RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
CCDC88A-201ENST00000263630 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
CCDC88A-201ENST00000263630 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
CCDC88A-201ENST00000263630 LCE4AQ5TA78 99 aa3.67□□□□□ -1.82
CCDC88A-201ENST00000263630 RYR1P21817 5038 aa3.66□□□□□ -1.82
CCDC88A-201ENST00000263630 KRTAP9-7A8MTY7 169 aa3.65□□□□□ -1.82
CCDC88A-201ENST00000263630 LPAP08519 4548 aa3.63□□□□□ -1.83
CCDC88A-201ENST00000263630 DNHD1Q96M86 4753 aa3.62□□□□□ -1.83
CCDC88A-201ENST00000263630 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
CCDC88A-201ENST00000263630 SYNE2Q8WXH0 6885 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-201ENST00000263630 KRTAP19-7Q3SYF9 63 aa3.54□□□□□ -1.84
CCDC88A-201ENST00000263630 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
CCDC88A-201ENST00000263630 KRTAP6-1Q3LI64 71 aa3.5□□□□□ -1.85
CCDC88A-201ENST00000263630 RYR3Q15413 4870 aa3.5□□□□□ -1.85
CCDC88A-201ENST00000263630 MUC17Q685J3 4493 aa3.49□□□□□ -1.85
CCDC88A-201ENST00000263630 KRTAP6-3Q3LI67 103 aa3.46□□□□□ -1.86
CCDC88A-201ENST00000263630 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
CCDC88A-201ENST00000263630 KRTAP19-2Q3LHN2 52 aa3.42□□□□□ -1.86
CCDC88A-201ENST00000263630 LRP2P98164 4655 aa3.37□□□□□ -1.87
CCDC88A-201ENST00000263630 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-201ENST00000263630 LCE2AQ5TA79 106 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-201ENST00000263630 HERC2O95714 4834 aa3.26□□□□□ -1.89
CCDC88A-201ENST00000263630 KMT2CQ8NEZ4 4911 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-201ENST00000263630 SYNE1Q8NF91 8797 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-201ENST00000263630 FSIP2Q5CZC0 6907 aa3.2□□□□□ -1.9
CCDC88A-201ENST00000263630 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
CCDC88A-201ENST00000263630 KRTAP9-6A8MVA2 160 aa3.18□□□□□ -1.9
CCDC88A-201ENST00000263630 KRTAP20-2Q3LI61 65 aa3.11□□□□□ -1.91
CCDC88A-201ENST00000263630 PCLOQ9Y6V0 5065 aa3.08□□□□□ -1.92
CCDC88A-201ENST00000263630 BIRC6Q9NR09 4857 aa3.04□□□□□ -1.92
CCDC88A-201ENST00000263630 RYR2Q92736 4967 aa3□□□□□ -1.93
CCDC88A-201ENST00000263630 HERC1Q15751 4861 aa2.95□□□□□ -1.94
CCDC88A-201ENST00000263630 OBSCNQ5VST9 7968 aa2.93□□□□□ -1.94
CCDC88A-201ENST00000263630 HMCN2Q8NDA2 5059 aa2.91□□□□□ -1.94
CCDC88A-201ENST00000263630 HYDINQ4G0P3 5121 aa2.88□□□□□ -1.95
CCDC88A-201ENST00000263630 EPPK1P58107 5090 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-201ENST00000263630 KRTAP4-4Q9BYR3 166 aa2.8□□□□□ -1.96
CCDC88A-201ENST00000263630 MUC2Q02817 5179 aa2.8□□□□□ -1.96
CCDC88A-201ENST00000263630 KRTAP4-6Q9BYQ5 205 aa2.79□□□□□ -1.96
CCDC88A-201ENST00000263630 KIAA1109Q2LD37 5005 aa2.77□□□□□ -1.97
CCDC88A-201ENST00000263630 KRTAP4-12Q9BQ66 201 aa2.76□□□□□ -1.97
CCDC88A-201ENST00000263630 KRTAP4-2Q9BYR5 136 aa2.76□□□□□ -1.97
CCDC88A-201ENST00000263630 MACF1Q9UPN3 7388 aaKnown RBP2.69□□□□□ -1.98
CCDC88A-201ENST00000263630 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-201ENST00000263630 KRTAP5-9P26371 169 aa2.59□□□□□ -2
CCDC88A-201ENST00000263630 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
CCDC88A-201ENST00000263630 NEBP20929 6669 aa2.52□□□□□ -2.01
CCDC88A-201ENST00000263630 FAT4Q6V0I7 4981 aa2.51□□□□□ -2.01
CCDC88A-201ENST00000263630 UBR4Q5T4S7 5183 aa2.49□□□□□ -2.01
CCDC88A-201ENST00000263630 RNF213Q63HN8 5207 aa2.49□□□□□ -2.01
CCDC88A-201ENST00000263630 ABCA13Q86UQ4 5058 aa2.45□□□□□ -2.02
CCDC88A-201ENST00000263630 KRTAP5-5Q701N2 237 aaPredicted RBP2.43□□□□□ -2.02
CCDC88A-201ENST00000263630 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
CCDC88A-201ENST00000263630 FCGBPQ9Y6R7 5405 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-201ENST00000263630 MDN1Q9NU22 5596 aa2.32□□□□□ -2.04
CCDC88A-201ENST00000263630 KMT2DO14686 5537 aa2.28□□□□□ -2.05
CCDC88A-201ENST00000263630 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
CCDC88A-201ENST00000263630 KRTAP5-3Q6L8H2 238 aa2.21□□□□□ -2.06
CCDC88A-201ENST00000263630 GPR98Q8WXG9 6306 aa2.15□□□□□ -2.06
CCDC88A-201ENST00000263630 MUC5ACP98088 5654 aa2.11□□□□□ -2.07
CCDC88A-201ENST00000263630 USH2AO75445 5202 aa2.1□□□□□ -2.07
CCDC88A-201ENST00000263630 KRTAP5-10Q6L8G5 202 aa2□□□□□ -2.09
CCDC88A-201ENST00000263630 SSPOA2VEC9 5147 aa1.99□□□□□ -2.09
CCDC88A-201ENST00000263630 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
CCDC88A-201ENST00000263630 KRTAP5-2Q701N4 177 aa1.92□□□□□ -2.1
CCDC88A-201ENST00000263630 MUC12Q9UKN1 5478 aa1.85□□□□□ -2.11
CCDC88A-201ENST00000263630 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-201ENST00000263630 HMCN1Q96RW7 5635 aa1.83□□□□□ -2.12
CCDC88A-201ENST00000263630 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CCDC88A-201ENST00000263630 KRTAP5-11Q6L8G4 156 aa1.77□□□□□ -2.13
CCDC88A-201ENST00000263630 KRTAP5-1Q6L8H4 278 aa1.72□□□□□ -2.13
CCDC88A-201ENST00000263630 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
CCDC88A-201ENST00000263630 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
CCDC88A-201ENST00000263630 AHNAKQ09666 5890 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-201ENST00000263630 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.4□□□□□ -2.18
CCDC88A-201ENST00000263630 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
CCDC88A-201ENST00000263630 KRTAP5-7Q6L8G8 165 aa1.24□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 95.6 ms