RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ACYP2P14621 99 aa9.09□□□□□ -0.95
SHKBP1-216ENST00000598201 LINC01558Q9Y6Z2 57 aa9.09□□□□□ -0.95
SHKBP1-216ENST00000598201 XP32Q5T750 250 aa9.04□□□□□ -0.96
SHKBP1-216ENST00000598201 H3BS24 57 aa9.03□□□□□ -0.96
SHKBP1-216ENST00000598201 SPINK7P58062 85 aa9.03□□□□□ -0.96
SHKBP1-216ENST00000598201 RPL37P61927 97 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-216ENST00000598201 HMCN2Q8NDA2 5059 aa8.98□□□□□ -0.97
SHKBP1-216ENST00000598201 LINC01554Q52M75 96 aa8.96□□□□□ -0.97
SHKBP1-216ENST00000598201 KRTAP3-1Q9BYR8 98 aa8.92□□□□□ -0.98
SHKBP1-216ENST00000598201 TPRXLQ17RH7 258 aa8.89□□□□□ -0.99
SHKBP1-216ENST00000598201 LPAP08519 4548 aa8.87□□□□□ -0.99
SHKBP1-216ENST00000598201 LRP2P98164 4655 aa8.85□□□□□ -0.99
SHKBP1-216ENST00000598201 PRAC1Q96KF2 57 aa8.83□□□□□ -1
SHKBP1-216ENST00000598201 COX6B2Q6YFQ2 88 aa8.82□□□□□ -1
SHKBP1-216ENST00000598201 ADM2Q7Z4H4 148 aa8.71□□□□□ -1.01
SHKBP1-216ENST00000598201 UBR4Q5T4S7 5183 aa8.69□□□□□ -1.02
SHKBP1-216ENST00000598201 A0A1B0GU69 56 aa8.69□□□□□ -1.02
SHKBP1-216ENST00000598201 SPATA8Q6RVD6 105 aa8.67□□□□□ -1.02
SHKBP1-216ENST00000598201 SEC61BP60468 96 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-216ENST00000598201 KRTAP3-3Q9BYR6 98 aa8.58□□□□□ -1.04
SHKBP1-216ENST00000598201 CSAG1Q6PB30 78 aa8.54□□□□□ -1.04
SHKBP1-216ENST00000598201 S4R3F8 94 aa8.53□□□□□ -1.04
SHKBP1-216ENST00000598201 MIR22HGQ0VDD5 57 aa8.52□□□□□ -1.05
SHKBP1-216ENST00000598201 H1FX-AS1Q4G0G2 97 aa8.52□□□□□ -1.05
SHKBP1-216ENST00000598201 RNF213Q63HN8 5207 aa8.51□□□□□ -1.05
SHKBP1-216ENST00000598201 UQCR11O14957 56 aa8.51□□□□□ -1.05
SHKBP1-216ENST00000598201 MUC17Q685J3 4493 aa8.51□□□□□ -1.05
SHKBP1-216ENST00000598201 KRTAP4-1Q9BYQ7 146 aa8.5□□□□□ -1.05
SHKBP1-216ENST00000598201 MUC2Q02817 5179 aa8.48□□□□□ -1.05
SHKBP1-216ENST00000598201 ROMO1P60602 79 aa8.37□□□□□ -1.07
SHKBP1-216ENST00000598201 A0A1B0GU33 70 aa8.36□□□□□ -1.07
SHKBP1-216ENST00000598201 KRTAP10-6P60371 365 aaPredicted RBP8.34□□□□□ -1.07
SHKBP1-216ENST00000598201 KRTAP3-2Q9BYR7 98 aa8.34□□□□□ -1.07
SHKBP1-216ENST00000598201 H0YAA0 97 aa8.33□□□□□ -1.08
SHKBP1-216ENST00000598201 KRTAP25-1Q3LHN0 102 aa8.31□□□□□ -1.08
SHKBP1-216ENST00000598201 KRTAP19-2Q3LHN2 52 aa8.3□□□□□ -1.08
SHKBP1-216ENST00000598201 P0C880 135 aa8.25□□□□□ -1.09
SHKBP1-216ENST00000598201 KRTAP13-4Q3LI77 160 aa8.18□□□□□ -1.1
SHKBP1-216ENST00000598201 FAT4Q6V0I7 4981 aa8.15□□□□□ -1.1
SHKBP1-216ENST00000598201 LCE2CQ5TA81 110 aa8.11□□□□□ -1.11
SHKBP1-216ENST00000598201 FLGP20930 4061 aaPredicted RBP8.08□□□□□ -1.12
SHKBP1-216ENST00000598201 A0A0D9SG42 100 aa8.04□□□□□ -1.12
SHKBP1-216ENST00000598201 LCE2AQ5TA79 106 aaPredicted RBP8.01□□□□□ -1.13
SHKBP1-216ENST00000598201 MT1HP80294 61 aa7.99□□□□□ -1.13
SHKBP1-216ENST00000598201 M0QZ58 72 aa7.94□□□□□ -1.14
SHKBP1-216ENST00000598201 LORP23490 312 aaPredicted RBP7.94□□□□□ -1.14
SHKBP1-216ENST00000598201 K7ERS5 55 aa7.9□□□□□ -1.14
SHKBP1-216ENST00000598201 M0R2T5 61 aa7.9□□□□□ -1.14
SHKBP1-216ENST00000598201 R4GN34 69 aa7.87□□□□□ -1.15
SHKBP1-216ENST00000598201 KRTAP12-2P59991 146 aa7.87□□□□□ -1.15
SHKBP1-216ENST00000598201 KRTAP12-1P59990 96 aa7.85□□□□□ -1.15
SHKBP1-216ENST00000598201 A0A0A0MQY5 61 aa7.82□□□□□ -1.16
SHKBP1-216ENST00000598201 SPINT4Q6UDR6 99 aa7.8□□□□□ -1.16
SHKBP1-216ENST00000598201 KRTAP15-1Q3LI76 137 aa7.74□□□□□ -1.17
SHKBP1-216ENST00000598201 NDUFAF8A1L188 74 aa7.74□□□□□ -1.17
SHKBP1-216ENST00000598201 CRIPTQ9P021 101 aa7.72□□□□□ -1.17
SHKBP1-216ENST00000598201 KRTAP9-8Q9BYQ0 159 aa7.63□□□□□ -1.19
SHKBP1-216ENST00000598201 MT2AP02795 61 aa7.55□□□□□ -1.2
SHKBP1-216ENST00000598201 MT1FP04733 61 aa7.53□□□□□ -1.2
SHKBP1-216ENST00000598201 KRTAP10-10P60014 251 aa7.5□□□□□ -1.21
SHKBP1-216ENST00000598201 KRTAP19-1Q8IUB9 90 aa7.49□□□□□ -1.21
SHKBP1-216ENST00000598201 SPRR2GQ9BYE4 73 aa7.48□□□□□ -1.21
SHKBP1-216ENST00000598201 LCE2DQ5TA82 110 aaPredicted RBP7.45□□□□□ -1.22
SHKBP1-216ENST00000598201 C10orf95Q9H7T3 257 aa7.43□□□□□ -1.22
SHKBP1-216ENST00000598201 KRTAP9-2Q9BYQ4 174 aa7.42□□□□□ -1.22
SHKBP1-216ENST00000598201 LUZP6Q538Z0 58 aa7.4□□□□□ -1.22
SHKBP1-216ENST00000598201 CAMK2N1Q7Z7J9 78 aa7.4□□□□□ -1.22
SHKBP1-216ENST00000598201 KRTAP9-3Q9BYQ3 159 aa7.37□□□□□ -1.23
SHKBP1-216ENST00000598201 PLAC4Q8WY50 150 aa7.27□□□□□ -1.25
SHKBP1-216ENST00000598201 LCE2BO14633 110 aa7.24□□□□□ -1.25
SHKBP1-216ENST00000598201 KRTAP19-8Q3LI54 63 aa7.24□□□□□ -1.25
SHKBP1-216ENST00000598201 FSIP2Q5CZC0 6907 aa7.23□□□□□ -1.25
SHKBP1-216ENST00000598201 MT1BP07438 61 aa7.18□□□□□ -1.26
SHKBP1-216ENST00000598201 USH2AO75445 5202 aa7.16□□□□□ -1.26
SHKBP1-216ENST00000598201 CRCT1Q9UGL9 99 aa7.08□□□□□ -1.28
SHKBP1-216ENST00000598201 TNP1P09430 55 aa7.07□□□□□ -1.28
SHKBP1-216ENST00000598201 KRTAP9-6A0A140TA67 174 aa7.02□□□□□ -1.29
SHKBP1-216ENST00000598201 MT1XP80297 61 aa7.01□□□□□ -1.29
SHKBP1-216ENST00000598201 KRTAP10-5P60370 271 aa7□□□□□ -1.29
SHKBP1-216ENST00000598201 SSPOA2VEC9 5147 aa7□□□□□ -1.29
SHKBP1-216ENST00000598201 PP632Q6XCG6 107 aa6.96□□□□□ -1.3
SHKBP1-216ENST00000598201 KRTAP19-6Q3LI70 58 aa6.91□□□□□ -1.3
SHKBP1-216ENST00000598201 KRTAP23-1A1A580 65 aa6.88□□□□□ -1.31
SHKBP1-216ENST00000598201 FCGBPQ9Y6R7 5405 aaPredicted RBP6.81□□□□□ -1.32
SHKBP1-216ENST00000598201 LCE3AQ5TA76 89 aa6.8□□□□□ -1.32
SHKBP1-216ENST00000598201 PRO2289Q9P1D8 64 aa6.78□□□□□ -1.32
SHKBP1-216ENST00000598201 KRTAP10-7P60409 375 aaPredicted RBP6.77□□□□□ -1.33
SHKBP1-216ENST00000598201 KRTAP10-12P60413 245 aa6.69□□□□□ -1.34
SHKBP1-216ENST00000598201 KRTAP8-1Q8IUC2 63 aa6.62□□□□□ -1.35
SHKBP1-216ENST00000598201 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.57□□□□□ -1.36
SHKBP1-216ENST00000598201 MACF1Q9UPN3 7388 aaKnown RBP6.56□□□□□ -1.36
SHKBP1-216ENST00000598201 SPRR5A0A1B0GTR4 108 aa6.54□□□□□ -1.36
SHKBP1-216ENST00000598201 KMT2DO14686 5537 aa6.5□□□□□ -1.37
SHKBP1-216ENST00000598201 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
SHKBP1-216ENST00000598201 KRTAP4-8A0A0G2JLE6 195 aa6.46□□□□□ -1.37
SHKBP1-216ENST00000598201 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.37
SHKBP1-216ENST00000598201 SYNE2Q8WXH0 6885 aaKnown RBP6.44□□□□□ -1.38
SHKBP1-216ENST00000598201 KRTAP19-5Q3LI72 72 aa6.4□□□□□ -1.38
SHKBP1-216ENST00000598201 INE1O15225 51 aa6.38□□□□□ -1.39
SHKBP1-216ENST00000598201 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms