RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAM236AA0A1B0GUQ0 79 aa7.33□□□□□ -1.24
TRIM28-213ENST00000598355 FAM236BA0A1B0GV22 79 aa7.33□□□□□ -1.24
TRIM28-213ENST00000598355 MP68P56378 58 aa7.33□□□□□ -1.24
TRIM28-213ENST00000598355 SPRR2GQ9BYE4 73 aa7.32□□□□□ -1.24
TRIM28-213ENST00000598355 H3BPC8 53 aa7.31□□□□□ -1.24
TRIM28-213ENST00000598355 IMUPQ9GZP8 106 aa7.3□□□□□ -1.24
TRIM28-213ENST00000598355 K7ERU9 68 aa7.27□□□□□ -1.25
TRIM28-213ENST00000598355 KRTAP19-8Q3LI54 63 aa7.26□□□□□ -1.25
TRIM28-213ENST00000598355 H0YAA0 97 aa7.25□□□□□ -1.25
TRIM28-213ENST00000598355 NDUFC1O43677 76 aa7.24□□□□□ -1.25
TRIM28-213ENST00000598355 MT-ATP8P03928 68 aa7.24□□□□□ -1.25
TRIM28-213ENST00000598355 MT1BP07438 61 aa7.24□□□□□ -1.25
TRIM28-213ENST00000598355 SCGB1A1P11684 91 aa7.23□□□□□ -1.25
TRIM28-213ENST00000598355 KRTAP9-7A8MTY7 169 aa7.22□□□□□ -1.25
TRIM28-213ENST00000598355 DMAC1Q96GE9 116 aa7.19□□□□□ -1.26
TRIM28-213ENST00000598355 CRIPTQ9P021 101 aa7.19□□□□□ -1.26
TRIM28-213ENST00000598355 Q5VV11 94 aa7.17□□□□□ -1.26
TRIM28-213ENST00000598355 SMIM20Q8N5G0 67 aa7.14□□□□□ -1.27
TRIM28-213ENST00000598355 TRAV7A0A075B6U4 112 aa7.13□□□□□ -1.27
TRIM28-213ENST00000598355 MACF1Q9UPN3 7388 aaKnown RBP7.13□□□□□ -1.27
TRIM28-213ENST00000598355 ADM2Q7Z4H4 148 aa7.07□□□□□ -1.28
TRIM28-213ENST00000598355 KRTAP10-5P60370 271 aa7.04□□□□□ -1.28
TRIM28-213ENST00000598355 A6NN06 94 aa7.03□□□□□ -1.28
TRIM28-213ENST00000598355 P0C880 135 aa6.98□□□□□ -1.29
TRIM28-213ENST00000598355 SYNE2Q8WXH0 6885 aaKnown RBP6.96□□□□□ -1.3
TRIM28-213ENST00000598355 ACYP2P14621 99 aa6.96□□□□□ -1.3
TRIM28-213ENST00000598355 KRTAP3-2Q9BYR7 98 aa6.96□□□□□ -1.3
TRIM28-213ENST00000598355 C20orf197Q8N268 126 aa6.94□□□□□ -1.3
TRIM28-213ENST00000598355 SNURFQ9Y675 71 aa6.94□□□□□ -1.3
TRIM28-213ENST00000598355 KRTAP6-3Q3LI67 103 aa6.93□□□□□ -1.3
TRIM28-213ENST00000598355 SERP2Q8N6R1 65 aa6.93□□□□□ -1.3
TRIM28-213ENST00000598355 SPANXA2-OT1Q8N9U9 137 aa6.91□□□□□ -1.3
TRIM28-213ENST00000598355 R4GN34 69 aa6.89□□□□□ -1.31
TRIM28-213ENST00000598355 SPTSSBQ8NFR3 76 aa6.85□□□□□ -1.31
TRIM28-213ENST00000598355 M0QZ58 72 aa6.83□□□□□ -1.32
TRIM28-213ENST00000598355 MT1XP80297 61 aa6.81□□□□□ -1.32
TRIM28-213ENST00000598355 CHKB-CPT1BH3BT56 60 aa6.79□□□□□ -1.32
TRIM28-213ENST00000598355 PLAC4Q8WY50 150 aa6.76□□□□□ -1.33
TRIM28-213ENST00000598355 PRO2289Q9P1D8 64 aa6.76□□□□□ -1.33
TRIM28-213ENST00000598355 COX7CP15954 63 aa6.75□□□□□ -1.33
TRIM28-213ENST00000598355 KRTAP5-9P26371 169 aa6.72□□□□□ -1.33
TRIM28-213ENST00000598355 LINC01554Q52M75 96 aa6.68□□□□□ -1.34
TRIM28-213ENST00000598355 H7BZZ5 65 aa6.66□□□□□ -1.34
TRIM28-213ENST00000598355 COA5Q86WW8 74 aa6.66□□□□□ -1.34
TRIM28-213ENST00000598355 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
TRIM28-213ENST00000598355 KRTAP12-2P59991 146 aa6.64□□□□□ -1.35
TRIM28-213ENST00000598355 MUC12Q9UKN1 5478 aa6.6□□□□□ -1.35
TRIM28-213ENST00000598355 KRTAP13-4Q3LI77 160 aa6.58□□□□□ -1.36
TRIM28-213ENST00000598355 NEBP20929 6669 aa6.58□□□□□ -1.36
TRIM28-213ENST00000598355 KMT2DO14686 5537 aa6.57□□□□□ -1.36
TRIM28-213ENST00000598355 ANAPC13Q9BS18 74 aa6.52□□□□□ -1.37
TRIM28-213ENST00000598355 KRTAP10-12P60413 245 aa6.48□□□□□ -1.37
TRIM28-213ENST00000598355 KRTAP10-7P60409 375 aaPredicted RBP6.47□□□□□ -1.37
TRIM28-213ENST00000598355 KRTAP8-1Q8IUC2 63 aa6.46□□□□□ -1.38
TRIM28-213ENST00000598355 MDN1Q9NU22 5596 aa6.46□□□□□ -1.38
TRIM28-213ENST00000598355 SPRR2FQ96RM1 72 aa6.45□□□□□ -1.38
TRIM28-213ENST00000598355 KRTAP4-8A0A0G2JLE6 195 aa6.43□□□□□ -1.38
TRIM28-213ENST00000598355 SEC61GP60059 68 aa6.43□□□□□ -1.38
TRIM28-213ENST00000598355 KRTAP4-8Q9BYQ9 185 aa6.43□□□□□ -1.38
TRIM28-213ENST00000598355 SERP1Q9Y6X1 66 aa6.42□□□□□ -1.38
TRIM28-213ENST00000598355 CCDC179H3BU77 68 aa6.41□□□□□ -1.38
TRIM28-213ENST00000598355 A0A1B0GU33 70 aa6.36□□□□□ -1.39
TRIM28-213ENST00000598355 ATP5EP56381 51 aaPredicted RBP6.34□□□□□ -1.39
TRIM28-213ENST00000598355 SPATA8Q6RVD6 105 aa6.34□□□□□ -1.39
TRIM28-213ENST00000598355 SPRR2EP22531 72 aa6.32□□□□□ -1.4
TRIM28-213ENST00000598355 SPRR2BP35325 72 aa6.32□□□□□ -1.4
TRIM28-213ENST00000598355 SPRR2AP35326 72 aa6.32□□□□□ -1.4
TRIM28-213ENST00000598355 KRTAP20-1Q3LI63 56 aa6.32□□□□□ -1.4
TRIM28-213ENST00000598355 LCE1AQ5T7P2 110 aa6.32□□□□□ -1.4
TRIM28-213ENST00000598355 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
TRIM28-213ENST00000598355 A0A0D9SG42 100 aa6.29□□□□□ -1.4
TRIM28-213ENST00000598355 A0A1B0GU69 56 aa6.28□□□□□ -1.4
TRIM28-213ENST00000598355 KRTAP12-1P59990 96 aa6.27□□□□□ -1.41
TRIM28-213ENST00000598355 TMEM258P61165 79 aa6.21□□□□□ -1.42
TRIM28-213ENST00000598355 KRTAP2-3P0C7H8 128 aa6.19□□□□□ -1.42
TRIM28-213ENST00000598355 SPINT4Q6UDR6 99 aa6.19□□□□□ -1.42
TRIM28-213ENST00000598355 KRTAP2-4Q9BYR9 128 aa6.19□□□□□ -1.42
TRIM28-213ENST00000598355 SMIM26A0A096LP01 95 aa6.18□□□□□ -1.42
TRIM28-213ENST00000598355 LINC01558Q9Y6Z2 57 aa6.15□□□□□ -1.42
TRIM28-213ENST00000598355 A8MU10 97 aa6.13□□□□□ -1.43
TRIM28-213ENST00000598355 PRR15LQ9BU68 103 aa6.12□□□□□ -1.43
TRIM28-213ENST00000598355 SPRR2DP22532 72 aa6.11□□□□□ -1.43
TRIM28-213ENST00000598355 KRTAP19-7Q3SYF9 63 aa6.09□□□□□ -1.43
TRIM28-213ENST00000598355 MT1EP04732 61 aa6.02□□□□□ -1.45
TRIM28-213ENST00000598355 KRTAP2-2Q9BYT5 123 aa6.01□□□□□ -1.45
TRIM28-213ENST00000598355 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
TRIM28-213ENST00000598355 LCE5AQ5TCM9 118 aa5.97□□□□□ -1.45
TRIM28-213ENST00000598355 C10orf95Q9H7T3 257 aa5.97□□□□□ -1.45
TRIM28-213ENST00000598355 UQCR11O14957 56 aa5.95□□□□□ -1.46
TRIM28-213ENST00000598355 LCE3BQ5TA77 95 aa5.94□□□□□ -1.46
TRIM28-213ENST00000598355 KRTAP19-3Q7Z4W3 81 aa5.94□□□□□ -1.46
TRIM28-213ENST00000598355 KRTAP19-5Q3LI72 72 aa5.92□□□□□ -1.46
TRIM28-213ENST00000598355 TNP1P09430 55 aa5.89□□□□□ -1.47
TRIM28-213ENST00000598355 LCE3AQ5TA76 89 aa5.85□□□□□ -1.47
TRIM28-213ENST00000598355 Q1T7F1 81 aa5.82□□□□□ -1.48
TRIM28-213ENST00000598355 V9GYY9 64 aa5.82□□□□□ -1.48
TRIM28-213ENST00000598355 MT1GP13640 62 aa5.8□□□□□ -1.48
TRIM28-213ENST00000598355 MIR22HGQ0VDD5 57 aa5.8□□□□□ -1.48
TRIM28-213ENST00000598355 MT1LQ93083 61 aa5.78□□□□□ -1.48
TRIM28-213ENST00000598355 DSTQ03001 7570 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms