RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 H1FX-AS1Q4G0G2 97 aa8.44□□□□□ -1.06
CLN3-252ENST00000636907 V9GYY9 64 aa8.42□□□□□ -1.06
CLN3-252ENST00000636907 LCA10Q71F78 164 aa8.39□□□□□ -1.07
CLN3-252ENST00000636907 LINC01558Q9Y6Z2 57 aa8.39□□□□□ -1.07
CLN3-252ENST00000636907 S4R3F8 94 aa8.39□□□□□ -1.07
CLN3-252ENST00000636907 SPTSSBQ8NFR3 76 aa8.38□□□□□ -1.07
CLN3-252ENST00000636907 PSPHP1O15172 72 aa8.35□□□□□ -1.07
CLN3-252ENST00000636907 KRTAP19-2Q3LHN2 52 aa8.34□□□□□ -1.07
CLN3-252ENST00000636907 PRR15LQ9BU68 103 aa8.34□□□□□ -1.08
CLN3-252ENST00000636907 MUC2Q02817 5179 aa8.32□□□□□ -1.08
CLN3-252ENST00000636907 SVIPQ8NHG7 77 aa8.28□□□□□ -1.08
CLN3-252ENST00000636907 Q5VV11 94 aa8.27□□□□□ -1.08
CLN3-252ENST00000636907 UBR4Q5T4S7 5183 aa8.26□□□□□ -1.09
CLN3-252ENST00000636907 A0A1B0GU69 56 aa8.25□□□□□ -1.09
CLN3-252ENST00000636907 RNF213Q63HN8 5207 aa8.21□□□□□ -1.09
CLN3-252ENST00000636907 CSAG1Q6PB30 78 aa8.18□□□□□ -1.1
CLN3-252ENST00000636907 SEC61GP60059 68 aa8.18□□□□□ -1.1
CLN3-252ENST00000636907 FLGP20930 4061 aaPredicted RBP8.13□□□□□ -1.11
CLN3-252ENST00000636907 LCE2CQ5TA81 110 aa8.13□□□□□ -1.11
CLN3-252ENST00000636907 A6NED7 52 aa8.08□□□□□ -1.12
CLN3-252ENST00000636907 KRTAP10-6P60371 365 aaPredicted RBP8.06□□□□□ -1.12
CLN3-252ENST00000636907 ADM2Q7Z4H4 148 aa8.03□□□□□ -1.12
CLN3-252ENST00000636907 FAT4Q6V0I7 4981 aa8.02□□□□□ -1.13
CLN3-252ENST00000636907 BRK1Q8WUW1 75 aa8.02□□□□□ -1.13
CLN3-252ENST00000636907 P0C880 135 aa8□□□□□ -1.13
CLN3-252ENST00000636907 A0A1B0GU33 70 aa7.99□□□□□ -1.13
CLN3-252ENST00000636907 H0YAA0 97 aa7.99□□□□□ -1.13
CLN3-252ENST00000636907 UQCR11O14957 56 aa7.99□□□□□ -1.13
CLN3-252ENST00000636907 MT1HP80294 61 aa7.96□□□□□ -1.13
CLN3-252ENST00000636907 A8MU10 97 aa7.95□□□□□ -1.14
CLN3-252ENST00000636907 CDC42SE1Q9NRR8 79 aa7.93□□□□□ -1.14
CLN3-252ENST00000636907 MIR22HGQ0VDD5 57 aa7.92□□□□□ -1.14
CLN3-252ENST00000636907 SPATA8Q6RVD6 105 aa7.92□□□□□ -1.14
CLN3-252ENST00000636907 M0R2T5 61 aa7.88□□□□□ -1.15
CLN3-252ENST00000636907 KRTAP13-4Q3LI77 160 aa7.86□□□□□ -1.15
CLN3-252ENST00000636907 LCE2BO14633 110 aa7.83□□□□□ -1.16
CLN3-252ENST00000636907 PRO0628Q9UI54 55 aa7.82□□□□□ -1.16
CLN3-252ENST00000636907 LORP23490 312 aaPredicted RBP7.8□□□□□ -1.16
CLN3-252ENST00000636907 M0QZ58 72 aa7.76□□□□□ -1.17
CLN3-252ENST00000636907 R4GN34 69 aa7.73□□□□□ -1.17
CLN3-252ENST00000636907 A0A0D9SG42 100 aa7.71□□□□□ -1.18
CLN3-252ENST00000636907 KRTAP9-8Q9BYQ0 159 aa7.67□□□□□ -1.18
CLN3-252ENST00000636907 MT2AP02795 61 aa7.66□□□□□ -1.18
CLN3-252ENST00000636907 CRIPTQ9P021 101 aa7.63□□□□□ -1.19
CLN3-252ENST00000636907 MT1FP04733 61 aa7.62□□□□□ -1.19
CLN3-252ENST00000636907 LCE2AQ5TA79 106 aaPredicted RBP7.62□□□□□ -1.19
CLN3-252ENST00000636907 LINC01554Q52M75 96 aa7.6□□□□□ -1.19
CLN3-252ENST00000636907 LOC100996750A0A140TA64 210 aa7.6□□□□□ -1.19
CLN3-252ENST00000636907 KRTAP4-6Q9BYQ5 205 aa7.6□□□□□ -1.19
CLN3-252ENST00000636907 KRTAP10-10P60014 251 aa7.58□□□□□ -1.2
CLN3-252ENST00000636907 PMAIP1Q13794 54 aa7.56□□□□□ -1.2
CLN3-252ENST00000636907 KRTAP12-1P59990 96 aa7.54□□□□□ -1.2
CLN3-252ENST00000636907 KRTAP12-2P59991 146 aa7.54□□□□□ -1.2
CLN3-252ENST00000636907 A6NN06 94 aa7.53□□□□□ -1.2
CLN3-252ENST00000636907 K7ERS5 55 aa7.53□□□□□ -1.2
CLN3-252ENST00000636907 SPINT4Q6UDR6 99 aa7.51□□□□□ -1.21
CLN3-252ENST00000636907 SPRR2GQ9BYE4 73 aa7.5□□□□□ -1.21
CLN3-252ENST00000636907 KRTAP19-1Q8IUB9 90 aa7.49□□□□□ -1.21
CLN3-252ENST00000636907 KRTAP9-3Q9BYQ3 159 aa7.39□□□□□ -1.23
CLN3-252ENST00000636907 KRTAP19-8Q3LI54 63 aa7.3□□□□□ -1.24
CLN3-252ENST00000636907 ROMO1P60602 79 aa7.25□□□□□ -1.25
CLN3-252ENST00000636907 KTN1-AS1Q86SY8 53 aa7.25□□□□□ -1.25
CLN3-252ENST00000636907 PLAC4Q8WY50 150 aa7.25□□□□□ -1.25
CLN3-252ENST00000636907 CAMK2N1Q7Z7J9 78 aa7.24□□□□□ -1.25
CLN3-252ENST00000636907 MT1BP07438 61 aa7.22□□□□□ -1.25
CLN3-252ENST00000636907 C10orf95Q9H7T3 257 aa7.15□□□□□ -1.27
CLN3-252ENST00000636907 PRAC1Q96KF2 57 aa7.12□□□□□ -1.27
CLN3-252ENST00000636907 MT1XP80297 61 aa6.99□□□□□ -1.29
CLN3-252ENST00000636907 USH2AO75445 5202 aa6.99□□□□□ -1.29
CLN3-252ENST00000636907 KRTAP10-5P60370 271 aa6.97□□□□□ -1.29
CLN3-252ENST00000636907 KRTAP25-1Q3LHN0 102 aa6.93□□□□□ -1.3
CLN3-252ENST00000636907 TNP1P09430 55 aa6.89□□□□□ -1.31
CLN3-252ENST00000636907 PRO2289Q9P1D8 64 aa6.86□□□□□ -1.31
CLN3-252ENST00000636907 KRTAP9-2Q9BYQ4 174 aa6.84□□□□□ -1.32
CLN3-252ENST00000636907 KRTAP4-8Q9BYQ9 185 aa6.8□□□□□ -1.32
CLN3-252ENST00000636907 SSPOA2VEC9 5147 aa6.78□□□□□ -1.32
CLN3-252ENST00000636907 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.75□□□□□ -1.33
CLN3-252ENST00000636907 KRTAP10-7P60409 375 aaPredicted RBP6.72□□□□□ -1.33
CLN3-252ENST00000636907 KRTAP19-6Q3LI70 58 aa6.72□□□□□ -1.33
CLN3-252ENST00000636907 KRTAP9-6A0A140TA67 174 aa6.7□□□□□ -1.34
CLN3-252ENST00000636907 PP632Q6XCG6 107 aa6.68□□□□□ -1.34
CLN3-252ENST00000636907 KRTAP23-1A1A580 65 aa6.66□□□□□ -1.34
CLN3-252ENST00000636907 FSIP2Q5CZC0 6907 aa6.63□□□□□ -1.35
CLN3-252ENST00000636907 KRTAP10-12P60413 245 aa6.63□□□□□ -1.35
CLN3-252ENST00000636907 LCE3AQ5TA76 89 aa6.63□□□□□ -1.35
CLN3-252ENST00000636907 CRCT1Q9UGL9 99 aa6.49□□□□□ -1.37
CLN3-252ENST00000636907 KRTAP8-1Q8IUC2 63 aa6.47□□□□□ -1.37
CLN3-252ENST00000636907 KRTAP4-8A0A0G2JLE6 195 aa6.46□□□□□ -1.37
CLN3-252ENST00000636907 FCGBPQ9Y6R7 5405 aaPredicted RBP6.44□□□□□ -1.38
CLN3-252ENST00000636907 LCE3BQ5TA77 95 aa6.42□□□□□ -1.38
CLN3-252ENST00000636907 KMT2DO14686 5537 aa6.41□□□□□ -1.38
CLN3-252ENST00000636907 KRTAP9-9Q9BYP9 154 aa6.39□□□□□ -1.39
CLN3-252ENST00000636907 KRTAP9-4Q9BYQ2 154 aa6.39□□□□□ -1.39
CLN3-252ENST00000636907 KRTAP12-3P60328 96 aa6.35□□□□□ -1.39
CLN3-252ENST00000636907 KRTAP4-12Q9BQ66 201 aa6.33□□□□□ -1.4
CLN3-252ENST00000636907 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
CLN3-252ENST00000636907 KRTAP19-7Q3SYF9 63 aa6.23□□□□□ -1.41
CLN3-252ENST00000636907 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.42
CLN3-252ENST00000636907 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
CLN3-252ENST00000636907 MT1EP04732 61 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms