RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 COA5Q86WW8 74 aa7.54□□□□□ -1.2
SS18-206ENST00000577572 S4R3F8 94 aa7.54□□□□□ -1.2
SS18-206ENST00000577572 CHKB-CPT1BH3BT56 60 aa7.53□□□□□ -1.2
SS18-206ENST00000577572 SERP1Q9Y6X1 66 aa7.53□□□□□ -1.2
SS18-206ENST00000577572 SPTSSBQ8NFR3 76 aa7.52□□□□□ -1.21
SS18-206ENST00000577572 LCE2BO14633 110 aa7.49□□□□□ -1.21
SS18-206ENST00000577572 RPS28P62857 69 aaKnown RBP7.49□□□□□ -1.21
SS18-206ENST00000577572 LCA10Q71F78 164 aa7.48□□□□□ -1.21
SS18-206ENST00000577572 FAT4Q6V0I7 4981 aa7.47□□□□□ -1.21
SS18-206ENST00000577572 FLGP20930 4061 aaPredicted RBP7.46□□□□□ -1.22
SS18-206ENST00000577572 CSAG1Q6PB30 78 aa7.45□□□□□ -1.22
SS18-206ENST00000577572 MT1HP80294 61 aa7.41□□□□□ -1.22
SS18-206ENST00000577572 SMIM26A0A096LP01 95 aa7.32□□□□□ -1.24
SS18-206ENST00000577572 H0YAA0 97 aa7.32□□□□□ -1.24
SS18-206ENST00000577572 M0R2T5 61 aa7.32□□□□□ -1.24
SS18-206ENST00000577572 LCE2AQ5TA79 106 aaPredicted RBP7.28□□□□□ -1.24
SS18-206ENST00000577572 V9GYY9 64 aa7.28□□□□□ -1.24
SS18-206ENST00000577572 SEC61GP60059 68 aa7.24□□□□□ -1.25
SS18-206ENST00000577572 LINC01558Q9Y6Z2 57 aa7.24□□□□□ -1.25
SS18-206ENST00000577572 Q1T7F1 81 aa7.22□□□□□ -1.25
SS18-206ENST00000577572 PRR15LQ9BU68 103 aa7.19□□□□□ -1.26
SS18-206ENST00000577572 KRTAP10-6P60371 365 aaPredicted RBP7.18□□□□□ -1.26
SS18-206ENST00000577572 A0A1B0GU69 56 aa7.17□□□□□ -1.26
SS18-206ENST00000577572 ADM2Q7Z4H4 148 aa7.16□□□□□ -1.26
SS18-206ENST00000577572 LORP23490 312 aaPredicted RBP7.15□□□□□ -1.26
SS18-206ENST00000577572 KRTAP9-8Q9BYQ0 159 aa7.12□□□□□ -1.27
SS18-206ENST00000577572 LOC100996750A0A140TA64 210 aa7.11□□□□□ -1.27
SS18-206ENST00000577572 KRTAP4-6Q9BYQ5 205 aa7.11□□□□□ -1.27
SS18-206ENST00000577572 CRIPTQ9P021 101 aa7.1□□□□□ -1.27
SS18-206ENST00000577572 MT2AP02795 61 aa7.06□□□□□ -1.28
SS18-206ENST00000577572 P0C880 135 aa7.05□□□□□ -1.28
SS18-206ENST00000577572 A0A1B0GU33 70 aa7.02□□□□□ -1.29
SS18-206ENST00000577572 M0QZ58 72 aa7.01□□□□□ -1.29
SS18-206ENST00000577572 KRTAP10-10P60014 251 aa7.01□□□□□ -1.29
SS18-206ENST00000577572 MT1FP04733 61 aa7□□□□□ -1.29
SS18-206ENST00000577572 PSPHP1O15172 72 aa6.99□□□□□ -1.29
SS18-206ENST00000577572 Q5VV11 94 aa6.97□□□□□ -1.29
SS18-206ENST00000577572 R4GN34 69 aa6.96□□□□□ -1.3
SS18-206ENST00000577572 UQCR11O14957 56 aa6.95□□□□□ -1.3
SS18-206ENST00000577572 SPRR2GQ9BYE4 73 aa6.91□□□□□ -1.3
SS18-206ENST00000577572 KRTAP9-3Q9BYQ3 159 aa6.88□□□□□ -1.31
SS18-206ENST00000577572 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
SS18-206ENST00000577572 A6NED7 52 aa6.83□□□□□ -1.32
SS18-206ENST00000577572 KRTAP13-4Q3LI77 160 aa6.83□□□□□ -1.32
SS18-206ENST00000577572 MIR22HGQ0VDD5 57 aa6.82□□□□□ -1.32
SS18-206ENST00000577572 SPATA8Q6RVD6 105 aa6.81□□□□□ -1.32
SS18-206ENST00000577572 A6NN06 94 aa6.79□□□□□ -1.32
SS18-206ENST00000577572 KRTAP19-8Q3LI54 63 aa6.76□□□□□ -1.33
SS18-206ENST00000577572 CDC42SE1Q9NRR8 79 aa6.73□□□□□ -1.33
SS18-206ENST00000577572 LINC01554Q52M75 96 aa6.72□□□□□ -1.33
SS18-206ENST00000577572 A0A0D9SG42 100 aa6.68□□□□□ -1.34
SS18-206ENST00000577572 A8MU10 97 aa6.67□□□□□ -1.34
SS18-206ENST00000577572 KRTAP9-2Q9BYQ4 174 aa6.65□□□□□ -1.34
SS18-206ENST00000577572 PLAC4Q8WY50 150 aa6.64□□□□□ -1.35
SS18-206ENST00000577572 K7ERS5 55 aa6.63□□□□□ -1.35
SS18-206ENST00000577572 KRTAP12-1P59990 96 aa6.61□□□□□ -1.35
SS18-206ENST00000577572 MT1BP07438 61 aa6.6□□□□□ -1.35
SS18-206ENST00000577572 BRK1Q8WUW1 75 aa6.59□□□□□ -1.35
SS18-206ENST00000577572 SPINT4Q6UDR6 99 aa6.57□□□□□ -1.36
SS18-206ENST00000577572 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
SS18-206ENST00000577572 USH2AO75445 5202 aa6.54□□□□□ -1.36
SS18-206ENST00000577572 KRTAP9-6A0A140TA67 174 aa6.5□□□□□ -1.37
SS18-206ENST00000577572 CAMK2N1Q7Z7J9 78 aa6.48□□□□□ -1.37
SS18-206ENST00000577572 PRO2289Q9P1D8 64 aa6.43□□□□□ -1.38
SS18-206ENST00000577572 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
SS18-206ENST00000577572 KRTAP4-8Q9BYQ9 185 aa6.41□□□□□ -1.38
SS18-206ENST00000577572 KRTAP19-6Q3LI70 58 aa6.39□□□□□ -1.39
SS18-206ENST00000577572 KRTAP10-5P60370 271 aa6.36□□□□□ -1.39
SS18-206ENST00000577572 SSPOA2VEC9 5147 aa6.35□□□□□ -1.39
SS18-206ENST00000577572 MT1XP80297 61 aa6.35□□□□□ -1.39
SS18-206ENST00000577572 FSIP2Q5CZC0 6907 aa6.33□□□□□ -1.4
SS18-206ENST00000577572 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.29□□□□□ -1.4
SS18-206ENST00000577572 ROMO1P60602 79 aa6.26□□□□□ -1.41
SS18-206ENST00000577572 PMAIP1Q13794 54 aa6.26□□□□□ -1.41
SS18-206ENST00000577572 CRCT1Q9UGL9 99 aa6.26□□□□□ -1.41
SS18-206ENST00000577572 C10orf95Q9H7T3 257 aa6.25□□□□□ -1.41
SS18-206ENST00000577572 TNP1P09430 55 aa6.18□□□□□ -1.42
SS18-206ENST00000577572 KRTAP25-1Q3LHN0 102 aa6.18□□□□□ -1.42
SS18-206ENST00000577572 FCGBPQ9Y6R7 5405 aaPredicted RBP6.12□□□□□ -1.43
SS18-206ENST00000577572 LCE3BQ5TA77 95 aa6.1□□□□□ -1.43
SS18-206ENST00000577572 KRTAP10-12P60413 245 aa6.08□□□□□ -1.44
SS18-206ENST00000577572 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
SS18-206ENST00000577572 KRTAP10-7P60409 375 aaPredicted RBP6.04□□□□□ -1.44
SS18-206ENST00000577572 KRTAP4-12Q9BQ66 201 aa6.02□□□□□ -1.45
SS18-206ENST00000577572 PP632Q6XCG6 107 aa5.97□□□□□ -1.45
SS18-206ENST00000577572 KTN1-AS1Q86SY8 53 aa5.96□□□□□ -1.46
SS18-206ENST00000577572 KRTAP9-9Q9BYP9 154 aa5.96□□□□□ -1.46
SS18-206ENST00000577572 KRTAP9-4Q9BYQ2 154 aa5.96□□□□□ -1.46
SS18-206ENST00000577572 KRTAP4-8A0A0G2JLE6 195 aa5.95□□□□□ -1.46
SS18-206ENST00000577572 MACF1Q9UPN3 7388 aaKnown RBP5.85□□□□□ -1.47
SS18-206ENST00000577572 LCE3AQ5TA76 89 aa5.85□□□□□ -1.47
SS18-206ENST00000577572 KRTAP8-1Q8IUC2 63 aa5.83□□□□□ -1.48
SS18-206ENST00000577572 KRTAP9-7A8MTY7 169 aa5.82□□□□□ -1.48
SS18-206ENST00000577572 KMT2DO14686 5537 aa5.78□□□□□ -1.48
SS18-206ENST00000577572 PRAC1Q96KF2 57 aa5.77□□□□□ -1.49
SS18-206ENST00000577572 KRTAP4-7Q9BYR0 210 aa5.76□□□□□ -1.49
SS18-206ENST00000577572 LCE1DQ5T752 114 aa5.7□□□□□ -1.5
SS18-206ENST00000577572 KRTAP12-3P60328 96 aa5.69□□□□□ -1.5
SS18-206ENST00000577572 KRTAP5-9P26371 169 aa5.68□□□□□ -1.5
SS18-206ENST00000577572 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms