RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SMIM26A0A096LP01 95 aa8.4□□□□□ -1.06
NUP88-210ENST00000574867 KRTAP3-1Q9BYR8 98 aa8.39□□□□□ -1.07
NUP88-210ENST00000574867 PRO0628Q9UI54 55 aa8.39□□□□□ -1.07
NUP88-210ENST00000574867 KRTAP10-6P60371 365 aaPredicted RBP8.33□□□□□ -1.08
NUP88-210ENST00000574867 A8MUN3 132 aa8.33□□□□□ -1.08
NUP88-210ENST00000574867 LORP23490 312 aaPredicted RBP8.3□□□□□ -1.08
NUP88-210ENST00000574867 S4R3F8 94 aa8.29□□□□□ -1.08
NUP88-210ENST00000574867 DMAC1Q96GE9 116 aa8.23□□□□□ -1.09
NUP88-210ENST00000574867 LCA10Q71F78 164 aa8.22□□□□□ -1.09
NUP88-210ENST00000574867 BRK1Q8WUW1 75 aa8.22□□□□□ -1.09
NUP88-210ENST00000574867 CSAG1Q6PB30 78 aa8.17□□□□□ -1.1
NUP88-210ENST00000574867 SPANXA2-OT1Q8N9U9 137 aa8.17□□□□□ -1.1
NUP88-210ENST00000574867 KRTAP9-8Q9BYQ0 159 aa8.16□□□□□ -1.1
NUP88-210ENST00000574867 KRTAP3-3Q9BYR6 98 aa8.14□□□□□ -1.11
NUP88-210ENST00000574867 ACYP2P14621 99 aa8.11□□□□□ -1.11
NUP88-210ENST00000574867 MT2AP02795 61 aa8.1□□□□□ -1.11
NUP88-210ENST00000574867 Q1T7F1 81 aa8.04□□□□□ -1.12
NUP88-210ENST00000574867 MT1FP04733 61 aa8.04□□□□□ -1.12
NUP88-210ENST00000574867 V9GYY9 64 aa8.04□□□□□ -1.12
NUP88-210ENST00000574867 KRTAP10-10P60014 251 aa8.02□□□□□ -1.12
NUP88-210ENST00000574867 LCE2DQ5TA82 110 aaPredicted RBP8□□□□□ -1.13
NUP88-210ENST00000574867 CHKB-CPT1BH3BT56 60 aa7.98□□□□□ -1.13
NUP88-210ENST00000574867 SPTSSBQ8NFR3 76 aa7.96□□□□□ -1.14
NUP88-210ENST00000574867 H0YAA0 97 aa7.94□□□□□ -1.14
NUP88-210ENST00000574867 PSPHP1O15172 72 aa7.94□□□□□ -1.14
NUP88-210ENST00000574867 KRTAP9-2Q9BYQ4 174 aa7.94□□□□□ -1.14
NUP88-210ENST00000574867 SEC61GP60059 68 aa7.91□□□□□ -1.14
NUP88-210ENST00000574867 PMAIP1Q13794 54 aa7.89□□□□□ -1.15
NUP88-210ENST00000574867 COA5Q86WW8 74 aa7.89□□□□□ -1.15
NUP88-210ENST00000574867 KRTAP9-3Q9BYQ3 159 aa7.89□□□□□ -1.15
NUP88-210ENST00000574867 ADM2Q7Z4H4 148 aa7.83□□□□□ -1.16
NUP88-210ENST00000574867 Q5VV11 94 aa7.82□□□□□ -1.16
NUP88-210ENST00000574867 CRIPTQ9P021 101 aa7.79□□□□□ -1.16
NUP88-210ENST00000574867 PRR15LQ9BU68 103 aa7.75□□□□□ -1.17
NUP88-210ENST00000574867 LCE2BO14633 110 aa7.74□□□□□ -1.17
NUP88-210ENST00000574867 A8MU10 97 aa7.73□□□□□ -1.17
NUP88-210ENST00000574867 KRTAP19-1Q8IUB9 90 aa7.72□□□□□ -1.17
NUP88-210ENST00000574867 SPRR2GQ9BYE4 73 aa7.72□□□□□ -1.17
NUP88-210ENST00000574867 KRTAP3-2Q9BYR7 98 aa7.72□□□□□ -1.17
NUP88-210ENST00000574867 P0C880 135 aa7.71□□□□□ -1.18
NUP88-210ENST00000574867 A6NED7 52 aa7.67□□□□□ -1.18
NUP88-210ENST00000574867 KTN1-AS1Q86SY8 53 aa7.66□□□□□ -1.18
NUP88-210ENST00000574867 USH2AO75445 5202 aa7.63□□□□□ -1.19
NUP88-210ENST00000574867 R4GN34 69 aa7.63□□□□□ -1.19
NUP88-210ENST00000574867 CDC42SE1Q9NRR8 79 aa7.61□□□□□ -1.19
NUP88-210ENST00000574867 LINC01558Q9Y6Z2 57 aa7.6□□□□□ -1.19
NUP88-210ENST00000574867 KRTAP19-8Q3LI54 63 aa7.58□□□□□ -1.2
NUP88-210ENST00000574867 CRCT1Q9UGL9 99 aa7.58□□□□□ -1.2
NUP88-210ENST00000574867 FSIP2Q5CZC0 6907 aa7.58□□□□□ -1.2
NUP88-210ENST00000574867 M0QZ58 72 aa7.58□□□□□ -1.2
NUP88-210ENST00000574867 A6NN06 94 aa7.57□□□□□ -1.2
NUP88-210ENST00000574867 KRTAP9-6A0A140TA67 174 aa7.52□□□□□ -1.21
NUP88-210ENST00000574867 MT1BP07438 61 aa7.5□□□□□ -1.21
NUP88-210ENST00000574867 A0A1B0GU69 56 aa7.49□□□□□ -1.21
NUP88-210ENST00000574867 SSPOA2VEC9 5147 aa7.47□□□□□ -1.21
NUP88-210ENST00000574867 KRTAP19-6Q3LI70 58 aa7.42□□□□□ -1.22
NUP88-210ENST00000574867 LINC01554Q52M75 96 aa7.42□□□□□ -1.22
NUP88-210ENST00000574867 A0A1B0GU33 70 aa7.4□□□□□ -1.22
NUP88-210ENST00000574867 KRTAP13-4Q3LI77 160 aa7.38□□□□□ -1.23
NUP88-210ENST00000574867 PLAC4Q8WY50 150 aa7.36□□□□□ -1.23
NUP88-210ENST00000574867 SPATA8Q6RVD6 105 aa7.29□□□□□ -1.24
NUP88-210ENST00000574867 KRTAP10-5P60370 271 aa7.25□□□□□ -1.25
NUP88-210ENST00000574867 FCGBPQ9Y6R7 5405 aaPredicted RBP7.24□□□□□ -1.25
NUP88-210ENST00000574867 PRAC1Q96KF2 57 aa7.22□□□□□ -1.25
NUP88-210ENST00000574867 A0A0D9SG42 100 aa7.21□□□□□ -1.25
NUP88-210ENST00000574867 PRO2289Q9P1D8 64 aa7.2□□□□□ -1.26
NUP88-210ENST00000574867 UQCR11O14957 56 aa7.18□□□□□ -1.26
NUP88-210ENST00000574867 MIR22HGQ0VDD5 57 aa7.18□□□□□ -1.26
NUP88-210ENST00000574867 MT1XP80297 61 aa7.15□□□□□ -1.26
NUP88-210ENST00000574867 KRTAP12-1P59990 96 aa7.09□□□□□ -1.27
NUP88-210ENST00000574867 SPINT4Q6UDR6 99 aa7.08□□□□□ -1.28
NUP88-210ENST00000574867 CAMK2N1Q7Z7J9 78 aa7.08□□□□□ -1.28
NUP88-210ENST00000574867 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
NUP88-210ENST00000574867 KRTAP12-2P59991 146 aa7.04□□□□□ -1.28
NUP88-210ENST00000574867 MACF1Q9UPN3 7388 aaKnown RBP6.91□□□□□ -1.3
NUP88-210ENST00000574867 K7ERS5 55 aa6.86□□□□□ -1.31
NUP88-210ENST00000574867 KRTAP10-7P60409 375 aaPredicted RBP6.83□□□□□ -1.32
NUP88-210ENST00000574867 H3BS24 57 aa6.82□□□□□ -1.32
NUP88-210ENST00000574867 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
NUP88-210ENST00000574867 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
NUP88-210ENST00000574867 KRTAP25-1Q3LHN0 102 aa6.79□□□□□ -1.32
NUP88-210ENST00000574867 SYNE2Q8WXH0 6885 aaKnown RBP6.76□□□□□ -1.33
NUP88-210ENST00000574867 KRTAP6-3Q3LI67 103 aa6.75□□□□□ -1.33
NUP88-210ENST00000574867 C10orf95Q9H7T3 257 aa6.72□□□□□ -1.33
NUP88-210ENST00000574867 ROMO1P60602 79 aa6.68□□□□□ -1.34
NUP88-210ENST00000574867 KRTAP8-1Q8IUC2 63 aa6.68□□□□□ -1.34
NUP88-210ENST00000574867 KMT2DO14686 5537 aa6.67□□□□□ -1.34
NUP88-210ENST00000574867 KRTAP4-8A0A0G2JLE6 195 aa6.66□□□□□ -1.34
NUP88-210ENST00000574867 KRTAP4-8Q9BYQ9 185 aa6.66□□□□□ -1.34
NUP88-210ENST00000574867 TNP1P09430 55 aa6.65□□□□□ -1.34
NUP88-210ENST00000574867 KRTAP5-9P26371 169 aa6.64□□□□□ -1.35
NUP88-210ENST00000574867 SPRR2FQ96RM1 72 aa6.54□□□□□ -1.36
NUP88-210ENST00000574867 LCE3AQ5TA76 89 aa6.43□□□□□ -1.38
NUP88-210ENST00000574867 MUC12Q9UKN1 5478 aa6.42□□□□□ -1.38
NUP88-210ENST00000574867 KRTAP19-7Q3SYF9 63 aa6.38□□□□□ -1.39
NUP88-210ENST00000574867 KRTAP19-5Q3LI72 72 aa6.34□□□□□ -1.39
NUP88-210ENST00000574867 SPRR2EP22531 72 aa6.34□□□□□ -1.4
NUP88-210ENST00000574867 SPRR2BP35325 72 aa6.34□□□□□ -1.4
NUP88-210ENST00000574867 SPRR2AP35326 72 aa6.34□□□□□ -1.4
NUP88-210ENST00000574867 NEBP20929 6669 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms