RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 MYCBP2O75592 4640 aa10.47□□□□□ -0.73
SHKBP1-225ENST00000600733 RPL37P61927 97 aaKnown RBP10.45□□□□□ -0.74
SHKBP1-225ENST00000600733 XP32Q5T750 250 aa10.42□□□□□ -0.74
SHKBP1-225ENST00000600733 LINC01554Q52M75 96 aa10.41□□□□□ -0.74
SHKBP1-225ENST00000600733 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.75
SHKBP1-225ENST00000600733 KRTAP17-1Q9BYP8 105 aa10.38□□□□□ -0.75
SHKBP1-225ENST00000600733 RYR3Q15413 4870 aa10.32□□□□□ -0.76
SHKBP1-225ENST00000600733 KRTAP10-6P60371 365 aaPredicted RBP10.31□□□□□ -0.76
SHKBP1-225ENST00000600733 RYR1P21817 5038 aa10.31□□□□□ -0.76
SHKBP1-225ENST00000600733 S4R3F8 94 aa10.27□□□□□ -0.76
SHKBP1-225ENST00000600733 MT1HL1P0DM35 61 aa10.24□□□□□ -0.77
SHKBP1-225ENST00000600733 KRTAP13-4Q3LI77 160 aa10.24□□□□□ -0.77
SHKBP1-225ENST00000600733 KRTAP3-2Q9BYR7 98 aa10.24□□□□□ -0.77
SHKBP1-225ENST00000600733 K7ERS5 55 aa10.23□□□□□ -0.77
SHKBP1-225ENST00000600733 KIAA1109Q2LD37 5005 aa10.22□□□□□ -0.77
SHKBP1-225ENST00000600733 LPAP08519 4548 aa10.19□□□□□ -0.78
SHKBP1-225ENST00000600733 KRTAP25-1Q3LHN0 102 aa10.18□□□□□ -0.78
SHKBP1-225ENST00000600733 A0A0D9SG42 100 aa10.16□□□□□ -0.78
SHKBP1-225ENST00000600733 P0C880 135 aa10.14□□□□□ -0.79
SHKBP1-225ENST00000600733 CRIPTQ9P021 101 aa10.13□□□□□ -0.79
SHKBP1-225ENST00000600733 LRP2P98164 4655 aa10.1□□□□□ -0.79
SHKBP1-225ENST00000600733 ROMO1P60602 79 aa10.03□□□□□ -0.8
SHKBP1-225ENST00000600733 TPRXLQ17RH7 258 aa9.99□□□□□ -0.81
SHKBP1-225ENST00000600733 EPPK1P58107 5090 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-225ENST00000600733 ABCA13Q86UQ4 5058 aa9.9□□□□□ -0.82
SHKBP1-225ENST00000600733 KRTAP12-2P59991 146 aa9.9□□□□□ -0.83
SHKBP1-225ENST00000600733 KRTAP4-5Q9BYR2 181 aa9.82□□□□□ -0.84
SHKBP1-225ENST00000600733 KRTAP12-1P59990 96 aa9.81□□□□□ -0.84
SHKBP1-225ENST00000600733 SPINT4Q6UDR6 99 aa9.8□□□□□ -0.84
SHKBP1-225ENST00000600733 C10orf95Q9H7T3 257 aa9.76□□□□□ -0.85
SHKBP1-225ENST00000600733 M0QZ58 72 aa9.73□□□□□ -0.85
SHKBP1-225ENST00000600733 MUC17Q685J3 4493 aa9.63□□□□□ -0.87
SHKBP1-225ENST00000600733 SEC61BP60468 96 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-225ENST00000600733 KRTAP4-1Q9BYQ7 146 aa9.57□□□□□ -0.88
SHKBP1-225ENST00000600733 R4GN34 69 aa9.54□□□□□ -0.88
SHKBP1-225ENST00000600733 LORP23490 312 aaPredicted RBP9.49□□□□□ -0.89
SHKBP1-225ENST00000600733 H3BS24 57 aa9.48□□□□□ -0.89
SHKBP1-225ENST00000600733 J3QL48 77 aa9.46□□□□□ -0.9
SHKBP1-225ENST00000600733 HERC2O95714 4834 aa9.39□□□□□ -0.91
SHKBP1-225ENST00000600733 KRTAP19-2Q3LHN2 52 aa9.38□□□□□ -0.91
SHKBP1-225ENST00000600733 MUC2Q02817 5179 aa9.31□□□□□ -0.92
SHKBP1-225ENST00000600733 KRTAP15-1Q3LI76 137 aa9.29□□□□□ -0.92
SHKBP1-225ENST00000600733 FLGP20930 4061 aaPredicted RBP9.13□□□□□ -0.95
SHKBP1-225ENST00000600733 BIRC6Q9NR09 4857 aa9.09□□□□□ -0.95
SHKBP1-225ENST00000600733 NDUFAF8A1L188 74 aa9.07□□□□□ -0.96
SHKBP1-225ENST00000600733 CAMK2N1Q7Z7J9 78 aa9.06□□□□□ -0.96
SHKBP1-225ENST00000600733 HERC1Q15751 4861 aa9□□□□□ -0.97
SHKBP1-225ENST00000600733 PCLOQ9Y6V0 5065 aa8.97□□□□□ -0.97
SHKBP1-225ENST00000600733 PLAC4Q8WY50 150 aa8.89□□□□□ -0.99
SHKBP1-225ENST00000600733 HMCN2Q8NDA2 5059 aa8.87□□□□□ -0.99
SHKBP1-225ENST00000600733 PP632Q6XCG6 107 aa8.84□□□□□ -0.99
SHKBP1-225ENST00000600733 FAT4Q6V0I7 4981 aa8.84□□□□□ -0.99
SHKBP1-225ENST00000600733 LCE2CQ5TA81 110 aa8.8□□□□□ -1
SHKBP1-225ENST00000600733 TNP1P09430 55 aa8.7□□□□□ -1.02
SHKBP1-225ENST00000600733 SPRR2GQ9BYE4 73 aa8.63□□□□□ -1.03
SHKBP1-225ENST00000600733 KRTAP19-1Q8IUB9 90 aa8.61□□□□□ -1.03
SHKBP1-225ENST00000600733 M0R2T5 61 aa8.61□□□□□ -1.03
SHKBP1-225ENST00000600733 RNF213Q63HN8 5207 aa8.57□□□□□ -1.04
SHKBP1-225ENST00000600733 MT1HP80294 61 aa8.56□□□□□ -1.04
SHKBP1-225ENST00000600733 UBR4Q5T4S7 5183 aa8.53□□□□□ -1.04
SHKBP1-225ENST00000600733 KRTAP23-1A1A580 65 aa8.52□□□□□ -1.04
SHKBP1-225ENST00000600733 LUZP6Q538Z0 58 aa8.46□□□□□ -1.06
SHKBP1-225ENST00000600733 MT1FP04733 61 aa8.45□□□□□ -1.06
SHKBP1-225ENST00000600733 MT2AP02795 61 aa8.43□□□□□ -1.06
SHKBP1-225ENST00000600733 KRTAP10-10P60014 251 aa8.43□□□□□ -1.06
SHKBP1-225ENST00000600733 KRTAP9-8Q9BYQ0 159 aa8.38□□□□□ -1.07
SHKBP1-225ENST00000600733 LCE3AQ5TA76 89 aa8.29□□□□□ -1.08
SHKBP1-225ENST00000600733 SPRR5A0A1B0GTR4 108 aa8.27□□□□□ -1.09
SHKBP1-225ENST00000600733 KRTAP19-8Q3LI54 63 aa8.23□□□□□ -1.09
SHKBP1-225ENST00000600733 MT1BP07438 61 aa8.16□□□□□ -1.1
SHKBP1-225ENST00000600733 KRTAP10-5P60370 271 aa8.13□□□□□ -1.11
SHKBP1-225ENST00000600733 MT1XP80297 61 aa8.12□□□□□ -1.11
SHKBP1-225ENST00000600733 KRTAP8-1Q8IUC2 63 aa8.04□□□□□ -1.12
SHKBP1-225ENST00000600733 KRTAP9-3Q9BYQ3 159 aa8.01□□□□□ -1.13
SHKBP1-225ENST00000600733 A0A0A0MQY5 61 aa7.99□□□□□ -1.13
SHKBP1-225ENST00000600733 KRTAP10-12P60413 245 aa7.94□□□□□ -1.14
SHKBP1-225ENST00000600733 KRTAP10-7P60409 375 aaPredicted RBP7.91□□□□□ -1.14
SHKBP1-225ENST00000600733 KRTAP12-3P60328 96 aa7.87□□□□□ -1.15
SHKBP1-225ENST00000600733 PRO2289Q9P1D8 64 aa7.75□□□□□ -1.17
SHKBP1-225ENST00000600733 LCE2BO14633 110 aa7.72□□□□□ -1.17
SHKBP1-225ENST00000600733 USH2AO75445 5202 aa7.66□□□□□ -1.18
SHKBP1-225ENST00000600733 KRTAP19-5Q3LI72 72 aa7.57□□□□□ -1.2
SHKBP1-225ENST00000600733 KMT2DO14686 5537 aa7.56□□□□□ -1.2
SHKBP1-225ENST00000600733 LCE2AQ5TA79 106 aaPredicted RBP7.52□□□□□ -1.21
SHKBP1-225ENST00000600733 KRTAP4-8A0A0G2JLE6 195 aa7.44□□□□□ -1.22
SHKBP1-225ENST00000600733 KRTAP4-8Q9BYQ9 185 aa7.44□□□□□ -1.22
SHKBP1-225ENST00000600733 LCE3CQ5T5A8 94 aa7.41□□□□□ -1.22
SHKBP1-225ENST00000600733 KRTAP19-7Q3SYF9 63 aa7.23□□□□□ -1.25
SHKBP1-225ENST00000600733 INE1O15225 51 aa7.22□□□□□ -1.25
SHKBP1-225ENST00000600733 KRTAP9-6A8MVA2 160 aa7.19□□□□□ -1.26
SHKBP1-225ENST00000600733 KRTAP4-7Q9BYR0 210 aa7.14□□□□□ -1.27
SHKBP1-225ENST00000600733 SSPOA2VEC9 5147 aa7.07□□□□□ -1.28
SHKBP1-225ENST00000600733 MT1LQ93083 61 aa7.01□□□□□ -1.29
SHKBP1-225ENST00000600733 MT1EP04732 61 aa7.01□□□□□ -1.29
SHKBP1-225ENST00000600733 FSIP2Q5CZC0 6907 aa6.91□□□□□ -1.3
SHKBP1-225ENST00000600733 KRTAP2-3P0C7H8 128 aa6.88□□□□□ -1.31
SHKBP1-225ENST00000600733 KRTAP19-4Q3LI73 84 aa6.88□□□□□ -1.31
SHKBP1-225ENST00000600733 KRTAP2-4Q9BYR9 128 aa6.88□□□□□ -1.31
SHKBP1-225ENST00000600733 KRTAP2-1Q9BYU5 128 aa6.88□□□□□ -1.31
SHKBP1-225ENST00000600733 KRTAP19-6Q3LI70 58 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms