RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 A8MUN3 132 aa5.39□□□□□ -1.55
SS18-213ENST00000579640 KRTAP19-2Q3LHN2 52 aa5.39□□□□□ -1.55
SS18-213ENST00000579640 H7BZZ5 65 aa5.39□□□□□ -1.55
SS18-213ENST00000579640 CYSTM1Q9H1C7 97 aa5.38□□□□□ -1.55
SS18-213ENST00000579640 H1FX-AS1Q4G0G2 97 aa5.37□□□□□ -1.55
SS18-213ENST00000579640 KRTAP3-1Q9BYR8 98 aa5.37□□□□□ -1.55
SS18-213ENST00000579640 DMAC1Q96GE9 116 aa5.36□□□□□ -1.55
SS18-213ENST00000579640 KRTAP4-8A0A0G2JLE6 195 aa5.32□□□□□ -1.56
SS18-213ENST00000579640 ACYP2P14621 99 aa5.31□□□□□ -1.56
SS18-213ENST00000579640 FLGP20930 4061 aaPredicted RBP5.3□□□□□ -1.56
SS18-213ENST00000579640 ATP5EP56381 51 aaPredicted RBP5.3□□□□□ -1.56
SS18-213ENST00000579640 TMEM258P61165 79 aa5.3□□□□□ -1.56
SS18-213ENST00000579640 KRTAP9-9Q9BYP9 154 aa5.29□□□□□ -1.56
SS18-213ENST00000579640 KRTAP9-4Q9BYQ2 154 aa5.29□□□□□ -1.56
SS18-213ENST00000579640 FAT4Q6V0I7 4981 aa5.28□□□□□ -1.56
SS18-213ENST00000579640 S4R3F8 94 aa5.28□□□□□ -1.56
SS18-213ENST00000579640 KRTAP4-12Q9BQ66 201 aa5.27□□□□□ -1.57
SS18-213ENST00000579640 MT1HP80294 61 aa5.26□□□□□ -1.57
SS18-213ENST00000579640 LCA10Q71F78 164 aa5.23□□□□□ -1.57
SS18-213ENST00000579640 CHKB-CPT1BH3BT56 60 aa5.22□□□□□ -1.57
SS18-213ENST00000579640 M0R2T5 61 aa5.21□□□□□ -1.58
SS18-213ENST00000579640 COA5Q86WW8 74 aa5.2□□□□□ -1.58
SS18-213ENST00000579640 CSAG1Q6PB30 78 aa5.2□□□□□ -1.58
SS18-213ENST00000579640 SPTSSBQ8NFR3 76 aa5.18□□□□□ -1.58
SS18-213ENST00000579640 KRTAP4-7Q9BYR0 210 aa5.17□□□□□ -1.58
SS18-213ENST00000579640 SERP1Q9Y6X1 66 aa5.13□□□□□ -1.59
SS18-213ENST00000579640 KRTAP10-6P60371 365 aaPredicted RBP5.11□□□□□ -1.59
SS18-213ENST00000579640 H0YAA0 97 aa5.07□□□□□ -1.6
SS18-213ENST00000579640 LCE1DQ5T752 114 aa5.07□□□□□ -1.6
SS18-213ENST00000579640 RPS28P62857 69 aaKnown RBP5.04□□□□□ -1.6
SS18-213ENST00000579640 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
SS18-213ENST00000579640 KRTAP19-1Q8IUB9 90 aa5.02□□□□□ -1.61
SS18-213ENST00000579640 MT2AP02795 61 aa5.01□□□□□ -1.61
SS18-213ENST00000579640 ADM2Q7Z4H4 148 aa5.01□□□□□ -1.61
SS18-213ENST00000579640 SEC61GP60059 68 aa4.99□□□□□ -1.61
SS18-213ENST00000579640 KRTAP10-10P60014 251 aa4.97□□□□□ -1.61
SS18-213ENST00000579640 SMIM26A0A096LP01 95 aa4.97□□□□□ -1.61
SS18-213ENST00000579640 MT1FP04733 61 aa4.97□□□□□ -1.61
SS18-213ENST00000579640 KRTAP4-9Q9BYQ8 210 aa4.96□□□□□ -1.62
SS18-213ENST00000579640 LINC01558Q9Y6Z2 57 aa4.96□□□□□ -1.62
SS18-213ENST00000579640 V9GYY9 64 aa4.95□□□□□ -1.62
SS18-213ENST00000579640 A0A1B0GU69 56 aa4.94□□□□□ -1.62
SS18-213ENST00000579640 CRIPTQ9P021 101 aa4.94□□□□□ -1.62
SS18-213ENST00000579640 P0C880 135 aa4.93□□□□□ -1.62
SS18-213ENST00000579640 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
SS18-213ENST00000579640 PRR15LQ9BU68 103 aa4.93□□□□□ -1.62
SS18-213ENST00000579640 Q1T7F1 81 aa4.91□□□□□ -1.62
SS18-213ENST00000579640 SVIPQ8NHG7 77 aa4.89□□□□□ -1.63
SS18-213ENST00000579640 KRTAP9-3Q9BYQ3 159 aa4.87□□□□□ -1.63
SS18-213ENST00000579640 R4GN34 69 aa4.86□□□□□ -1.63
SS18-213ENST00000579640 M0QZ58 72 aa4.85□□□□□ -1.63
SS18-213ENST00000579640 A0A1B0GU33 70 aa4.84□□□□□ -1.63
SS18-213ENST00000579640 SPRR2GQ9BYE4 73 aa4.84□□□□□ -1.63
SS18-213ENST00000579640 PSPHP1O15172 72 aa4.81□□□□□ -1.64
SS18-213ENST00000579640 Q5VV11 94 aa4.79□□□□□ -1.64
SS18-213ENST00000579640 UQCR11O14957 56 aa4.76□□□□□ -1.65
SS18-213ENST00000579640 KRTAP13-4Q3LI77 160 aa4.76□□□□□ -1.65
SS18-213ENST00000579640 H3BS24 57 aa4.74□□□□□ -1.65
SS18-213ENST00000579640 KRTAP19-8Q3LI54 63 aa4.74□□□□□ -1.65
SS18-213ENST00000579640 SPATA8Q6RVD6 105 aa4.74□□□□□ -1.65
SS18-213ENST00000579640 LINC01554Q52M75 96 aa4.73□□□□□ -1.65
SS18-213ENST00000579640 KRTAP5-3Q6L8H2 238 aa4.72□□□□□ -1.65
SS18-213ENST00000579640 KRTAP4-11Q9BYQ6 195 aa4.71□□□□□ -1.66
SS18-213ENST00000579640 A6NN06 94 aa4.69□□□□□ -1.66
SS18-213ENST00000579640 A6NED7 52 aa4.69□□□□□ -1.66
SS18-213ENST00000579640 MIR22HGQ0VDD5 57 aa4.69□□□□□ -1.66
SS18-213ENST00000579640 CRCT1Q9UGL9 99 aa4.69□□□□□ -1.66
SS18-213ENST00000579640 A0A0D9SG42 100 aa4.67□□□□□ -1.66
SS18-213ENST00000579640 MT1BP07438 61 aa4.67□□□□□ -1.66
SS18-213ENST00000579640 PLAC4Q8WY50 150 aa4.65□□□□□ -1.66
SS18-213ENST00000579640 USH2AO75445 5202 aa4.64□□□□□ -1.67
SS18-213ENST00000579640 A8MU10 97 aa4.64□□□□□ -1.67
SS18-213ENST00000579640 KRTAP12-1P59990 96 aa4.59□□□□□ -1.67
SS18-213ENST00000579640 SPINT4Q6UDR6 99 aa4.59□□□□□ -1.67
SS18-213ENST00000579640 CDC42SE1Q9NRR8 79 aa4.58□□□□□ -1.68
SS18-213ENST00000579640 FSIP2Q5CZC0 6907 aa4.57□□□□□ -1.68
SS18-213ENST00000579640 KRTAP12-2P59991 146 aa4.56□□□□□ -1.68
SS18-213ENST00000579640 K7ERS5 55 aa4.54□□□□□ -1.68
SS18-213ENST00000579640 KRTAP19-6Q3LI70 58 aa4.54□□□□□ -1.68
SS18-213ENST00000579640 CAMK2N1Q7Z7J9 78 aa4.53□□□□□ -1.68
SS18-213ENST00000579640 SSPOA2VEC9 5147 aa4.51□□□□□ -1.69
SS18-213ENST00000579640 PRO2289Q9P1D8 64 aa4.51□□□□□ -1.69
SS18-213ENST00000579640 KRTAP10-5P60370 271 aa4.49□□□□□ -1.69
SS18-213ENST00000579640 MT1XP80297 61 aa4.48□□□□□ -1.69
SS18-213ENST00000579640 BRK1Q8WUW1 75 aa4.48□□□□□ -1.69
SS18-213ENST00000579640 PRO0628Q9UI54 55 aa4.44□□□□□ -1.7
SS18-213ENST00000579640 FCGBPQ9Y6R7 5405 aaPredicted RBP4.37□□□□□ -1.71
SS18-213ENST00000579640 LCE5AQ5TCM9 118 aa4.35□□□□□ -1.71
SS18-213ENST00000579640 C10orf95Q9H7T3 257 aa4.35□□□□□ -1.71
SS18-213ENST00000579640 LCE4AQ5TA78 99 aa4.33□□□□□ -1.72
SS18-213ENST00000579640 ROMO1P60602 79 aa4.3□□□□□ -1.72
SS18-213ENST00000579640 KRTAP19-4Q3LI73 84 aa4.3□□□□□ -1.72
SS18-213ENST00000579640 TNP1P09430 55 aa4.29□□□□□ -1.72
SS18-213ENST00000579640 KRTAP10-7P60409 375 aaPredicted RBP4.27□□□□□ -1.73
SS18-213ENST00000579640 KRTAP10-12P60413 245 aa4.27□□□□□ -1.73
SS18-213ENST00000579640 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
SS18-213ENST00000579640 KRTAP9-7A8MTY7 169 aa4.25□□□□□ -1.73
SS18-213ENST00000579640 PMAIP1Q13794 54 aa4.24□□□□□ -1.73
SS18-213ENST00000579640 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
SS18-213ENST00000579640 KRTAP6-3Q3LI67 103 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms