RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 HSPG2P98160 4391 aa8.55□□□□□ -1.04
LIG1-206ENST00000594067 KRTAP10-8P60410 259 aa8.54□□□□□ -1.04
LIG1-206ENST00000594067 K7ERS5 55 aa8.52□□□□□ -1.05
LIG1-206ENST00000594067 CRIPTQ9P021 101 aa8.5□□□□□ -1.05
LIG1-206ENST00000594067 Q5VSD8 79 aa8.5□□□□□ -1.05
LIG1-206ENST00000594067 RPL37P61927 97 aaKnown RBP8.49□□□□□ -1.05
LIG1-206ENST00000594067 MYCBP2O75592 4640 aa8.48□□□□□ -1.05
LIG1-206ENST00000594067 ROMO1P60602 79 aa8.48□□□□□ -1.05
LIG1-206ENST00000594067 KRTAP3-3Q9BYR6 98 aa8.47□□□□□ -1.05
LIG1-206ENST00000594067 XP32Q5T750 250 aa8.46□□□□□ -1.06
LIG1-206ENST00000594067 KRTAP10-6P60371 365 aaPredicted RBP8.46□□□□□ -1.06
LIG1-206ENST00000594067 DMBT1Q9UGM3 2413 aaPredicted RBP8.46□□□□□ -1.06
LIG1-206ENST00000594067 KRTAP13-4Q3LI77 160 aa8.41□□□□□ -1.06
LIG1-206ENST00000594067 S4R3F8 94 aa8.38□□□□□ -1.07
LIG1-206ENST00000594067 KRTAP3-2Q9BYR7 98 aa8.37□□□□□ -1.07
LIG1-206ENST00000594067 KRTAP17-1Q9BYP8 105 aa8.36□□□□□ -1.07
LIG1-206ENST00000594067 RYR1P21817 5038 aa8.35□□□□□ -1.07
LIG1-206ENST00000594067 A0A0D9SG42 100 aa8.34□□□□□ -1.07
LIG1-206ENST00000594067 RYR3Q15413 4870 aa8.3□□□□□ -1.08
LIG1-206ENST00000594067 P0C880 135 aa8.27□□□□□ -1.08
LIG1-206ENST00000594067 MT1HL1P0DM35 61 aa8.26□□□□□ -1.09
LIG1-206ENST00000594067 TPRXLQ17RH7 258 aa8.26□□□□□ -1.09
LIG1-206ENST00000594067 LPAP08519 4548 aa8.24□□□□□ -1.09
LIG1-206ENST00000594067 KIAA1109Q2LD37 5005 aa8.22□□□□□ -1.09
LIG1-206ENST00000594067 C10orf95Q9H7T3 257 aa8.16□□□□□ -1.1
LIG1-206ENST00000594067 LRP2P98164 4655 aa8.16□□□□□ -1.1
LIG1-206ENST00000594067 KRTAP12-2P59991 146 aa8.15□□□□□ -1.11
LIG1-206ENST00000594067 SPINT4Q6UDR6 99 aa8.1□□□□□ -1.11
LIG1-206ENST00000594067 KRTAP12-1P59990 96 aa8.07□□□□□ -1.12
LIG1-206ENST00000594067 EPPK1P58107 5090 aaKnown RBP7.99□□□□□ -1.13
LIG1-206ENST00000594067 KRTAP15-1Q3LI76 137 aa7.98□□□□□ -1.13
LIG1-206ENST00000594067 ABCA13Q86UQ4 5058 aa7.96□□□□□ -1.14
LIG1-206ENST00000594067 M0QZ58 72 aa7.95□□□□□ -1.14
LIG1-206ENST00000594067 KRTAP4-5Q9BYR2 181 aa7.91□□□□□ -1.14
LIG1-206ENST00000594067 A0A0A0MQY5 61 aa7.9□□□□□ -1.15
LIG1-206ENST00000594067 NDUFAF8A1L188 74 aa7.85□□□□□ -1.15
LIG1-206ENST00000594067 MUC17Q685J3 4493 aa7.81□□□□□ -1.16
LIG1-206ENST00000594067 R4GN34 69 aa7.79□□□□□ -1.16
LIG1-206ENST00000594067 SEC61BP60468 96 aaKnown RBP7.78□□□□□ -1.16
LIG1-206ENST00000594067 KRTAP4-1Q9BYQ7 146 aa7.75□□□□□ -1.17
LIG1-206ENST00000594067 LORP23490 312 aaPredicted RBP7.74□□□□□ -1.17
LIG1-206ENST00000594067 J3QL48 77 aa7.65□□□□□ -1.19
LIG1-206ENST00000594067 KRTAP19-2Q3LHN2 52 aa7.58□□□□□ -1.2
LIG1-206ENST00000594067 HERC2O95714 4834 aa7.58□□□□□ -1.2
LIG1-206ENST00000594067 PLAC4Q8WY50 150 aa7.51□□□□□ -1.21
LIG1-206ENST00000594067 MUC2Q02817 5179 aa7.46□□□□□ -1.22
LIG1-206ENST00000594067 CAMK2N1Q7Z7J9 78 aa7.41□□□□□ -1.22
LIG1-206ENST00000594067 FLGP20930 4061 aaPredicted RBP7.38□□□□□ -1.23
LIG1-206ENST00000594067 BIRC6Q9NR09 4857 aa7.37□□□□□ -1.23
LIG1-206ENST00000594067 PP632Q6XCG6 107 aa7.34□□□□□ -1.23
LIG1-206ENST00000594067 HERC1Q15751 4861 aa7.24□□□□□ -1.25
LIG1-206ENST00000594067 PCLOQ9Y6V0 5065 aa7.22□□□□□ -1.25
LIG1-206ENST00000594067 LUZP6Q538Z0 58 aa7.18□□□□□ -1.26
LIG1-206ENST00000594067 HMCN2Q8NDA2 5059 aa7.16□□□□□ -1.26
LIG1-206ENST00000594067 TNP1P09430 55 aa7.12□□□□□ -1.27
LIG1-206ENST00000594067 FAT4Q6V0I7 4981 aa7.11□□□□□ -1.27
LIG1-206ENST00000594067 LCE2CQ5TA81 110 aa7.11□□□□□ -1.27
LIG1-206ENST00000594067 KRTAP23-1A1A580 65 aa7.05□□□□□ -1.28
LIG1-206ENST00000594067 SPRR2GQ9BYE4 73 aa6.99□□□□□ -1.29
LIG1-206ENST00000594067 SPRR5A0A1B0GTR4 108 aa6.98□□□□□ -1.29
LIG1-206ENST00000594067 M0R2T5 61 aa6.98□□□□□ -1.29
LIG1-206ENST00000594067 KRTAP19-1Q8IUB9 90 aa6.98□□□□□ -1.29
LIG1-206ENST00000594067 MT1HP80294 61 aa6.91□□□□□ -1.3
LIG1-206ENST00000594067 RNF213Q63HN8 5207 aa6.87□□□□□ -1.31
LIG1-206ENST00000594067 MT1FP04733 61 aa6.84□□□□□ -1.31
LIG1-206ENST00000594067 KRTAP10-10P60014 251 aa6.84□□□□□ -1.31
LIG1-206ENST00000594067 MT2AP02795 61 aa6.83□□□□□ -1.32
LIG1-206ENST00000594067 UBR4Q5T4S7 5183 aa6.82□□□□□ -1.32
LIG1-206ENST00000594067 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
LIG1-206ENST00000594067 KRTAP9-8Q9BYQ0 159 aa6.76□□□□□ -1.33
LIG1-206ENST00000594067 KRTAP19-8Q3LI54 63 aa6.66□□□□□ -1.34
LIG1-206ENST00000594067 MT1BP07438 61 aa6.62□□□□□ -1.35
LIG1-206ENST00000594067 KRTAP10-5P60370 271 aa6.59□□□□□ -1.35
LIG1-206ENST00000594067 MT1XP80297 61 aa6.58□□□□□ -1.36
LIG1-206ENST00000594067 KRTAP8-1Q8IUC2 63 aa6.55□□□□□ -1.36
LIG1-206ENST00000594067 KRTAP9-3Q9BYQ3 159 aa6.47□□□□□ -1.37
LIG1-206ENST00000594067 KRTAP10-12P60413 245 aa6.46□□□□□ -1.37
LIG1-206ENST00000594067 KRTAP10-7P60409 375 aaPredicted RBP6.43□□□□□ -1.38
LIG1-206ENST00000594067 KRTAP12-3P60328 96 aa6.42□□□□□ -1.38
LIG1-206ENST00000594067 PRO2289Q9P1D8 64 aa6.35□□□□□ -1.39
LIG1-206ENST00000594067 INE1O15225 51 aa6.28□□□□□ -1.4
LIG1-206ENST00000594067 LCE2BO14633 110 aa6.22□□□□□ -1.41
LIG1-206ENST00000594067 KRTAP19-5Q3LI72 72 aa6.16□□□□□ -1.42
LIG1-206ENST00000594067 USH2AO75445 5202 aa6.15□□□□□ -1.42
LIG1-206ENST00000594067 KMT2DO14686 5537 aa6.1□□□□□ -1.43
LIG1-206ENST00000594067 KRTAP4-8A0A0G2JLE6 195 aa6.04□□□□□ -1.44
LIG1-206ENST00000594067 KRTAP4-8Q9BYQ9 185 aa6.04□□□□□ -1.44
LIG1-206ENST00000594067 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
LIG1-206ENST00000594067 LCE2AQ5TA79 106 aaPredicted RBP6.02□□□□□ -1.44
LIG1-206ENST00000594067 KRTAP9-6A8MVA2 160 aa5.87□□□□□ -1.47
LIG1-206ENST00000594067 KRTAP19-7Q3SYF9 63 aa5.86□□□□□ -1.47
LIG1-206ENST00000594067 KRTAP4-7Q9BYR0 210 aa5.81□□□□□ -1.48
LIG1-206ENST00000594067 KRTAP2-3P0C7H8 128 aa5.72□□□□□ -1.49
LIG1-206ENST00000594067 KRTAP2-4Q9BYR9 128 aa5.72□□□□□ -1.49
LIG1-206ENST00000594067 KRTAP2-1Q9BYU5 128 aa5.72□□□□□ -1.49
LIG1-206ENST00000594067 MT1LQ93083 61 aa5.69□□□□□ -1.5
LIG1-206ENST00000594067 SSPOA2VEC9 5147 aa5.69□□□□□ -1.5
LIG1-206ENST00000594067 MT1EP04732 61 aa5.69□□□□□ -1.5
LIG1-206ENST00000594067 KRTAP19-4Q3LI73 84 aa5.59□□□□□ -1.52
LIG1-206ENST00000594067 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms