RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 COX6B2Q6YFQ2 88 aa4.85□□□□□ -1.63
VPS25-205ENST00000590339 CHKB-CPT1BH3BT56 60 aa4.83□□□□□ -1.64
VPS25-205ENST00000590339 LINC01558Q9Y6Z2 57 aa4.83□□□□□ -1.64
VPS25-205ENST00000590339 KRTAP9-2Q9BYQ4 174 aa4.81□□□□□ -1.64
VPS25-205ENST00000590339 Q5VV11 94 aa4.78□□□□□ -1.64
VPS25-205ENST00000590339 PSPHP1O15172 72 aa4.77□□□□□ -1.65
VPS25-205ENST00000590339 PRR15LQ9BU68 103 aa4.77□□□□□ -1.65
VPS25-205ENST00000590339 LCE2CQ5TA81 110 aa4.75□□□□□ -1.65
VPS25-205ENST00000590339 KRTAP19-2Q3LHN2 52 aa4.73□□□□□ -1.65
VPS25-205ENST00000590339 SPTSSBQ8NFR3 76 aa4.73□□□□□ -1.65
VPS25-205ENST00000590339 MT1HP80294 61 aa4.7□□□□□ -1.66
VPS25-205ENST00000590339 LCE2DQ5TA82 110 aaPredicted RBP4.7□□□□□ -1.66
VPS25-205ENST00000590339 KRTAP3-3Q9BYR6 98 aa4.7□□□□□ -1.66
VPS25-205ENST00000590339 H1FX-AS1Q4G0G2 97 aa4.69□□□□□ -1.66
VPS25-205ENST00000590339 A0A1B0GU69 56 aa4.68□□□□□ -1.66
VPS25-205ENST00000590339 LCA10Q71F78 164 aa4.68□□□□□ -1.66
VPS25-205ENST00000590339 RBM12B-AS1Q9P1G2 102 aa4.68□□□□□ -1.66
VPS25-205ENST00000590339 S4R3F8 94 aa4.68□□□□□ -1.66
VPS25-205ENST00000590339 M0R2T5 61 aa4.67□□□□□ -1.66
VPS25-205ENST00000590339 KRTAP9-6A0A140TA67 174 aa4.65□□□□□ -1.67
VPS25-205ENST00000590339 FSIP2Q5CZC0 6907 aa4.65□□□□□ -1.67
VPS25-205ENST00000590339 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
VPS25-205ENST00000590339 A6NED7 52 aa4.62□□□□□ -1.67
VPS25-205ENST00000590339 PRO0628Q9UI54 55 aa4.62□□□□□ -1.67
VPS25-205ENST00000590339 KRTAP10-6P60371 365 aaPredicted RBP4.61□□□□□ -1.67
VPS25-205ENST00000590339 CDC42SE1Q9NRR8 79 aa4.6□□□□□ -1.67
VPS25-205ENST00000590339 LORP23490 312 aaPredicted RBP4.59□□□□□ -1.67
VPS25-205ENST00000590339 SEC61GP60059 68 aa4.59□□□□□ -1.67
VPS25-205ENST00000590339 A8MU10 97 aa4.58□□□□□ -1.68
VPS25-205ENST00000590339 UQCR11O14957 56 aa4.56□□□□□ -1.68
VPS25-205ENST00000590339 KRTAP3-2Q9BYR7 98 aa4.56□□□□□ -1.68
VPS25-205ENST00000590339 SPATA8Q6RVD6 105 aa4.55□□□□□ -1.68
VPS25-205ENST00000590339 CRCT1Q9UGL9 99 aa4.55□□□□□ -1.68
VPS25-205ENST00000590339 CSAG1Q6PB30 78 aa4.53□□□□□ -1.68
VPS25-205ENST00000590339 H0YAA0 97 aa4.52□□□□□ -1.69
VPS25-205ENST00000590339 MIR22HGQ0VDD5 57 aa4.52□□□□□ -1.69
VPS25-205ENST00000590339 FLGP20930 4061 aaPredicted RBP4.52□□□□□ -1.69
VPS25-205ENST00000590339 A0A1B0GU33 70 aa4.51□□□□□ -1.69
VPS25-205ENST00000590339 P0C880 135 aa4.48□□□□□ -1.69
VPS25-205ENST00000590339 SVIPQ8NHG7 77 aa4.47□□□□□ -1.69
VPS25-205ENST00000590339 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.7
VPS25-205ENST00000590339 KRTAP13-4Q3LI77 160 aa4.44□□□□□ -1.7
VPS25-205ENST00000590339 KRTAP9-8Q9BYQ0 159 aa4.44□□□□□ -1.7
VPS25-205ENST00000590339 A6NN06 94 aa4.41□□□□□ -1.7
VPS25-205ENST00000590339 MT2AP02795 61 aa4.38□□□□□ -1.71
VPS25-205ENST00000590339 PMAIP1Q13794 54 aa4.37□□□□□ -1.71
VPS25-205ENST00000590339 M0QZ58 72 aa4.36□□□□□ -1.71
VPS25-205ENST00000590339 KRTAP10-10P60014 251 aa4.36□□□□□ -1.71
VPS25-205ENST00000590339 MT1FP04733 61 aa4.35□□□□□ -1.71
VPS25-205ENST00000590339 USH2AO75445 5202 aa4.35□□□□□ -1.71
VPS25-205ENST00000590339 SSPOA2VEC9 5147 aa4.3□□□□□ -1.72
VPS25-205ENST00000590339 LCE2BO14633 110 aa4.3□□□□□ -1.72
VPS25-205ENST00000590339 KRTAP9-3Q9BYQ3 159 aa4.3□□□□□ -1.72
VPS25-205ENST00000590339 A0A0D9SG42 100 aa4.29□□□□□ -1.72
VPS25-205ENST00000590339 R4GN34 69 aa4.28□□□□□ -1.72
VPS25-205ENST00000590339 KRTAP12-1P59990 96 aa4.27□□□□□ -1.73
VPS25-205ENST00000590339 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
VPS25-205ENST00000590339 K7ERS5 55 aa4.26□□□□□ -1.73
VPS25-205ENST00000590339 CRIPTQ9P021 101 aa4.26□□□□□ -1.73
VPS25-205ENST00000590339 KRTAP12-2P59991 146 aa4.25□□□□□ -1.73
VPS25-205ENST00000590339 KRTAP19-1Q8IUB9 90 aa4.24□□□□□ -1.73
VPS25-205ENST00000590339 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.23□□□□□ -1.73
VPS25-205ENST00000590339 FCGBPQ9Y6R7 5405 aaPredicted RBP4.21□□□□□ -1.74
VPS25-205ENST00000590339 KRTAP9-7A8MTY7 169 aa4.19□□□□□ -1.74
VPS25-205ENST00000590339 LINC01554Q52M75 96 aa4.18□□□□□ -1.74
VPS25-205ENST00000590339 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
VPS25-205ENST00000590339 SPRR2GQ9BYE4 73 aa4.17□□□□□ -1.74
VPS25-205ENST00000590339 ROMO1P60602 79 aa4.15□□□□□ -1.75
VPS25-205ENST00000590339 MACF1Q9UPN3 7388 aaKnown RBP4.15□□□□□ -1.75
VPS25-205ENST00000590339 SYNE2Q8WXH0 6885 aaKnown RBP4.14□□□□□ -1.75
VPS25-205ENST00000590339 PRAC1Q96KF2 57 aa4.12□□□□□ -1.75
VPS25-205ENST00000590339 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
VPS25-205ENST00000590339 KRTAP19-8Q3LI54 63 aa4.07□□□□□ -1.76
VPS25-205ENST00000590339 C10orf95Q9H7T3 257 aa4.03□□□□□ -1.76
VPS25-205ENST00000590339 KRTAP25-1Q3LHN0 102 aa4.02□□□□□ -1.77
VPS25-205ENST00000590339 CAMK2N1Q7Z7J9 78 aa4.01□□□□□ -1.77
VPS25-205ENST00000590339 MT1BP07438 61 aa4□□□□□ -1.77
VPS25-205ENST00000590339 PLAC4Q8WY50 150 aa3.98□□□□□ -1.77
VPS25-205ENST00000590339 KRTAP6-3Q3LI67 103 aa3.94□□□□□ -1.78
VPS25-205ENST00000590339 KRTAP10-5P60370 271 aa3.88□□□□□ -1.79
VPS25-205ENST00000590339 MT1XP80297 61 aa3.88□□□□□ -1.79
VPS25-205ENST00000590339 NEBP20929 6669 aa3.86□□□□□ -1.79
VPS25-205ENST00000590339 TNP1P09430 55 aa3.85□□□□□ -1.79
VPS25-205ENST00000590339 KRTAP23-1A1A580 65 aa3.82□□□□□ -1.8
VPS25-205ENST00000590339 PP632Q6XCG6 107 aa3.81□□□□□ -1.8
VPS25-205ENST00000590339 MUC12Q9UKN1 5478 aa3.8□□□□□ -1.8
VPS25-205ENST00000590339 PRO2289Q9P1D8 64 aa3.77□□□□□ -1.81
VPS25-205ENST00000590339 KMT2DO14686 5537 aa3.71□□□□□ -1.82
VPS25-205ENST00000590339 KRTAP5-9P26371 169 aa3.71□□□□□ -1.82
VPS25-205ENST00000590339 KRTAP10-7P60409 375 aaPredicted RBP3.71□□□□□ -1.82
VPS25-205ENST00000590339 LCE3AQ5TA76 89 aa3.71□□□□□ -1.82
VPS25-205ENST00000590339 KRTAP10-12P60413 245 aa3.69□□□□□ -1.82
VPS25-205ENST00000590339 MDN1Q9NU22 5596 aa3.69□□□□□ -1.82
VPS25-205ENST00000590339 KRTAP20-1Q3LI63 56 aa3.67□□□□□ -1.82
VPS25-205ENST00000590339 KRTAP8-1Q8IUC2 63 aa3.66□□□□□ -1.82
VPS25-205ENST00000590339 SPRR2FQ96RM1 72 aa3.66□□□□□ -1.82
VPS25-205ENST00000590339 LOC100996750A0A140TA64 210 aa3.65□□□□□ -1.83
VPS25-205ENST00000590339 KRTAP4-6Q9BYQ5 205 aa3.65□□□□□ -1.83
VPS25-205ENST00000590339 KRTAP4-8A0A0G2JLE6 195 aa3.62□□□□□ -1.83
VPS25-205ENST00000590339 SPRR2EP22531 72 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms