RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 NDUFC1O43677 76 aa8.98□□□□□ -0.97
UPF1-212ENST00000601689 KLKP1Q107X0 134 aa8.96□□□□□ -0.98
UPF1-212ENST00000601689 SMIM20Q8N5G0 67 aa8.95□□□□□ -0.98
UPF1-212ENST00000601689 MT-ATP8P03928 68 aa8.93□□□□□ -0.98
UPF1-212ENST00000601689 KRTAP3-3Q9BYR6 98 aa8.91□□□□□ -0.98
UPF1-212ENST00000601689 SSPOA2VEC9 5147 aa8.87□□□□□ -0.99
UPF1-212ENST00000601689 KRTAP19-1Q8IUB9 90 aa8.86□□□□□ -0.99
UPF1-212ENST00000601689 TRAV7A0A075B6U4 112 aa8.85□□□□□ -0.99
UPF1-212ENST00000601689 CRIPTQ9P021 101 aa8.8□□□□□ -1
UPF1-212ENST00000601689 H0YAA0 97 aa8.78□□□□□ -1
UPF1-212ENST00000601689 DMAC1Q96GE9 116 aa8.77□□□□□ -1.01
UPF1-212ENST00000601689 KRTAP19-6Q3LI70 58 aa8.76□□□□□ -1.01
UPF1-212ENST00000601689 SPRR2GQ9BYE4 73 aa8.73□□□□□ -1.01
UPF1-212ENST00000601689 Q5VV11 94 aa8.72□□□□□ -1.01
UPF1-212ENST00000601689 ACYP2P14621 99 aa8.7□□□□□ -1.02
UPF1-212ENST00000601689 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.68□□□□□ -1.02
UPF1-212ENST00000601689 ADM2Q7Z4H4 148 aa8.68□□□□□ -1.02
UPF1-212ENST00000601689 FCGBPQ9Y6R7 5405 aaPredicted RBP8.68□□□□□ -1.02
UPF1-212ENST00000601689 C20orf197Q8N268 126 aa8.65□□□□□ -1.02
UPF1-212ENST00000601689 SPTSSBQ8NFR3 76 aa8.63□□□□□ -1.03
UPF1-212ENST00000601689 KRTAP19-8Q3LI54 63 aa8.62□□□□□ -1.03
UPF1-212ENST00000601689 SERP2Q8N6R1 65 aa8.62□□□□□ -1.03
UPF1-212ENST00000601689 SNURFQ9Y675 71 aa8.6□□□□□ -1.03
UPF1-212ENST00000601689 CHKB-CPT1BH3BT56 60 aa8.58□□□□□ -1.04
UPF1-212ENST00000601689 KRTAP9-7A8MTY7 169 aa8.55□□□□□ -1.04
UPF1-212ENST00000601689 MT1BP07438 61 aa8.55□□□□□ -1.04
UPF1-212ENST00000601689 A6NN06 94 aa8.54□□□□□ -1.04
UPF1-212ENST00000601689 SPANXA2-OT1Q8N9U9 137 aa8.52□□□□□ -1.05
UPF1-212ENST00000601689 R4GN34 69 aa8.52□□□□□ -1.05
UPF1-212ENST00000601689 MACF1Q9UPN3 7388 aaKnown RBP8.51□□□□□ -1.05
UPF1-212ENST00000601689 M0QZ58 72 aa8.42□□□□□ -1.06
UPF1-212ENST00000601689 P0C880 135 aa8.42□□□□□ -1.06
UPF1-212ENST00000601689 PLAC4Q8WY50 150 aa8.41□□□□□ -1.06
UPF1-212ENST00000601689 COX7CP15954 63 aa8.4□□□□□ -1.06
UPF1-212ENST00000601689 SYNE2Q8WXH0 6885 aaKnown RBP8.38□□□□□ -1.07
UPF1-212ENST00000601689 KRTAP10-5P60370 271 aa8.38□□□□□ -1.07
UPF1-212ENST00000601689 KRTAP3-2Q9BYR7 98 aa8.34□□□□□ -1.07
UPF1-212ENST00000601689 PRO2289Q9P1D8 64 aa8.32□□□□□ -1.08
UPF1-212ENST00000601689 LINC01554Q52M75 96 aa8.3□□□□□ -1.08
UPF1-212ENST00000601689 COA5Q86WW8 74 aa8.24□□□□□ -1.09
UPF1-212ENST00000601689 ANAPC13Q9BS18 74 aa8.24□□□□□ -1.09
UPF1-212ENST00000601689 SEC61GP60059 68 aa8.21□□□□□ -1.1
UPF1-212ENST00000601689 KRTAP6-3Q3LI67 103 aa8.21□□□□□ -1.1
UPF1-212ENST00000601689 H7BZZ5 65 aa8.18□□□□□ -1.1
UPF1-212ENST00000601689 SERP1Q9Y6X1 66 aa8.16□□□□□ -1.1
UPF1-212ENST00000601689 MT1XP80297 61 aa8.07□□□□□ -1.12
UPF1-212ENST00000601689 CYSTM1Q9H1C7 97 aa8.07□□□□□ -1.12
UPF1-212ENST00000601689 ATP5EP56381 51 aaPredicted RBP7.97□□□□□ -1.13
UPF1-212ENST00000601689 CCDC179H3BU77 68 aa7.96□□□□□ -1.14
UPF1-212ENST00000601689 A0A1B0GU33 70 aa7.92□□□□□ -1.14
UPF1-212ENST00000601689 KRTAP12-2P59991 146 aa7.92□□□□□ -1.14
UPF1-212ENST00000601689 A0A1B0GU69 56 aa7.91□□□□□ -1.14
UPF1-212ENST00000601689 KRTAP13-4Q3LI77 160 aa7.9□□□□□ -1.14
UPF1-212ENST00000601689 CAMK2N1Q7Z7J9 78 aa7.9□□□□□ -1.14
UPF1-212ENST00000601689 KRTAP5-9P26371 169 aa7.88□□□□□ -1.15
UPF1-212ENST00000601689 KRTAP8-1Q8IUC2 63 aa7.83□□□□□ -1.16
UPF1-212ENST00000601689 MUC12Q9UKN1 5478 aa7.82□□□□□ -1.16
UPF1-212ENST00000601689 A0A0D9SG42 100 aa7.82□□□□□ -1.16
UPF1-212ENST00000601689 SPATA8Q6RVD6 105 aa7.81□□□□□ -1.16
UPF1-212ENST00000601689 PRR15LQ9BU68 103 aa7.8□□□□□ -1.16
UPF1-212ENST00000601689 NEBP20929 6669 aa7.79□□□□□ -1.16
UPF1-212ENST00000601689 KMT2DO14686 5537 aa7.79□□□□□ -1.16
UPF1-212ENST00000601689 TMEM258P61165 79 aa7.78□□□□□ -1.16
UPF1-212ENST00000601689 SPRR2FQ96RM1 72 aa7.77□□□□□ -1.17
UPF1-212ENST00000601689 SMIM26A0A096LP01 95 aa7.75□□□□□ -1.17
UPF1-212ENST00000601689 SPINT4Q6UDR6 99 aa7.75□□□□□ -1.17
UPF1-212ENST00000601689 KRTAP10-7P60409 375 aaPredicted RBP7.71□□□□□ -1.18
UPF1-212ENST00000601689 KRTAP10-12P60413 245 aa7.7□□□□□ -1.18
UPF1-212ENST00000601689 KRTAP4-8A0A0G2JLE6 195 aa7.65□□□□□ -1.18
UPF1-212ENST00000601689 KRTAP4-8Q9BYQ9 185 aa7.65□□□□□ -1.18
UPF1-212ENST00000601689 LINC01558Q9Y6Z2 57 aa7.63□□□□□ -1.19
UPF1-212ENST00000601689 SPRR2EP22531 72 aa7.61□□□□□ -1.19
UPF1-212ENST00000601689 SPRR2BP35325 72 aa7.61□□□□□ -1.19
UPF1-212ENST00000601689 SPRR2AP35326 72 aa7.61□□□□□ -1.19
UPF1-212ENST00000601689 MDN1Q9NU22 5596 aa7.61□□□□□ -1.19
UPF1-212ENST00000601689 KRTAP12-1P59990 96 aa7.6□□□□□ -1.19
UPF1-212ENST00000601689 KRTAP20-1Q3LI63 56 aa7.54□□□□□ -1.2
UPF1-212ENST00000601689 A8MU10 97 aa7.52□□□□□ -1.21
UPF1-212ENST00000601689 UQCR11O14957 56 aa7.49□□□□□ -1.21
UPF1-212ENST00000601689 LCE1AQ5T7P2 110 aa7.45□□□□□ -1.22
UPF1-212ENST00000601689 V9GYY9 64 aa7.43□□□□□ -1.22
UPF1-212ENST00000601689 KRTAP2-3P0C7H8 128 aa7.41□□□□□ -1.22
UPF1-212ENST00000601689 KRTAP2-4Q9BYR9 128 aa7.41□□□□□ -1.22
UPF1-212ENST00000601689 SPRR2DP22532 72 aa7.36□□□□□ -1.23
UPF1-212ENST00000601689 TNP1P09430 55 aa7.33□□□□□ -1.24
UPF1-212ENST00000601689 MIR22HGQ0VDD5 57 aa7.31□□□□□ -1.24
UPF1-212ENST00000601689 K7ERS5 55 aa7.28□□□□□ -1.24
UPF1-212ENST00000601689 Q1T7F1 81 aa7.26□□□□□ -1.25
UPF1-212ENST00000601689 PSPHP1O15172 72 aa7.23□□□□□ -1.25
UPF1-212ENST00000601689 C10orf95Q9H7T3 257 aa7.22□□□□□ -1.25
UPF1-212ENST00000601689 KRTAP19-7Q3SYF9 63 aa7.2□□□□□ -1.26
UPF1-212ENST00000601689 KRTAP2-2Q9BYT5 123 aa7.2□□□□□ -1.26
UPF1-212ENST00000601689 KRTAP2-1Q9BYU5 128 aa7.2□□□□□ -1.26
UPF1-212ENST00000601689 MT1EP04732 61 aa7.16□□□□□ -1.26
UPF1-212ENST00000601689 PCP4P48539 62 aa7.14□□□□□ -1.27
UPF1-212ENST00000601689 LCE3BQ5TA77 95 aa7.13□□□□□ -1.27
UPF1-212ENST00000601689 KRTAP19-5Q3LI72 72 aa7.12□□□□□ -1.27
UPF1-212ENST00000601689 KRTAP19-3Q7Z4W3 81 aa7.11□□□□□ -1.27
UPF1-212ENST00000601689 RPS28P62857 69 aaKnown RBP7.08□□□□□ -1.28
UPF1-212ENST00000601689 A6NED7 52 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms