RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 C20orf166-AS1Q96NR2 134 aa7.66□□□□□ -1.18
CLN3-242ENST00000635958 A8MUU9 505 aa7.66□□□□□ -1.18
CLN3-242ENST00000635958 SPINK7P58062 85 aa7.65□□□□□ -1.18
CLN3-242ENST00000635958 XP32Q5T750 250 aa7.64□□□□□ -1.19
CLN3-242ENST00000635958 LRP2P98164 4655 aa7.63□□□□□ -1.19
CLN3-242ENST00000635958 C7orf65Q6ZTY9 151 aa7.63□□□□□ -1.19
CLN3-242ENST00000635958 LPAP08519 4548 aa7.63□□□□□ -1.19
CLN3-242ENST00000635958 A0A1B0GU69 56 aa7.61□□□□□ -1.19
CLN3-242ENST00000635958 RPL37P61927 97 aaKnown RBP7.58□□□□□ -1.2
CLN3-242ENST00000635958 SPATA8Q6RVD6 105 aa7.57□□□□□ -1.2
CLN3-242ENST00000635958 IGKV2D-30A0A075B6S6 120 aa7.55□□□□□ -1.2
CLN3-242ENST00000635958 UQCR11O14957 56 aa7.53□□□□□ -1.2
CLN3-242ENST00000635958 RBM12B-AS1Q9P1G2 102 aa7.51□□□□□ -1.21
CLN3-242ENST00000635958 RNF213Q63HN8 5207 aa7.48□□□□□ -1.21
CLN3-242ENST00000635958 MIR22HGQ0VDD5 57 aa7.48□□□□□ -1.21
CLN3-242ENST00000635958 SEC61BP60468 96 aaKnown RBP7.45□□□□□ -1.22
CLN3-242ENST00000635958 MUC17Q685J3 4493 aa7.41□□□□□ -1.22
CLN3-242ENST00000635958 KRTAP4-1Q9BYQ7 146 aa7.3□□□□□ -1.24
CLN3-242ENST00000635958 MUC2Q02817 5179 aa7.23□□□□□ -1.25
CLN3-242ENST00000635958 PRAC1Q96KF2 57 aa7.19□□□□□ -1.26
CLN3-242ENST00000635958 LINC01554Q52M75 96 aa7.18□□□□□ -1.26
CLN3-242ENST00000635958 KRTAP9-6A0A140TA67 174 aa7.17□□□□□ -1.26
CLN3-242ENST00000635958 A0A1B0GU33 70 aa7.17□□□□□ -1.26
CLN3-242ENST00000635958 KRTAP9-2Q9BYQ4 174 aa7.16□□□□□ -1.26
CLN3-242ENST00000635958 COX6B2Q6YFQ2 88 aa7.15□□□□□ -1.26
CLN3-242ENST00000635958 H1FX-AS1Q4G0G2 97 aa7.14□□□□□ -1.27
CLN3-242ENST00000635958 ADM2Q7Z4H4 148 aa7.13□□□□□ -1.27
CLN3-242ENST00000635958 KRTAP3-1Q9BYR8 98 aa7.13□□□□□ -1.27
CLN3-242ENST00000635958 KRTAP19-2Q3LHN2 52 aa7.12□□□□□ -1.27
CLN3-242ENST00000635958 H0YAA0 97 aa7.1□□□□□ -1.27
CLN3-242ENST00000635958 K7ERS5 55 aa7.1□□□□□ -1.27
CLN3-242ENST00000635958 FAT4Q6V0I7 4981 aa7.07□□□□□ -1.28
CLN3-242ENST00000635958 CSAG1Q6PB30 78 aa7.06□□□□□ -1.28
CLN3-242ENST00000635958 LCE2CQ5TA81 110 aa7.01□□□□□ -1.29
CLN3-242ENST00000635958 KRTAP25-1Q3LHN0 102 aa6.97□□□□□ -1.29
CLN3-242ENST00000635958 LCE2AQ5TA79 106 aaPredicted RBP6.97□□□□□ -1.29
CLN3-242ENST00000635958 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.3
CLN3-242ENST00000635958 S4R3F8 94 aa6.91□□□□□ -1.3
CLN3-242ENST00000635958 KRTAP3-3Q9BYR6 98 aa6.88□□□□□ -1.31
CLN3-242ENST00000635958 MT1HP80294 61 aa6.86□□□□□ -1.31
CLN3-242ENST00000635958 ROMO1P60602 79 aa6.85□□□□□ -1.31
CLN3-242ENST00000635958 KRTAP10-6P60371 365 aaPredicted RBP6.83□□□□□ -1.32
CLN3-242ENST00000635958 KRTAP3-2Q9BYR7 98 aa6.77□□□□□ -1.33
CLN3-242ENST00000635958 M0R2T5 61 aa6.73□□□□□ -1.33
CLN3-242ENST00000635958 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
CLN3-242ENST00000635958 M0QZ58 72 aa6.66□□□□□ -1.34
CLN3-242ENST00000635958 A0A0D9SG42 100 aa6.64□□□□□ -1.35
CLN3-242ENST00000635958 CRCT1Q9UGL9 99 aa6.63□□□□□ -1.35
CLN3-242ENST00000635958 P0C880 135 aa6.62□□□□□ -1.35
CLN3-242ENST00000635958 LORP23490 312 aaPredicted RBP6.62□□□□□ -1.35
CLN3-242ENST00000635958 FSIP2Q5CZC0 6907 aa6.61□□□□□ -1.35
CLN3-242ENST00000635958 KRTAP9-8Q9BYQ0 159 aa6.6□□□□□ -1.35
CLN3-242ENST00000635958 CRIPTQ9P021 101 aa6.6□□□□□ -1.35
CLN3-242ENST00000635958 LCE2DQ5TA82 110 aaPredicted RBP6.59□□□□□ -1.35
CLN3-242ENST00000635958 MT2AP02795 61 aa6.55□□□□□ -1.36
CLN3-242ENST00000635958 H3BS24 57 aa6.54□□□□□ -1.36
CLN3-242ENST00000635958 KRTAP12-1P59990 96 aa6.53□□□□□ -1.36
CLN3-242ENST00000635958 KRTAP12-2P59991 146 aa6.51□□□□□ -1.37
CLN3-242ENST00000635958 MT1FP04733 61 aa6.5□□□□□ -1.37
CLN3-242ENST00000635958 SPINT4Q6UDR6 99 aa6.48□□□□□ -1.37
CLN3-242ENST00000635958 KRTAP10-10P60014 251 aa6.46□□□□□ -1.37
CLN3-242ENST00000635958 KRTAP9-3Q9BYQ3 159 aa6.38□□□□□ -1.39
CLN3-242ENST00000635958 C10orf95Q9H7T3 257 aa6.37□□□□□ -1.39
CLN3-242ENST00000635958 KRTAP9-7A8MTY7 169 aa6.36□□□□□ -1.39
CLN3-242ENST00000635958 R4GN34 69 aa6.36□□□□□ -1.39
CLN3-242ENST00000635958 SPRR2GQ9BYE4 73 aa6.35□□□□□ -1.39
CLN3-242ENST00000635958 KRTAP15-1Q3LI76 137 aa6.34□□□□□ -1.4
CLN3-242ENST00000635958 KRTAP19-1Q8IUB9 90 aa6.34□□□□□ -1.4
CLN3-242ENST00000635958 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.22□□□□□ -1.41
CLN3-242ENST00000635958 KRTAP19-8Q3LI54 63 aa6.22□□□□□ -1.41
CLN3-242ENST00000635958 LCE2BO14633 110 aa6.21□□□□□ -1.42
CLN3-242ENST00000635958 USH2AO75445 5202 aa6.19□□□□□ -1.42
CLN3-242ENST00000635958 PP632Q6XCG6 107 aa6.18□□□□□ -1.42
CLN3-242ENST00000635958 SSPOA2VEC9 5147 aa6.14□□□□□ -1.43
CLN3-242ENST00000635958 NDUFAF8A1L188 74 aa6.13□□□□□ -1.43
CLN3-242ENST00000635958 MT1BP07438 61 aa6.13□□□□□ -1.43
CLN3-242ENST00000635958 PLAC4Q8WY50 150 aa6.06□□□□□ -1.44
CLN3-242ENST00000635958 CAMK2N1Q7Z7J9 78 aa6.04□□□□□ -1.44
CLN3-242ENST00000635958 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
CLN3-242ENST00000635958 FCGBPQ9Y6R7 5405 aaPredicted RBP6.01□□□□□ -1.45
CLN3-242ENST00000635958 TNP1P09430 55 aa5.9□□□□□ -1.47
CLN3-242ENST00000635958 KRTAP19-6Q3LI70 58 aa5.9□□□□□ -1.47
CLN3-242ENST00000635958 LUZP6Q538Z0 58 aa5.89□□□□□ -1.47
CLN3-242ENST00000635958 MT1XP80297 61 aa5.88□□□□□ -1.47
CLN3-242ENST00000635958 KRTAP10-5P60370 271 aa5.87□□□□□ -1.47
CLN3-242ENST00000635958 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
CLN3-242ENST00000635958 SYNE2Q8WXH0 6885 aaKnown RBP5.82□□□□□ -1.48
CLN3-242ENST00000635958 MACF1Q9UPN3 7388 aaKnown RBP5.8□□□□□ -1.48
CLN3-242ENST00000635958 A0A0A0MQY5 61 aa5.68□□□□□ -1.5
CLN3-242ENST00000635958 SPRR5A0A1B0GTR4 108 aa5.68□□□□□ -1.5
CLN3-242ENST00000635958 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
CLN3-242ENST00000635958 KRTAP10-12P60413 245 aa5.6□□□□□ -1.51
CLN3-242ENST00000635958 NEBP20929 6669 aa5.6□□□□□ -1.51
CLN3-242ENST00000635958 KRTAP6-3Q3LI67 103 aa5.58□□□□□ -1.52
CLN3-242ENST00000635958 KRTAP20-1Q3LI63 56 aa5.51□□□□□ -1.53
CLN3-242ENST00000635958 KRTAP4-8A0A0G2JLE6 195 aa5.44□□□□□ -1.54
CLN3-242ENST00000635958 KRTAP4-8Q9BYQ9 185 aa5.44□□□□□ -1.54
CLN3-242ENST00000635958 KMT2DO14686 5537 aa5.43□□□□□ -1.54
CLN3-242ENST00000635958 LCE3AQ5TA76 89 aa5.42□□□□□ -1.54
CLN3-242ENST00000635958 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms