RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594		P0C880	135 aa		4.96	□□□□□ -1.61
PPP4R1-222	ENST00000582594	APOB	P04114	4563 aa	Known RBP	4.96	□□□□□ -1.62
PPP4R1-222	ENST00000582594	KRTAP10-6	P60371	365 aa	Predicted RBP	4.95	□□□□□ -1.62
PPP4R1-222	ENST00000582594	RPL37	P61927	97 aa	Known RBP	4.95	□□□□□ -1.62
PPP4R1-222	ENST00000582594	KRTAP3-3	Q9BYR6	98 aa		4.93	□□□□□ -1.62
PPP4R1-222	ENST00000582594	TPRXL	Q17RH7	258 aa		4.93	□□□□□ -1.62
PPP4R1-222	ENST00000582594	C10orf95	Q9H7T3	257 aa		4.93	□□□□□ -1.62
PPP4R1-222	ENST00000582594	KRTAP10-4	P60372	401 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-222	ENST00000582594	SPINT4	Q6UDR6	99 aa		4.91	□□□□□ -1.62
PPP4R1-222	ENST00000582594	KRTAP3-2	Q9BYR7	98 aa		4.9	□□□□□ -1.62
PPP4R1-222	ENST00000582594		A0A1B0GVY2	172 aa		4.89	□□□□□ -1.63
PPP4R1-222	ENST00000582594	KRTAP10-8	P60410	259 aa		4.89	□□□□□ -1.63
PPP4R1-222	ENST00000582594	HSPG2	P98160	4391 aa		4.87	□□□□□ -1.63
PPP4R1-222	ENST00000582594	RYR3	Q15413	4870 aa		4.87	□□□□□ -1.63
PPP4R1-222	ENST00000582594		S4R3F8	94 aa		4.87	□□□□□ -1.63
PPP4R1-222	ENST00000582594	FAT3	Q8TDW7	4589 aa		4.87	□□□□□ -1.63
PPP4R1-222	ENST00000582594	LRP1	Q07954	4544 aa	Known RBP	4.85	□□□□□ -1.63
PPP4R1-222	ENST00000582594	HERC2	O95714	4834 aa		4.83	□□□□□ -1.64
PPP4R1-222	ENST00000582594	MYCBP2	O75592	4640 aa		4.83	□□□□□ -1.64
PPP4R1-222	ENST00000582594	KRTAP12-2	P59991	146 aa		4.83	□□□□□ -1.64
PPP4R1-222	ENST00000582594	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.82	□□□□□ -1.64
PPP4R1-222	ENST00000582594	TNXB	P22105	4242 aa		4.8	□□□□□ -1.64
PPP4R1-222	ENST00000582594	XP32	Q5T750	250 aa		4.79	□□□□□ -1.64
PPP4R1-222	ENST00000582594	NDUFAF8	A1L188	74 aa		4.77	□□□□□ -1.65
PPP4R1-222	ENST00000582594	KRTAP12-1	P59990	96 aa		4.75	□□□□□ -1.65
PPP4R1-222	ENST00000582594	KRTAP15-1	Q3LI76	137 aa		4.75	□□□□□ -1.65
PPP4R1-222	ENST00000582594	LPA	P08519	4548 aa		4.71	□□□□□ -1.66
PPP4R1-222	ENST00000582594		A0A0A0MQY5	61 aa		4.68	□□□□□ -1.66
PPP4R1-222	ENST00000582594		Q5VSD8	79 aa		4.68	□□□□□ -1.66
PPP4R1-222	ENST00000582594		J3QL48	77 aa		4.63	□□□□□ -1.67
PPP4R1-222	ENST00000582594	EPPK1	P58107	5090 aa	Known RBP	4.63	□□□□□ -1.67
PPP4R1-222	ENST00000582594	LRP2	P98164	4655 aa		4.62	□□□□□ -1.67
PPP4R1-222	ENST00000582594		M0QZ58	72 aa		4.62	□□□□□ -1.67
PPP4R1-222	ENST00000582594	KRTAP17-1	Q9BYP8	105 aa		4.61	□□□□□ -1.67
PPP4R1-222	ENST00000582594	RYR1	P21817	5038 aa		4.61	□□□□□ -1.67
PPP4R1-222	ENST00000582594	MT1HL1	P0DM35	61 aa		4.56	□□□□□ -1.68
PPP4R1-222	ENST00000582594		R4GN34	69 aa		4.55	□□□□□ -1.68
PPP4R1-222	ENST00000582594	LOR	P23490	312 aa	Predicted RBP	4.51	□□□□□ -1.69
PPP4R1-222	ENST00000582594	PCLO	Q9Y6V0	5065 aa		4.49	□□□□□ -1.69
PPP4R1-222	ENST00000582594	KIAA1109	Q2LD37	5005 aa		4.49	□□□□□ -1.69
PPP4R1-222	ENST00000582594	PLAC4	Q8WY50	150 aa		4.47	□□□□□ -1.69
PPP4R1-222	ENST00000582594	ABCA13	Q86UQ4	5058 aa		4.42	□□□□□ -1.7
PPP4R1-222	ENST00000582594	LUZP6	Q538Z0	58 aa		4.38	□□□□□ -1.71
PPP4R1-222	ENST00000582594	MUC17	Q685J3	4493 aa		4.37	□□□□□ -1.71
PPP4R1-222	ENST00000582594	CAMK2N1	Q7Z7J9	78 aa		4.36	□□□□□ -1.71
PPP4R1-222	ENST00000582594	KRTAP4-1	Q9BYQ7	146 aa		4.35	□□□□□ -1.71
PPP4R1-222	ENST00000582594	SEC61B	P60468	96 aa	Known RBP	4.32	□□□□□ -1.72
PPP4R1-222	ENST00000582594	KRTAP4-5	Q9BYR2	181 aa		4.32	□□□□□ -1.72
PPP4R1-222	ENST00000582594	PP632	Q6XCG6	107 aa		4.27	□□□□□ -1.73
PPP4R1-222	ENST00000582594	KRTAP19-2	Q3LHN2	52 aa		4.22	□□□□□ -1.73
PPP4R1-222	ENST00000582594	MUC2	Q02817	5179 aa		4.2	□□□□□ -1.74
PPP4R1-222	ENST00000582594	HMCN2	Q8NDA2	5059 aa		4.17	□□□□□ -1.74
PPP4R1-222	ENST00000582594	TNP1	P09430	55 aa		4.17	□□□□□ -1.74
PPP4R1-222	ENST00000582594	FLG	P20930	4061 aa	Predicted RBP	4.13	□□□□□ -1.75
PPP4R1-222	ENST00000582594	HERC1	Q15751	4861 aa		4.08	□□□□□ -1.76
PPP4R1-222	ENST00000582594	SPRR5	A0A1B0GTR4	108 aa		4.05	□□□□□ -1.76
PPP4R1-222	ENST00000582594	KRTAP23-1	A1A580	65 aa		4.02	□□□□□ -1.77
PPP4R1-222	ENST00000582594	LCE3A	Q5TA76	89 aa		3.98	□□□□□ -1.77
PPP4R1-222	ENST00000582594	FAT4	Q6V0I7	4981 aa		3.98	□□□□□ -1.77
PPP4R1-222	ENST00000582594	LCE2A	Q5TA79	106 aa	Predicted RBP	3.96	□□□□□ -1.78
PPP4R1-222	ENST00000582594	LCE2D	Q5TA82	110 aa	Predicted RBP	3.96	□□□□□ -1.78
PPP4R1-222	ENST00000582594	KRTAP19-1	Q8IUB9	90 aa		3.94	□□□□□ -1.78
PPP4R1-222	ENST00000582594		M0R2T5	61 aa		3.92	□□□□□ -1.78
PPP4R1-222	ENST00000582594	SPRR2G	Q9BYE4	73 aa		3.92	□□□□□ -1.78
PPP4R1-222	ENST00000582594	LCE2C	Q5TA81	110 aa		3.91	□□□□□ -1.78
PPP4R1-222	ENST00000582594	KRTAP10-10	P60014	251 aa		3.84	□□□□□ -1.79
PPP4R1-222	ENST00000582594	MT1F	P04733	61 aa		3.82	□□□□□ -1.8
PPP4R1-222	ENST00000582594	MT1H	P80294	61 aa		3.8	□□□□□ -1.8
PPP4R1-222	ENST00000582594	UBR4	Q5T4S7	5183 aa		3.8	□□□□□ -1.8
PPP4R1-222	ENST00000582594	MT2A	P02795	61 aa		3.8	□□□□□ -1.8
PPP4R1-222	ENST00000582594	KRTAP8-1	Q8IUC2	63 aa		3.79	□□□□□ -1.8
PPP4R1-222	ENST00000582594	RNF213	Q63HN8	5207 aa		3.78	□□□□□ -1.8
PPP4R1-222	ENST00000582594	PRO2289	Q9P1D8	64 aa		3.78	□□□□□ -1.8
PPP4R1-222	ENST00000582594	KRTAP10-5	P60370	271 aa		3.75	□□□□□ -1.81
PPP4R1-222	ENST00000582594	KRTAP12-3	P60328	96 aa		3.74	□□□□□ -1.81
PPP4R1-222	ENST00000582594	MT1X	P80297	61 aa		3.73	□□□□□ -1.81
PPP4R1-222	ENST00000582594	KRTAP9-8	Q9BYQ0	159 aa		3.73	□□□□□ -1.81
PPP4R1-222	ENST00000582594	KRTAP10-12	P60413	245 aa		3.72	□□□□□ -1.81
PPP4R1-222	ENST00000582594	MT1B	P07438	61 aa		3.71	□□□□□ -1.82
PPP4R1-222	ENST00000582594	KRTAP19-8	Q3LI54	63 aa		3.71	□□□□□ -1.82
PPP4R1-222	ENST00000582594	INE1	O15225	51 aa		3.7	□□□□□ -1.82
PPP4R1-222	ENST00000582594	KRTAP9-2	Q9BYQ4	174 aa		3.69	□□□□□ -1.82
PPP4R1-222	ENST00000582594	KRTAP10-7	P60409	375 aa	Predicted RBP	3.69	□□□□□ -1.82
PPP4R1-222	ENST00000582594	KRTAP9-6	A0A140TA67	174 aa		3.67	□□□□□ -1.82
PPP4R1-222	ENST00000582594	KRTAP19-5	Q3LI72	72 aa		3.56	□□□□□ -1.84
PPP4R1-222	ENST00000582594	KRTAP9-3	Q9BYQ3	159 aa		3.55	□□□□□ -1.84
PPP4R1-222	ENST00000582594	KMT2D	O14686	5537 aa		3.55	□□□□□ -1.84
PPP4R1-222	ENST00000582594	LCE3C	Q5T5A8	94 aa		3.52	□□□□□ -1.85
PPP4R1-222	ENST00000582594	CRCT1	Q9UGL9	99 aa		3.52	□□□□□ -1.85
PPP4R1-222	ENST00000582594	USH2A	O75445	5202 aa		3.47	□□□□□ -1.85
PPP4R1-222	ENST00000582594	KRTAP4-8	A0A0G2JLE6	195 aa		3.46	□□□□□ -1.86
PPP4R1-222	ENST00000582594	KRTAP9-6	A8MVA2	160 aa		3.46	□□□□□ -1.86
PPP4R1-222	ENST00000582594	KRTAP4-8	Q9BYQ9	185 aa		3.46	□□□□□ -1.86
PPP4R1-222	ENST00000582594	LCE2B	O14633	110 aa		3.43	□□□□□ -1.86
PPP4R1-222	ENST00000582594	KRTAP4-7	Q9BYR0	210 aa		3.42	□□□□□ -1.86
PPP4R1-222	ENST00000582594	KRTAP19-6	Q3LI70	58 aa		3.39	□□□□□ -1.87
PPP4R1-222	ENST00000582594	KRTAP2-3	P0C7H8	128 aa		3.32	□□□□□ -1.88
PPP4R1-222	ENST00000582594	KRTAP19-7	Q3SYF9	63 aa		3.32	□□□□□ -1.88
PPP4R1-222	ENST00000582594	KRTAP2-4	Q9BYR9	128 aa		3.32	□□□□□ -1.88
PPP4R1-222	ENST00000582594	KRTAP2-1	Q9BYU5	128 aa		3.32	□□□□□ -1.88

Retrieved 100 of 20,778 RNA–protein pairs in 89 ms