RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MT3P25713 68 aa3.03□□□□□ -1.92
LIMCH1-202ENST00000381753 PKHD1P08F94 4074 aa3.03□□□□□ -1.92
LIMCH1-202ENST00000381753 CMYA5Q8N3K9 4069 aa3.02□□□□□ -1.93
LIMCH1-202ENST00000381753 HECTD4Q9Y4D8 3996 aa3□□□□□ -1.93
LIMCH1-202ENST00000381753 LCE3DQ9BYE3 92 aa2.98□□□□□ -1.93
LIMCH1-202ENST00000381753 MT1EP04732 61 aa2.97□□□□□ -1.93
LIMCH1-202ENST00000381753 LCE4AQ5TA78 99 aa2.96□□□□□ -1.94
LIMCH1-202ENST00000381753 ABCA13Q86UQ4 5058 aa2.95□□□□□ -1.94
LIMCH1-202ENST00000381753 FSIP2Q5CZC0 6907 aa2.95□□□□□ -1.94
LIMCH1-202ENST00000381753 MT1MQ8N339 61 aa2.95□□□□□ -1.94
LIMCH1-202ENST00000381753 MT1LQ93083 61 aa2.94□□□□□ -1.94
LIMCH1-202ENST00000381753 LCE1AQ5T7P2 110 aa2.92□□□□□ -1.94
LIMCH1-202ENST00000381753 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
LIMCH1-202ENST00000381753 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
LIMCH1-202ENST00000381753 LPAP08519 4548 aa2.88□□□□□ -1.95
LIMCH1-202ENST00000381753 KRTAP19-2Q3LHN2 52 aa2.87□□□□□ -1.95
LIMCH1-202ENST00000381753 LCE1CQ5T751 118 aa2.86□□□□□ -1.95
LIMCH1-202ENST00000381753 LCE1EQ5T753 118 aa2.86□□□□□ -1.95
LIMCH1-202ENST00000381753 LCE1FQ5T754 118 aa2.86□□□□□ -1.95
LIMCH1-202ENST00000381753 KRTAP4-7Q9BYR0 210 aa2.85□□□□□ -1.95
LIMCH1-202ENST00000381753 HYDINQ4G0P3 5121 aa2.84□□□□□ -1.95
LIMCH1-202ENST00000381753 MUC17Q685J3 4493 aa2.83□□□□□ -1.96
LIMCH1-202ENST00000381753 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
LIMCH1-202ENST00000381753 KRTAP4-3Q9BYR4 195 aa2.79□□□□□ -1.96
LIMCH1-202ENST00000381753 RNF213Q63HN8 5207 aa2.78□□□□□ -1.97
LIMCH1-202ENST00000381753 FAT4Q6V0I7 4981 aa2.75□□□□□ -1.97
LIMCH1-202ENST00000381753 LOC100996750A0A140TA64 210 aa2.74□□□□□ -1.97
LIMCH1-202ENST00000381753 MUC2Q02817 5179 aa2.72□□□□□ -1.97
LIMCH1-202ENST00000381753 MT1AP04731 61 aa2.7□□□□□ -1.98
LIMCH1-202ENST00000381753 FLGP20930 4061 aaPredicted RBP2.67□□□□□ -1.98
LIMCH1-202ENST00000381753 NEBP20929 6669 aa2.66□□□□□ -1.98
LIMCH1-202ENST00000381753 TNXBP22105 4242 aa2.65□□□□□ -1.99
LIMCH1-202ENST00000381753 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
LIMCH1-202ENST00000381753 PRM1P04553 51 aa2.61□□□□□ -1.99
LIMCH1-202ENST00000381753 KRTAP6-2Q3LI66 62 aa2.6□□□□□ -1.99
LIMCH1-202ENST00000381753 SYNE1Q8NF91 8797 aaKnown RBP2.6□□□□□ -1.99
LIMCH1-202ENST00000381753 HMCN2Q8NDA2 5059 aa2.56□□□□□ -2
LIMCH1-202ENST00000381753 MACF1Q9UPN3 7388 aaKnown RBP2.55□□□□□ -2
LIMCH1-202ENST00000381753 KRTAP19-7Q3SYF9 63 aa2.55□□□□□ -2
LIMCH1-202ENST00000381753 KRTAP9-4Q9BYQ2 154 aa2.53□□□□□ -2
LIMCH1-202ENST00000381753 KRTAP6-1Q3LI64 71 aa2.46□□□□□ -2.02
LIMCH1-202ENST00000381753 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
LIMCH1-202ENST00000381753 OBSCNQ5VST9 7968 aa2.41□□□□□ -2.02
LIMCH1-202ENST00000381753 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
LIMCH1-202ENST00000381753 KRTAP4-6Q9BYQ5 205 aa2.35□□□□□ -2.03
LIMCH1-202ENST00000381753 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
LIMCH1-202ENST00000381753 KMT2DO14686 5537 aa2.28□□□□□ -2.04
LIMCH1-202ENST00000381753 DSTQ03001 7570 aaKnown RBP2.24□□□□□ -2.05
LIMCH1-202ENST00000381753 KRTAP4-12Q9BQ66 201 aa2.22□□□□□ -2.05
LIMCH1-202ENST00000381753 KRTAP4-2Q9BYR5 136 aa2.22□□□□□ -2.05
LIMCH1-202ENST00000381753 KRTAP5-4Q6L8H1 288 aa2.2□□□□□ -2.06
LIMCH1-202ENST00000381753 KRTAP9-6A8MVA2 160 aa2.2□□□□□ -2.06
LIMCH1-202ENST00000381753 KRTAP4-11Q9BYQ6 195 aa2.19□□□□□ -2.06
LIMCH1-202ENST00000381753 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
LIMCH1-202ENST00000381753 MDN1Q9NU22 5596 aa2.17□□□□□ -2.06
LIMCH1-202ENST00000381753 USH2AO75445 5202 aa2.17□□□□□ -2.06
LIMCH1-202ENST00000381753 KRTAP5-3Q6L8H2 238 aa2.12□□□□□ -2.07
LIMCH1-202ENST00000381753 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
LIMCH1-202ENST00000381753 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
LIMCH1-202ENST00000381753 AHNAK2Q8IVF2 5795 aa1.99□□□□□ -2.09
LIMCH1-202ENST00000381753 PHGR1C9JFL3 82 aa1.96□□□□□ -2.1
LIMCH1-202ENST00000381753 KRTAP5-5Q701N2 237 aaPredicted RBP1.94□□□□□ -2.1
LIMCH1-202ENST00000381753 HMCN1Q96RW7 5635 aa1.91□□□□□ -2.1
LIMCH1-202ENST00000381753 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
LIMCH1-202ENST00000381753 MUC5ACP98088 5654 aa1.82□□□□□ -2.12
LIMCH1-202ENST00000381753 MUC12Q9UKN1 5478 aa1.8□□□□□ -2.12
LIMCH1-202ENST00000381753 AHNAKQ09666 5890 aaKnown RBP1.67□□□□□ -2.14
LIMCH1-202ENST00000381753 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
LIMCH1-202ENST00000381753 KRTAP5-7Q6L8G8 165 aa1.61□□□□□ -2.15
LIMCH1-202ENST00000381753 KRTAP5-10Q6L8G5 202 aa1.57□□□□□ -2.16
LIMCH1-202ENST00000381753 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
LIMCH1-202ENST00000381753 KRTAP21-1Q3LI58 79 aa1.39□□□□□ -2.19
LIMCH1-202ENST00000381753 KRTAP5-11Q6L8G4 156 aa1.36□□□□□ -2.19
LIMCH1-202ENST00000381753 KRTAP21-2Q3LI59 83 aa1.31□□□□□ -2.2
LIMCH1-202ENST00000381753 KRTAP5-1Q6L8H4 278 aa1.31□□□□□ -2.2
LIMCH1-202ENST00000381753 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.15□□□□□ -2.23
LIMCH1-202ENST00000381753 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 67.9 ms