RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 BIRC6Q9NR09 4857 aa2.2□□□□□ -2.06
UPF2-203ENST00000397053 KRTAP20-1Q3LI63 56 aa2.19□□□□□ -2.06
UPF2-203ENST00000397053 PKHD1P08F94 4074 aa2.19□□□□□ -2.06
UPF2-203ENST00000397053 KRTAP19-6Q3LI70 58 aa2.18□□□□□ -2.06
UPF2-203ENST00000397053 SYNE2Q8WXH0 6885 aaKnown RBP2.18□□□□□ -2.06
UPF2-203ENST00000397053 PRM1P04553 51 aa2.18□□□□□ -2.06
UPF2-203ENST00000397053 ABCA13Q86UQ4 5058 aa2.16□□□□□ -2.06
UPF2-203ENST00000397053 MUC2Q02817 5179 aa2.16□□□□□ -2.06
UPF2-203ENST00000397053 GPR98Q8WXG9 6306 aa2.15□□□□□ -2.06
UPF2-203ENST00000397053 LRP2P98164 4655 aa2.15□□□□□ -2.07
UPF2-203ENST00000397053 KRTAP9-7A8MTY7 169 aa2.14□□□□□ -2.07
UPF2-203ENST00000397053 HSPG2P98160 4391 aa2.13□□□□□ -2.07
UPF2-203ENST00000397053 TNXBP22105 4242 aa2.13□□□□□ -2.07
UPF2-203ENST00000397053 LOC100996750A0A140TA64 210 aa2.12□□□□□ -2.07
UPF2-203ENST00000397053 KRTAP4-3Q9BYR4 195 aa2.12□□□□□ -2.07
UPF2-203ENST00000397053 DSTQ03001 7570 aaKnown RBP2.1□□□□□ -2.07
UPF2-203ENST00000397053 MT1AP04731 61 aa2.1□□□□□ -2.07
UPF2-203ENST00000397053 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
UPF2-203ENST00000397053 LCE1EQ5T753 118 aa2.08□□□□□ -2.08
UPF2-203ENST00000397053 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
UPF2-203ENST00000397053 LCE1AQ5T7P2 110 aa2.08□□□□□ -2.08
UPF2-203ENST00000397053 KRTAP2-3P0C7H8 128 aa2.07□□□□□ -2.08
UPF2-203ENST00000397053 KRTAP2-4Q9BYR9 128 aa2.07□□□□□ -2.08
UPF2-203ENST00000397053 KRTAP19-2Q3LHN2 52 aa2.05□□□□□ -2.08
UPF2-203ENST00000397053 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
UPF2-203ENST00000397053 KRTAP6-3Q3LI67 103 aa2.02□□□□□ -2.09
UPF2-203ENST00000397053 KRTAP2-1Q9BYU5 128 aa2.02□□□□□ -2.09
UPF2-203ENST00000397053 KRTAP4-9Q9BYQ8 210 aa2.01□□□□□ -2.09
UPF2-203ENST00000397053 LPAP08519 4548 aa2.01□□□□□ -2.09
UPF2-203ENST00000397053 KRTAP2-2Q9BYT5 123 aa2□□□□□ -2.09
UPF2-203ENST00000397053 LCE2AQ5TA79 106 aaPredicted RBP2□□□□□ -2.09
UPF2-203ENST00000397053 RNF213Q63HN8 5207 aa2□□□□□ -2.09
UPF2-203ENST00000397053 KRTAP19-7Q3SYF9 63 aa2□□□□□ -2.09
UPF2-203ENST00000397053 MUC17Q685J3 4493 aa1.98□□□□□ -2.09
UPF2-203ENST00000397053 LCE4AQ5TA78 99 aa1.98□□□□□ -2.09
UPF2-203ENST00000397053 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.96□□□□□ -2.1
UPF2-203ENST00000397053 KRTAP6-2Q3LI66 62 aa1.96□□□□□ -2.1
UPF2-203ENST00000397053 FLGP20930 4061 aaPredicted RBP1.91□□□□□ -2.1
UPF2-203ENST00000397053 KMT2DO14686 5537 aa1.91□□□□□ -2.1
UPF2-203ENST00000397053 FAT4Q6V0I7 4981 aa1.9□□□□□ -2.1
UPF2-203ENST00000397053 KRTAP6-1Q3LI64 71 aa1.9□□□□□ -2.11
UPF2-203ENST00000397053 KRTAP9-4Q9BYQ2 154 aa1.89□□□□□ -2.11
UPF2-203ENST00000397053 FCGBPQ9Y6R7 5405 aaPredicted RBP1.89□□□□□ -2.11
UPF2-203ENST00000397053 USH2AO75445 5202 aa1.88□□□□□ -2.11
UPF2-203ENST00000397053 KRTAP9-9Q9BYP9 154 aa1.87□□□□□ -2.11
UPF2-203ENST00000397053 HMCN2Q8NDA2 5059 aa1.85□□□□□ -2.11
UPF2-203ENST00000397053 MDN1Q9NU22 5596 aa1.85□□□□□ -2.11
UPF2-203ENST00000397053 NEBP20929 6669 aa1.79□□□□□ -2.12
UPF2-203ENST00000397053 MUC12Q9UKN1 5478 aa1.76□□□□□ -2.13
UPF2-203ENST00000397053 KRTAP9-6A8MVA2 160 aa1.73□□□□□ -2.13
UPF2-203ENST00000397053 KRTAP4-6Q9BYQ5 205 aa1.72□□□□□ -2.13
UPF2-203ENST00000397053 KRTAP20-2Q3LI61 65 aa1.62□□□□□ -2.15
UPF2-203ENST00000397053 KRTAP4-11Q9BYQ6 195 aa1.61□□□□□ -2.15
UPF2-203ENST00000397053 KRTAP4-12Q9BQ66 201 aa1.57□□□□□ -2.16
UPF2-203ENST00000397053 KRTAP4-2Q9BYR5 136 aa1.57□□□□□ -2.16
UPF2-203ENST00000397053 KRTAP4-4Q9BYR3 166 aa1.55□□□□□ -2.16
UPF2-203ENST00000397053 KRTAP5-9P26371 169 aa1.55□□□□□ -2.16
UPF2-203ENST00000397053 AHNAK2Q8IVF2 5795 aa1.5□□□□□ -2.17
UPF2-203ENST00000397053 SSPOA2VEC9 5147 aa1.48□□□□□ -2.17
UPF2-203ENST00000397053 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
UPF2-203ENST00000397053 MUC5ACP98088 5654 aa1.45□□□□□ -2.18
UPF2-203ENST00000397053 KRTAP5-4Q6L8H1 288 aa1.41□□□□□ -2.18
UPF2-203ENST00000397053 KRTAP5-3Q6L8H2 238 aa1.34□□□□□ -2.19
UPF2-203ENST00000397053 KRTAP5-5Q701N2 237 aaPredicted RBP1.32□□□□□ -2.2
UPF2-203ENST00000397053 MUC5BQ9HC84 5762 aaPredicted RBP1.31□□□□□ -2.2
UPF2-203ENST00000397053 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
UPF2-203ENST00000397053 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.24□□□□□ -2.21
UPF2-203ENST00000397053 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
UPF2-203ENST00000397053 KRTAP5-8O75690 187 aa1.2□□□□□ -2.22
UPF2-203ENST00000397053 KRTAP5-2Q701N4 177 aa1.17□□□□□ -2.22
UPF2-203ENST00000397053 KRTAP5-7Q6L8G8 165 aa1.05□□□□□ -2.24
UPF2-203ENST00000397053 KRTAP5-10Q6L8G5 202 aa1.04□□□□□ -2.24
UPF2-203ENST00000397053 KRTAP5-11Q6L8G4 156 aa0.98□□□□□ -2.25
UPF2-203ENST00000397053 KRTAP5-1Q6L8H4 278 aa0.94□□□□□ -2.26
UPF2-203ENST00000397053 KRTAP21-2Q3LI59 83 aa0.85□□□□□ -2.27
UPF2-203ENST00000397053 KRTAP21-1Q3LI58 79 aa0.84□□□□□ -2.27
UPF2-203ENST00000397053 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 6.9 ms