RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 C9orf92A6NGG3 77 aa7.02□□□□□ -1.29
CDK5RAP3-217ENST00000580287 PCLOQ9Y6V0 5065 aa7.01□□□□□ -1.29
CDK5RAP3-217ENST00000580287 IGKV2D-30A0A075B6S6 120 aa6.97□□□□□ -1.29
CDK5RAP3-217ENST00000580287 IGKV2-30P06310 120 aa6.97□□□□□ -1.29
CDK5RAP3-217ENST00000580287 ACYP2P14621 99 aa6.96□□□□□ -1.3
CDK5RAP3-217ENST00000580287 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
CDK5RAP3-217ENST00000580287 KRTAP3-2Q9BYR7 98 aa6.96□□□□□ -1.3
CDK5RAP3-217ENST00000580287 DMAC1Q96GE9 116 aa6.93□□□□□ -1.3
CDK5RAP3-217ENST00000580287 LPAP08519 4548 aa6.92□□□□□ -1.3
CDK5RAP3-217ENST00000580287 HERC1Q15751 4861 aa6.9□□□□□ -1.31
CDK5RAP3-217ENST00000580287 A0A1B0GU69 56 aa6.87□□□□□ -1.31
CDK5RAP3-217ENST00000580287 SPATA8Q6RVD6 105 aa6.84□□□□□ -1.31
CDK5RAP3-217ENST00000580287 LRP2P98164 4655 aa6.83□□□□□ -1.32
CDK5RAP3-217ENST00000580287 LUZP6Q538Z0 58 aa6.83□□□□□ -1.32
CDK5RAP3-217ENST00000580287 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
CDK5RAP3-217ENST00000580287 XP32Q5T750 250 aa6.79□□□□□ -1.32
CDK5RAP3-217ENST00000580287 C20orf166-AS1Q96NR2 134 aa6.79□□□□□ -1.32
CDK5RAP3-217ENST00000580287 A8MUU9 505 aa6.78□□□□□ -1.32
CDK5RAP3-217ENST00000580287 UQCR11O14957 56 aa6.77□□□□□ -1.33
CDK5RAP3-217ENST00000580287 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
CDK5RAP3-217ENST00000580287 TPRXLQ17RH7 258 aa6.72□□□□□ -1.33
CDK5RAP3-217ENST00000580287 ROMO1P60602 79 aa6.7□□□□□ -1.34
CDK5RAP3-217ENST00000580287 RPL37P61927 97 aaKnown RBP6.69□□□□□ -1.34
CDK5RAP3-217ENST00000580287 LCE2DQ5TA82 110 aaPredicted RBP6.68□□□□□ -1.34
CDK5RAP3-217ENST00000580287 HMCN2Q8NDA2 5059 aa6.66□□□□□ -1.34
CDK5RAP3-217ENST00000580287 CSAG1Q6PB30 78 aa6.66□□□□□ -1.34
CDK5RAP3-217ENST00000580287 MUC2Q02817 5179 aa6.63□□□□□ -1.35
CDK5RAP3-217ENST00000580287 KRTAP3-1Q9BYR8 98 aa6.61□□□□□ -1.35
CDK5RAP3-217ENST00000580287 P0C880 135 aa6.58□□□□□ -1.36
CDK5RAP3-217ENST00000580287 K7ERS5 55 aa6.54□□□□□ -1.36
CDK5RAP3-217ENST00000580287 H0YAA0 97 aa6.53□□□□□ -1.36
CDK5RAP3-217ENST00000580287 COX6B2Q6YFQ2 88 aa6.52□□□□□ -1.37
CDK5RAP3-217ENST00000580287 KRTAP4-1Q9BYQ7 146 aa6.51□□□□□ -1.37
CDK5RAP3-217ENST00000580287 UBR4Q5T4S7 5183 aa6.51□□□□□ -1.37
CDK5RAP3-217ENST00000580287 RNF213Q63HN8 5207 aa6.46□□□□□ -1.38
CDK5RAP3-217ENST00000580287 MUC17Q685J3 4493 aa6.45□□□□□ -1.38
CDK5RAP3-217ENST00000580287 KRTAP25-1Q3LHN0 102 aa6.44□□□□□ -1.38
CDK5RAP3-217ENST00000580287 A0A1B0GU33 70 aa6.43□□□□□ -1.38
CDK5RAP3-217ENST00000580287 NDUFAF8A1L188 74 aa6.43□□□□□ -1.38
CDK5RAP3-217ENST00000580287 H1FX-AS1Q4G0G2 97 aa6.42□□□□□ -1.38
CDK5RAP3-217ENST00000580287 LCE2CQ5TA81 110 aa6.4□□□□□ -1.38
CDK5RAP3-217ENST00000580287 LCE2AQ5TA79 106 aaPredicted RBP6.37□□□□□ -1.39
CDK5RAP3-217ENST00000580287 S4R3F8 94 aa6.34□□□□□ -1.39
CDK5RAP3-217ENST00000580287 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
CDK5RAP3-217ENST00000580287 FAT4Q6V0I7 4981 aa6.32□□□□□ -1.4
CDK5RAP3-217ENST00000580287 CRIPTQ9P021 101 aa6.31□□□□□ -1.4
CDK5RAP3-217ENST00000580287 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
CDK5RAP3-217ENST00000580287 KRTAP13-4Q3LI77 160 aa6.24□□□□□ -1.41
CDK5RAP3-217ENST00000580287 A0A0D9SG42 100 aa6.23□□□□□ -1.41
CDK5RAP3-217ENST00000580287 KRTAP10-6P60371 365 aaPredicted RBP6.23□□□□□ -1.41
CDK5RAP3-217ENST00000580287 LCE2BO14633 110 aa6.15□□□□□ -1.42
CDK5RAP3-217ENST00000580287 FLGP20930 4061 aaPredicted RBP6.11□□□□□ -1.43
CDK5RAP3-217ENST00000580287 SPINT4Q6UDR6 99 aa6.04□□□□□ -1.44
CDK5RAP3-217ENST00000580287 C10orf95Q9H7T3 257 aa6.04□□□□□ -1.44
CDK5RAP3-217ENST00000580287 MT1HP80294 61 aa6.01□□□□□ -1.45
CDK5RAP3-217ENST00000580287 KRTAP12-2P59991 146 aa6□□□□□ -1.45
CDK5RAP3-217ENST00000580287 M0R2T5 61 aa5.99□□□□□ -1.45
CDK5RAP3-217ENST00000580287 KRTAP15-1Q3LI76 137 aa5.94□□□□□ -1.46
CDK5RAP3-217ENST00000580287 M0QZ58 72 aa5.92□□□□□ -1.46
CDK5RAP3-217ENST00000580287 KRTAP12-1P59990 96 aa5.91□□□□□ -1.46
CDK5RAP3-217ENST00000580287 R4GN34 69 aa5.91□□□□□ -1.46
CDK5RAP3-217ENST00000580287 LORP23490 312 aaPredicted RBP5.9□□□□□ -1.47
CDK5RAP3-217ENST00000580287 KRTAP9-8Q9BYQ0 159 aa5.79□□□□□ -1.48
CDK5RAP3-217ENST00000580287 MT2AP02795 61 aa5.77□□□□□ -1.49
CDK5RAP3-217ENST00000580287 MT1FP04733 61 aa5.76□□□□□ -1.49
CDK5RAP3-217ENST00000580287 KRTAP10-10P60014 251 aa5.74□□□□□ -1.49
CDK5RAP3-217ENST00000580287 KRTAP19-1Q8IUB9 90 aa5.63□□□□□ -1.51
CDK5RAP3-217ENST00000580287 PRO2289Q9P1D8 64 aa5.61□□□□□ -1.51
CDK5RAP3-217ENST00000580287 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
CDK5RAP3-217ENST00000580287 SPRR2GQ9BYE4 73 aa5.57□□□□□ -1.52
CDK5RAP3-217ENST00000580287 PLAC4Q8WY50 150 aa5.55□□□□□ -1.52
CDK5RAP3-217ENST00000580287 USH2AO75445 5202 aa5.54□□□□□ -1.52
CDK5RAP3-217ENST00000580287 FSIP2Q5CZC0 6907 aa5.48□□□□□ -1.53
CDK5RAP3-217ENST00000580287 MT1BP07438 61 aa5.42□□□□□ -1.54
CDK5RAP3-217ENST00000580287 KRTAP19-8Q3LI54 63 aa5.41□□□□□ -1.54
CDK5RAP3-217ENST00000580287 PP632Q6XCG6 107 aa5.37□□□□□ -1.55
CDK5RAP3-217ENST00000580287 TNP1P09430 55 aa5.31□□□□□ -1.56
CDK5RAP3-217ENST00000580287 SSPOA2VEC9 5147 aa5.25□□□□□ -1.57
CDK5RAP3-217ENST00000580287 MT1XP80297 61 aa5.24□□□□□ -1.57
CDK5RAP3-217ENST00000580287 KRTAP10-5P60370 271 aa5.23□□□□□ -1.57
CDK5RAP3-217ENST00000580287 SPRR5A0A1B0GTR4 108 aa5.13□□□□□ -1.59
CDK5RAP3-217ENST00000580287 KRTAP9-2Q9BYQ4 174 aa5.12□□□□□ -1.59
CDK5RAP3-217ENST00000580287 KMT2DO14686 5537 aa5.09□□□□□ -1.59
CDK5RAP3-217ENST00000580287 KRTAP10-7P60409 375 aaPredicted RBP5.08□□□□□ -1.6
CDK5RAP3-217ENST00000580287 LCE3AQ5TA76 89 aa5.06□□□□□ -1.6
CDK5RAP3-217ENST00000580287 KRTAP19-6Q3LI70 58 aa5.04□□□□□ -1.6
CDK5RAP3-217ENST00000580287 FCGBPQ9Y6R7 5405 aaPredicted RBP5.03□□□□□ -1.6
CDK5RAP3-217ENST00000580287 INE1O15225 51 aa5.03□□□□□ -1.6
CDK5RAP3-217ENST00000580287 KRTAP4-8A0A0G2JLE6 195 aa4.94□□□□□ -1.62
CDK5RAP3-217ENST00000580287 KRTAP4-8Q9BYQ9 185 aa4.94□□□□□ -1.62
CDK5RAP3-217ENST00000580287 KRTAP10-12P60413 245 aa4.94□□□□□ -1.62
CDK5RAP3-217ENST00000580287 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
CDK5RAP3-217ENST00000580287 KRTAP8-1Q8IUC2 63 aa4.87□□□□□ -1.63
CDK5RAP3-217ENST00000580287 MACF1Q9UPN3 7388 aaKnown RBP4.85□□□□□ -1.63
CDK5RAP3-217ENST00000580287 KRTAP12-3P60328 96 aa4.82□□□□□ -1.64
CDK5RAP3-217ENST00000580287 LCE5AQ5TCM9 118 aa4.78□□□□□ -1.64
CDK5RAP3-217ENST00000580287 SYNE2Q8WXH0 6885 aaKnown RBP4.76□□□□□ -1.65
CDK5RAP3-217ENST00000580287 KRTAP19-5Q3LI72 72 aa4.75□□□□□ -1.65
CDK5RAP3-217ENST00000580287 KRTAP9-6A0A140TA67 174 aa4.7□□□□□ -1.66
CDK5RAP3-217ENST00000580287 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms