409543 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.5
TSPAN4-209ENST00000409543 KRTAP5-8O75690 187 aa5.55□□□□□ -1.52
TSPAN4-209ENST00000409543 OBSCNQ5VST9 7968 aa5.51□□□□□ -1.53
TSPAN4-209ENST00000409543 MT3P25713 68 aa5.44□□□□□ -1.54
TSPAN4-209ENST00000409543 AHNAKQ09666 5890 aaKnown RBP5.33□□□□□ -1.56
TSPAN4-209ENST00000409543 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
TSPAN4-209ENST00000409543 BRK1Q8WUW1 75 aa5.32□□□□□ -1.56
TSPAN4-209ENST00000409543 MUC5BQ9HC84 5762 aaPredicted RBP5.3□□□□□ -1.56
TSPAN4-209ENST00000409543 KRTAP9-9Q9BYP9 154 aa5.27□□□□□ -1.57
TSPAN4-209ENST00000409543 KRTAP5-1Q6L8H4 278 aa5.23□□□□□ -1.57
TSPAN4-209ENST00000409543 LCE1EQ5T753 118 aa5.02□□□□□ -1.61
TSPAN4-209ENST00000409543 PMAIP1Q13794 54 aa5□□□□□ -1.61
TSPAN4-209ENST00000409543 PRAC1Q96KF2 57 aa4.83□□□□□ -1.64
TSPAN4-209ENST00000409543 PRO0628Q9UI54 55 aa4.82□□□□□ -1.64
TSPAN4-209ENST00000409543 KRTAP4-2Q9BYR5 136 aa4.73□□□□□ -1.65
TSPAN4-209ENST00000409543 LCE1BQ5T7P3 118 aa4.7□□□□□ -1.66
TSPAN4-209ENST00000409543 LCE1CQ5T751 118 aa4.66□□□□□ -1.66
TSPAN4-209ENST00000409543 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
TSPAN4-209ENST00000409543 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.7
TSPAN4-209ENST00000409543 KRTAP4-12Q9BQ66 201 aa4.28□□□□□ -1.72
TSPAN4-209ENST00000409543 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
TSPAN4-209ENST00000409543 KRTAP5-11Q6L8G4 156 aa4.21□□□□□ -1.74
TSPAN4-209ENST00000409543 LCE3EQ5T5B0 92 aa4.19□□□□□ -1.74
TSPAN4-209ENST00000409543 SVIPQ8NHG7 77 aa4.19□□□□□ -1.74
TSPAN4-209ENST00000409543 LUZP6Q538Z0 58 aa4.12□□□□□ -1.75
TSPAN4-209ENST00000409543 LCE1FQ5T754 118 aa4.12□□□□□ -1.75
TSPAN4-209ENST00000409543 KRTAP21-2Q3LI59 83 aa3.89□□□□□ -1.79
TSPAN4-209ENST00000409543 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
TSPAN4-209ENST00000409543 KRTAP4-4Q9BYR3 166 aa3.55□□□□□ -1.84
TSPAN4-209ENST00000409543 NDUFAF8A1L188 74 aa3.4□□□□□ -1.87
TSPAN4-209ENST00000409543 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
TSPAN4-209ENST00000409543 PRM1P04553 51 aa3.12□□□□□ -1.91
TSPAN4-209ENST00000409543 A0A0A0MQY5 61 aa2.98□□□□□ -1.93
TSPAN4-209ENST00000409543 INE1O15225 51 aa2.88□□□□□ -1.95
TSPAN4-209ENST00000409543 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
TSPAN4-209ENST00000409543 H3BS24 57 aa2.55□□□□□ -2
TSPAN4-209ENST00000409543 MUC16Q8WXI7 14507 aa2.43□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 14.8 ms