RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 A8MUN3 132 aa9.25□□□□□ -0.93
SHKBP1-214ENST00000597396 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.25□□□□□ -0.93
SHKBP1-214ENST00000597396 KRTAP9-3Q9BYQ3 159 aa9.23□□□□□ -0.93
SHKBP1-214ENST00000597396 KRTAP9-7A8MTY7 169 aa9.22□□□□□ -0.93
SHKBP1-214ENST00000597396 USH2AO75445 5202 aa9.21□□□□□ -0.94
SHKBP1-214ENST00000597396 SSPOA2VEC9 5147 aa9.19□□□□□ -0.94
SHKBP1-214ENST00000597396 KRTAP3-3Q9BYR6 98 aa9.18□□□□□ -0.94
SHKBP1-214ENST00000597396 NDUFC1O43677 76 aa9.15□□□□□ -0.94
SHKBP1-214ENST00000597396 LCE2BO14633 110 aa9.11□□□□□ -0.95
SHKBP1-214ENST00000597396 SERP2Q8N6R1 65 aa9.09□□□□□ -0.95
SHKBP1-214ENST00000597396 DMAC1Q96GE9 116 aa9.09□□□□□ -0.95
SHKBP1-214ENST00000597396 SNURFQ9Y675 71 aa9.07□□□□□ -0.96
SHKBP1-214ENST00000597396 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
SHKBP1-214ENST00000597396 C20orf197Q8N268 126 aa9.03□□□□□ -0.96
SHKBP1-214ENST00000597396 FCGBPQ9Y6R7 5405 aaPredicted RBP9.01□□□□□ -0.97
SHKBP1-214ENST00000597396 ACYP2P14621 99 aa8.96□□□□□ -0.98
SHKBP1-214ENST00000597396 H0YAA0 97 aa8.93□□□□□ -0.98
SHKBP1-214ENST00000597396 COX7CP15954 63 aa8.9□□□□□ -0.98
SHKBP1-214ENST00000597396 ADM2Q7Z4H4 148 aa8.88□□□□□ -0.99
SHKBP1-214ENST00000597396 SPANXA2-OT1Q8N9U9 137 aa8.88□□□□□ -0.99
SHKBP1-214ENST00000597396 CRIPTQ9P021 101 aa8.86□□□□□ -0.99
SHKBP1-214ENST00000597396 SPRR2GQ9BYE4 73 aa8.85□□□□□ -0.99
SHKBP1-214ENST00000597396 CHKB-CPT1BH3BT56 60 aa8.83□□□□□ -1
SHKBP1-214ENST00000597396 KRTAP19-6Q3LI70 58 aa8.82□□□□□ -1
SHKBP1-214ENST00000597396 SPTSSBQ8NFR3 76 aa8.82□□□□□ -1
SHKBP1-214ENST00000597396 ANAPC13Q9BS18 74 aa8.78□□□□□ -1
SHKBP1-214ENST00000597396 Q5VV11 94 aa8.76□□□□□ -1.01
SHKBP1-214ENST00000597396 MACF1Q9UPN3 7388 aaKnown RBP8.75□□□□□ -1.01
SHKBP1-214ENST00000597396 KRTAP19-8Q3LI54 63 aa8.74□□□□□ -1.01
SHKBP1-214ENST00000597396 SYNE2Q8WXH0 6885 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-214ENST00000597396 MT1BP07438 61 aa8.7□□□□□ -1.02
SHKBP1-214ENST00000597396 P0C880 135 aa8.7□□□□□ -1.02
SHKBP1-214ENST00000597396 CYSTM1Q9H1C7 97 aa8.68□□□□□ -1.02
SHKBP1-214ENST00000597396 H7BZZ5 65 aa8.67□□□□□ -1.02
SHKBP1-214ENST00000597396 KRTAP3-2Q9BYR7 98 aa8.65□□□□□ -1.02
SHKBP1-214ENST00000597396 COA5Q86WW8 74 aa8.64□□□□□ -1.03
SHKBP1-214ENST00000597396 R4GN34 69 aa8.64□□□□□ -1.03
SHKBP1-214ENST00000597396 M0QZ58 72 aa8.59□□□□□ -1.03
SHKBP1-214ENST00000597396 CCDC179H3BU77 68 aa8.57□□□□□ -1.04
SHKBP1-214ENST00000597396 KRTAP6-3Q3LI67 103 aa8.56□□□□□ -1.04
SHKBP1-214ENST00000597396 A6NN06 94 aa8.52□□□□□ -1.05
SHKBP1-214ENST00000597396 LINC01554Q52M75 96 aa8.46□□□□□ -1.06
SHKBP1-214ENST00000597396 PLAC4Q8WY50 150 aa8.45□□□□□ -1.06
SHKBP1-214ENST00000597396 KRTAP10-5P60370 271 aa8.44□□□□□ -1.06
SHKBP1-214ENST00000597396 ATP5EP56381 51 aaPredicted RBP8.39□□□□□ -1.07
SHKBP1-214ENST00000597396 SEC61GP60059 68 aa8.39□□□□□ -1.07
SHKBP1-214ENST00000597396 SERP1Q9Y6X1 66 aa8.37□□□□□ -1.07
SHKBP1-214ENST00000597396 PRO2289Q9P1D8 64 aa8.29□□□□□ -1.08
SHKBP1-214ENST00000597396 TMEM258P61165 79 aa8.28□□□□□ -1.08
SHKBP1-214ENST00000597396 KRTAP13-4Q3LI77 160 aa8.25□□□□□ -1.09
SHKBP1-214ENST00000597396 MT1XP80297 61 aa8.23□□□□□ -1.09
SHKBP1-214ENST00000597396 NEBP20929 6669 aa8.22□□□□□ -1.09
SHKBP1-214ENST00000597396 A0A1B0GU69 56 aa8.2□□□□□ -1.1
SHKBP1-214ENST00000597396 A0A1B0GU33 70 aa8.18□□□□□ -1.1
SHKBP1-214ENST00000597396 MUC12Q9UKN1 5478 aa8.13□□□□□ -1.11
SHKBP1-214ENST00000597396 SPATA8Q6RVD6 105 aa8.12□□□□□ -1.11
SHKBP1-214ENST00000597396 A0A0D9SG42 100 aa8.09□□□□□ -1.11
SHKBP1-214ENST00000597396 KRTAP20-1Q3LI63 56 aa8.08□□□□□ -1.12
SHKBP1-214ENST00000597396 PRR15LQ9BU68 103 aa8.07□□□□□ -1.12
SHKBP1-214ENST00000597396 KRTAP5-9P26371 169 aa8.04□□□□□ -1.12
SHKBP1-214ENST00000597396 LINC01558Q9Y6Z2 57 aa8.03□□□□□ -1.12
SHKBP1-214ENST00000597396 CAMK2N1Q7Z7J9 78 aa8.02□□□□□ -1.13
SHKBP1-214ENST00000597396 KRTAP12-2P59991 146 aa7.98□□□□□ -1.13
SHKBP1-214ENST00000597396 SMIM26A0A096LP01 95 aa7.97□□□□□ -1.13
SHKBP1-214ENST00000597396 SPINT4Q6UDR6 99 aa7.96□□□□□ -1.14
SHKBP1-214ENST00000597396 KMT2DO14686 5537 aa7.93□□□□□ -1.14
SHKBP1-214ENST00000597396 KRTAP12-1P59990 96 aa7.9□□□□□ -1.14
SHKBP1-214ENST00000597396 A8MU10 97 aa7.88□□□□□ -1.15
SHKBP1-214ENST00000597396 KRTAP10-7P60409 375 aaPredicted RBP7.87□□□□□ -1.15
SHKBP1-214ENST00000597396 PCP4P48539 62 aa7.86□□□□□ -1.15
SHKBP1-214ENST00000597396 MDN1Q9NU22 5596 aa7.85□□□□□ -1.15
SHKBP1-214ENST00000597396 KRTAP10-12P60413 245 aa7.83□□□□□ -1.16
SHKBP1-214ENST00000597396 KRTAP8-1Q8IUC2 63 aa7.83□□□□□ -1.16
SHKBP1-214ENST00000597396 UQCR11O14957 56 aa7.79□□□□□ -1.16
SHKBP1-214ENST00000597396 SPRR2FQ96RM1 72 aa7.79□□□□□ -1.16
SHKBP1-214ENST00000597396 V9GYY9 64 aa7.79□□□□□ -1.16
SHKBP1-214ENST00000597396 KRTAP4-8A0A0G2JLE6 195 aa7.78□□□□□ -1.16
SHKBP1-214ENST00000597396 KRTAP2-3P0C7H8 128 aa7.78□□□□□ -1.16
SHKBP1-214ENST00000597396 KRTAP4-8Q9BYQ9 185 aa7.78□□□□□ -1.16
SHKBP1-214ENST00000597396 KRTAP2-4Q9BYR9 128 aa7.78□□□□□ -1.16
SHKBP1-214ENST00000597396 SPRR2EP22531 72 aa7.74□□□□□ -1.17
SHKBP1-214ENST00000597396 SPRR2BP35325 72 aa7.74□□□□□ -1.17
SHKBP1-214ENST00000597396 SPRR2AP35326 72 aa7.74□□□□□ -1.17
SHKBP1-214ENST00000597396 Q1T7F1 81 aa7.71□□□□□ -1.18
SHKBP1-214ENST00000597396 PSPHP1O15172 72 aa7.69□□□□□ -1.18
SHKBP1-214ENST00000597396 MIR22HGQ0VDD5 57 aa7.64□□□□□ -1.19
SHKBP1-214ENST00000597396 RPS28P62857 69 aaKnown RBP7.6□□□□□ -1.19
SHKBP1-214ENST00000597396 LCE1AQ5T7P2 110 aa7.57□□□□□ -1.2
SHKBP1-214ENST00000597396 KRTAP2-2Q9BYT5 123 aa7.52□□□□□ -1.21
SHKBP1-214ENST00000597396 KRTAP2-1Q9BYU5 128 aa7.52□□□□□ -1.21
SHKBP1-214ENST00000597396 C10orf95Q9H7T3 257 aa7.51□□□□□ -1.21
SHKBP1-214ENST00000597396 SPRR2DP22532 72 aa7.49□□□□□ -1.21
SHKBP1-214ENST00000597396 K7ERS5 55 aa7.47□□□□□ -1.21
SHKBP1-214ENST00000597396 TNP1P09430 55 aa7.47□□□□□ -1.21
SHKBP1-214ENST00000597396 A6NED7 52 aa7.46□□□□□ -1.22
SHKBP1-214ENST00000597396 KRTAP19-7Q3SYF9 63 aa7.34□□□□□ -1.23
SHKBP1-214ENST00000597396 LCE3BQ5TA77 95 aa7.3□□□□□ -1.24
SHKBP1-214ENST00000597396 LCE3AQ5TA76 89 aa7.29□□□□□ -1.24
SHKBP1-214ENST00000597396 MT1EP04732 61 aa7.28□□□□□ -1.24
SHKBP1-214ENST00000597396 KRTAP19-5Q3LI72 72 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms