RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 LCA10Q71F78 164 aa7.67□□□□□ -1.18
CLN6-216ENST00000636876 DMAC1Q96GE9 116 aa7.63□□□□□ -1.19
CLN6-216ENST00000636876 MT2AP02795 61 aa7.62□□□□□ -1.19
CLN6-216ENST00000636876 ANAPC13Q9BS18 74 aa7.62□□□□□ -1.19
CLN6-216ENST00000636876 CSAG1Q6PB30 78 aa7.61□□□□□ -1.19
CLN6-216ENST00000636876 KRTAP3-3Q9BYR6 98 aa7.6□□□□□ -1.19
CLN6-216ENST00000636876 NDUFC1O43677 76 aa7.55□□□□□ -1.2
CLN6-216ENST00000636876 MT1FP04733 61 aa7.55□□□□□ -1.2
CLN6-216ENST00000636876 SPANXA2-OT1Q8N9U9 137 aa7.55□□□□□ -1.2
CLN6-216ENST00000636876 KRTAP10-10P60014 251 aa7.53□□□□□ -1.2
CLN6-216ENST00000636876 ACYP2P14621 99 aa7.52□□□□□ -1.21
CLN6-216ENST00000636876 CYSTM1Q9H1C7 97 aa7.49□□□□□ -1.21
CLN6-216ENST00000636876 H7BZZ5 65 aa7.46□□□□□ -1.22
CLN6-216ENST00000636876 CCDC179H3BU77 68 aa7.45□□□□□ -1.22
CLN6-216ENST00000636876 SSPOA2VEC9 5147 aa7.44□□□□□ -1.22
CLN6-216ENST00000636876 USH2AO75445 5202 aa7.44□□□□□ -1.22
CLN6-216ENST00000636876 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.42□□□□□ -1.22
CLN6-216ENST00000636876 KRTAP9-3Q9BYQ3 159 aa7.42□□□□□ -1.22
CLN6-216ENST00000636876 KRTAP9-7A8MTY7 169 aa7.4□□□□□ -1.22
CLN6-216ENST00000636876 H0YAA0 97 aa7.38□□□□□ -1.23
CLN6-216ENST00000636876 CHKB-CPT1BH3BT56 60 aa7.38□□□□□ -1.23
CLN6-216ENST00000636876 SPTSSBQ8NFR3 76 aa7.35□□□□□ -1.23
CLN6-216ENST00000636876 COA5Q86WW8 74 aa7.32□□□□□ -1.24
CLN6-216ENST00000636876 ADM2Q7Z4H4 148 aa7.31□□□□□ -1.24
CLN6-216ENST00000636876 LCE2BO14633 110 aa7.3□□□□□ -1.24
CLN6-216ENST00000636876 FCGBPQ9Y6R7 5405 aaPredicted RBP7.3□□□□□ -1.24
CLN6-216ENST00000636876 ATP5EP56381 51 aaPredicted RBP7.24□□□□□ -1.25
CLN6-216ENST00000636876 KRTAP19-1Q8IUB9 90 aa7.24□□□□□ -1.25
CLN6-216ENST00000636876 CRIPTQ9P021 101 aa7.24□□□□□ -1.25
CLN6-216ENST00000636876 KRTAP3-2Q9BYR7 98 aa7.22□□□□□ -1.25
CLN6-216ENST00000636876 P0C880 135 aa7.21□□□□□ -1.26
CLN6-216ENST00000636876 SPRR2GQ9BYE4 73 aa7.21□□□□□ -1.26
CLN6-216ENST00000636876 TMEM258P61165 79 aa7.19□□□□□ -1.26
CLN6-216ENST00000636876 KRTAP19-8Q3LI54 63 aa7.11□□□□□ -1.27
CLN6-216ENST00000636876 R4GN34 69 aa7.08□□□□□ -1.28
CLN6-216ENST00000636876 MACF1Q9UPN3 7388 aaKnown RBP7.07□□□□□ -1.28
CLN6-216ENST00000636876 PCP4P48539 62 aa7.06□□□□□ -1.28
CLN6-216ENST00000636876 Q5VV11 94 aa7.06□□□□□ -1.28
CLN6-216ENST00000636876 M0QZ58 72 aa7.05□□□□□ -1.28
CLN6-216ENST00000636876 MT1BP07438 61 aa7.05□□□□□ -1.28
CLN6-216ENST00000636876 SYNE2Q8WXH0 6885 aaKnown RBP7.03□□□□□ -1.28
CLN6-216ENST00000636876 SEC61GP60059 68 aa7.02□□□□□ -1.29
CLN6-216ENST00000636876 SERP1Q9Y6X1 66 aa7□□□□□ -1.29
CLN6-216ENST00000636876 KRTAP19-6Q3LI70 58 aa6.97□□□□□ -1.29
CLN6-216ENST00000636876 A0A1B0GU69 56 aa6.92□□□□□ -1.3
CLN6-216ENST00000636876 LINC01554Q52M75 96 aa6.92□□□□□ -1.3
CLN6-216ENST00000636876 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
CLN6-216ENST00000636876 LINC01558Q9Y6Z2 57 aa6.88□□□□□ -1.31
CLN6-216ENST00000636876 A0A1B0GU33 70 aa6.87□□□□□ -1.31
CLN6-216ENST00000636876 PLAC4Q8WY50 150 aa6.85□□□□□ -1.31
CLN6-216ENST00000636876 PRR15LQ9BU68 103 aa6.84□□□□□ -1.31
CLN6-216ENST00000636876 A6NN06 94 aa6.8□□□□□ -1.32
CLN6-216ENST00000636876 KRTAP10-5P60370 271 aa6.8□□□□□ -1.32
CLN6-216ENST00000636876 KRTAP6-3Q3LI67 103 aa6.8□□□□□ -1.32
CLN6-216ENST00000636876 SPATA8Q6RVD6 105 aa6.78□□□□□ -1.32
CLN6-216ENST00000636876 SMIM26A0A096LP01 95 aa6.72□□□□□ -1.33
CLN6-216ENST00000636876 A0A0D9SG42 100 aa6.72□□□□□ -1.33
CLN6-216ENST00000636876 RPS28P62857 69 aaKnown RBP6.72□□□□□ -1.33
CLN6-216ENST00000636876 V9GYY9 64 aa6.72□□□□□ -1.33
CLN6-216ENST00000636876 MT1XP80297 61 aa6.71□□□□□ -1.34
CLN6-216ENST00000636876 Q1T7F1 81 aa6.7□□□□□ -1.34
CLN6-216ENST00000636876 PRO2289Q9P1D8 64 aa6.69□□□□□ -1.34
CLN6-216ENST00000636876 NEBP20929 6669 aa6.69□□□□□ -1.34
CLN6-216ENST00000636876 A8MU10 97 aa6.63□□□□□ -1.35
CLN6-216ENST00000636876 MUC12Q9UKN1 5478 aa6.62□□□□□ -1.35
CLN6-216ENST00000636876 UQCR11O14957 56 aa6.62□□□□□ -1.35
CLN6-216ENST00000636876 PSPHP1O15172 72 aa6.62□□□□□ -1.35
CLN6-216ENST00000636876 KRTAP12-1P59990 96 aa6.61□□□□□ -1.35
CLN6-216ENST00000636876 SPINT4Q6UDR6 99 aa6.6□□□□□ -1.35
CLN6-216ENST00000636876 CAMK2N1Q7Z7J9 78 aa6.58□□□□□ -1.36
CLN6-216ENST00000636876 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
CLN6-216ENST00000636876 MIR22HGQ0VDD5 57 aa6.51□□□□□ -1.37
CLN6-216ENST00000636876 KRTAP20-1Q3LI63 56 aa6.45□□□□□ -1.38
CLN6-216ENST00000636876 A6NED7 52 aa6.42□□□□□ -1.38
CLN6-216ENST00000636876 KRTAP10-7P60409 375 aaPredicted RBP6.4□□□□□ -1.38
CLN6-216ENST00000636876 KMT2DO14686 5537 aa6.39□□□□□ -1.39
CLN6-216ENST00000636876 KRTAP5-9P26371 169 aa6.38□□□□□ -1.39
CLN6-216ENST00000636876 MDN1Q9NU22 5596 aa6.38□□□□□ -1.39
CLN6-216ENST00000636876 KRTAP10-12P60413 245 aa6.37□□□□□ -1.39
CLN6-216ENST00000636876 K7ERS5 55 aa6.31□□□□□ -1.4
CLN6-216ENST00000636876 C10orf95Q9H7T3 257 aa6.28□□□□□ -1.4
CLN6-216ENST00000636876 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
CLN6-216ENST00000636876 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
CLN6-216ENST00000636876 KRTAP8-1Q8IUC2 63 aa6.25□□□□□ -1.41
CLN6-216ENST00000636876 CDC42SE1Q9NRR8 79 aa6.23□□□□□ -1.41
CLN6-216ENST00000636876 KRTAP2-3P0C7H8 128 aa6.18□□□□□ -1.42
CLN6-216ENST00000636876 KRTAP2-4Q9BYR9 128 aa6.18□□□□□ -1.42
CLN6-216ENST00000636876 TNP1P09430 55 aa6.17□□□□□ -1.42
CLN6-216ENST00000636876 SPRR2FQ96RM1 72 aa6.14□□□□□ -1.43
CLN6-216ENST00000636876 SPRR2EP22531 72 aa6.11□□□□□ -1.43
CLN6-216ENST00000636876 SPRR2BP35325 72 aa6.11□□□□□ -1.43
CLN6-216ENST00000636876 SPRR2AP35326 72 aa6.11□□□□□ -1.43
CLN6-216ENST00000636876 KRTAP25-1Q3LHN0 102 aa6.04□□□□□ -1.44
CLN6-216ENST00000636876 LCE3AQ5TA76 89 aa6.01□□□□□ -1.45
CLN6-216ENST00000636876 LCE1AQ5T7P2 110 aa6□□□□□ -1.45
CLN6-216ENST00000636876 KRTAP19-7Q3SYF9 63 aa5.99□□□□□ -1.45
CLN6-216ENST00000636876 BRK1Q8WUW1 75 aa5.97□□□□□ -1.45
CLN6-216ENST00000636876 ROMO1P60602 79 aa5.96□□□□□ -1.46
CLN6-216ENST00000636876 KRTAP2-2Q9BYT5 123 aa5.96□□□□□ -1.46
CLN6-216ENST00000636876 KRTAP2-1Q9BYU5 128 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms