RNA–Protein interactions for RNA: ENST00000571043.5

RPAIN-208, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,547 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-208ENST00000571043 COX6B2Q6YFQ2 88 aa9□□□□□ -0.97
RPAIN-208ENST00000571043 KRTAP3-1Q9BYR8 98 aa9□□□□□ -0.97
RPAIN-208ENST00000571043 Q5VV11 94 aa9□□□□□ -0.97
RPAIN-208ENST00000571043 SEC61BP60468 96 aaKnown RBP8.98□□□□□ -0.97
RPAIN-208ENST00000571043 SPTSSBQ8NFR3 76 aa8.93□□□□□ -0.98
RPAIN-208ENST00000571043 RNF213Q63HN8 5207 aa8.93□□□□□ -0.98
RPAIN-208ENST00000571043 BRK1Q8WUW1 75 aa8.86□□□□□ -0.99
RPAIN-208ENST00000571043 MUC2Q02817 5179 aa8.86□□□□□ -0.99
RPAIN-208ENST00000571043 A0A1B0GU69 56 aa8.85□□□□□ -0.99
RPAIN-208ENST00000571043 PRO0628Q9UI54 55 aa8.82□□□□□ -1
RPAIN-208ENST00000571043 KRTAP4-1Q9BYQ7 146 aa8.81□□□□□ -1
RPAIN-208ENST00000571043 A6NED7 52 aa8.79□□□□□ -1
RPAIN-208ENST00000571043 SEC61GP60059 68 aa8.74□□□□□ -1.01
RPAIN-208ENST00000571043 RBM12B-AS1Q9P1G2 102 aa8.72□□□□□ -1.01
RPAIN-208ENST00000571043 H1FX-AS1Q4G0G2 97 aa8.71□□□□□ -1.01
RPAIN-208ENST00000571043 CDC42SE1Q9NRR8 79 aa8.7□□□□□ -1.02
RPAIN-208ENST00000571043 S4R3F8 94 aa8.7□□□□□ -1.02
RPAIN-208ENST00000571043 LCA10Q71F78 164 aa8.68□□□□□ -1.02
RPAIN-208ENST00000571043 SVIPQ8NHG7 77 aa8.65□□□□□ -1.02
RPAIN-208ENST00000571043 UQCR11O14957 56 aa8.63□□□□□ -1.03
RPAIN-208ENST00000571043 A8MU10 97 aa8.61□□□□□ -1.03
RPAIN-208ENST00000571043 FAT4Q6V0I7 4981 aa8.58□□□□□ -1.04
RPAIN-208ENST00000571043 SPATA8Q6RVD6 105 aa8.58□□□□□ -1.04
RPAIN-208ENST00000571043 MIR22HGQ0VDD5 57 aa8.54□□□□□ -1.04
RPAIN-208ENST00000571043 KRTAP19-2Q3LHN2 52 aa8.54□□□□□ -1.04
RPAIN-208ENST00000571043 FLGP20930 4061 aaPredicted RBP8.52□□□□□ -1.05
RPAIN-208ENST00000571043 A0A1B0GU33 70 aa8.51□□□□□ -1.05
RPAIN-208ENST00000571043 LCE2CQ5TA81 110 aa8.48□□□□□ -1.05
RPAIN-208ENST00000571043 CSAG1Q6PB30 78 aa8.48□□□□□ -1.05
RPAIN-208ENST00000571043 KRTAP10-6P60371 365 aaPredicted RBP8.44□□□□□ -1.06
RPAIN-208ENST00000571043 H0YAA0 97 aa8.39□□□□□ -1.07
RPAIN-208ENST00000571043 PMAIP1Q13794 54 aa8.39□□□□□ -1.07
RPAIN-208ENST00000571043 LCE2BO14633 110 aa8.34□□□□□ -1.08
RPAIN-208ENST00000571043 ADM2Q7Z4H4 148 aa8.34□□□□□ -1.08
RPAIN-208ENST00000571043 A6NN06 94 aa8.33□□□□□ -1.08
RPAIN-208ENST00000571043 P0C880 135 aa8.32□□□□□ -1.08
RPAIN-208ENST00000571043 MT1HP80294 61 aa8.31□□□□□ -1.08
RPAIN-208ENST00000571043 LCE2AQ5TA79 106 aaPredicted RBP8.29□□□□□ -1.08
RPAIN-208ENST00000571043 KRTAP13-4Q3LI77 160 aa8.23□□□□□ -1.09
RPAIN-208ENST00000571043 M0R2T5 61 aa8.19□□□□□ -1.1
RPAIN-208ENST00000571043 M0QZ58 72 aa8.17□□□□□ -1.1
RPAIN-208ENST00000571043 K7ERS5 55 aa8.13□□□□□ -1.11
RPAIN-208ENST00000571043 KTN1-AS1Q86SY8 53 aa8.13□□□□□ -1.11
RPAIN-208ENST00000571043 A0A0D9SG42 100 aa8.08□□□□□ -1.12
RPAIN-208ENST00000571043 LORP23490 312 aaPredicted RBP8.05□□□□□ -1.12
RPAIN-208ENST00000571043 R4GN34 69 aa8.02□□□□□ -1.13
RPAIN-208ENST00000571043 KRTAP9-8Q9BYQ0 159 aa7.98□□□□□ -1.13
RPAIN-208ENST00000571043 KRTAP12-1P59990 96 aa7.94□□□□□ -1.14
RPAIN-208ENST00000571043 KRTAP12-2P59991 146 aa7.92□□□□□ -1.14
RPAIN-208ENST00000571043 CRIPTQ9P021 101 aa7.9□□□□□ -1.14
RPAIN-208ENST00000571043 MT2AP02795 61 aa7.89□□□□□ -1.15
RPAIN-208ENST00000571043 SPINT4Q6UDR6 99 aa7.89□□□□□ -1.15
RPAIN-208ENST00000571043 LINC01554Q52M75 96 aa7.86□□□□□ -1.15
RPAIN-208ENST00000571043 MT1FP04733 61 aa7.83□□□□□ -1.16
RPAIN-208ENST00000571043 ROMO1P60602 79 aa7.83□□□□□ -1.16
RPAIN-208ENST00000571043 KRTAP9-2Q9BYQ4 174 aa7.83□□□□□ -1.16
RPAIN-208ENST00000571043 PRAC1Q96KF2 57 aa7.83□□□□□ -1.16
RPAIN-208ENST00000571043 KRTAP10-10P60014 251 aa7.81□□□□□ -1.16
RPAIN-208ENST00000571043 KRTAP9-3Q9BYQ3 159 aa7.71□□□□□ -1.18
RPAIN-208ENST00000571043 KRTAP9-6A0A140TA67 174 aa7.66□□□□□ -1.18
RPAIN-208ENST00000571043 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
RPAIN-208ENST00000571043 KRTAP25-1Q3LHN0 102 aa7.62□□□□□ -1.19
RPAIN-208ENST00000571043 KRTAP19-1Q8IUB9 90 aa7.59□□□□□ -1.19
RPAIN-208ENST00000571043 CAMK2N1Q7Z7J9 78 aa7.54□□□□□ -1.2
RPAIN-208ENST00000571043 USH2AO75445 5202 aa7.53□□□□□ -1.2
RPAIN-208ENST00000571043 C10orf95Q9H7T3 257 aa7.5□□□□□ -1.21
RPAIN-208ENST00000571043 FSIP2Q5CZC0 6907 aa7.46□□□□□ -1.22
RPAIN-208ENST00000571043 PLAC4Q8WY50 150 aa7.45□□□□□ -1.22
RPAIN-208ENST00000571043 KRTAP19-8Q3LI54 63 aa7.43□□□□□ -1.22
RPAIN-208ENST00000571043 MT1BP07438 61 aa7.35□□□□□ -1.23
RPAIN-208ENST00000571043 SSPOA2VEC9 5147 aa7.34□□□□□ -1.23
RPAIN-208ENST00000571043 CRCT1Q9UGL9 99 aa7.34□□□□□ -1.23
RPAIN-208ENST00000571043 TNP1P09430 55 aa7.24□□□□□ -1.25
RPAIN-208ENST00000571043 PP632Q6XCG6 107 aa7.19□□□□□ -1.26
RPAIN-208ENST00000571043 KRTAP19-6Q3LI70 58 aa7.18□□□□□ -1.26
RPAIN-208ENST00000571043 KRTAP23-1A1A580 65 aa7.14□□□□□ -1.27
RPAIN-208ENST00000571043 FCGBPQ9Y6R7 5405 aaPredicted RBP7.09□□□□□ -1.27
RPAIN-208ENST00000571043 KRTAP10-5P60370 271 aa7.09□□□□□ -1.27
RPAIN-208ENST00000571043 MT1XP80297 61 aa7.09□□□□□ -1.27
RPAIN-208ENST00000571043 PRO2289Q9P1D8 64 aa7.01□□□□□ -1.29
RPAIN-208ENST00000571043 LCE3AQ5TA76 89 aa6.86□□□□□ -1.31
RPAIN-208ENST00000571043 KRTAP9-7A8MTY7 169 aa6.86□□□□□ -1.31
RPAIN-208ENST00000571043 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.86□□□□□ -1.31
RPAIN-208ENST00000571043 LOC100996750A0A140TA64 210 aa6.83□□□□□ -1.32
RPAIN-208ENST00000571043 KRTAP4-6Q9BYQ5 205 aa6.83□□□□□ -1.32
RPAIN-208ENST00000571043 KRTAP10-7P60409 375 aaPredicted RBP6.81□□□□□ -1.32
RPAIN-208ENST00000571043 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
RPAIN-208ENST00000571043 KRTAP15-1Q3LI76 137 aa6.81□□□□□ -1.32
RPAIN-208ENST00000571043 MACF1Q9UPN3 7388 aaKnown RBP6.8□□□□□ -1.32
RPAIN-208ENST00000571043 KRTAP8-1Q8IUC2 63 aa6.77□□□□□ -1.33
RPAIN-208ENST00000571043 KMT2DO14686 5537 aa6.68□□□□□ -1.34
RPAIN-208ENST00000571043 SYNE2Q8WXH0 6885 aaKnown RBP6.66□□□□□ -1.34
RPAIN-208ENST00000571043 KRTAP12-3P60328 96 aa6.59□□□□□ -1.35
RPAIN-208ENST00000571043 KRTAP4-8A0A0G2JLE6 195 aa6.55□□□□□ -1.36
RPAIN-208ENST00000571043 KRTAP4-8Q9BYQ9 185 aa6.55□□□□□ -1.36
RPAIN-208ENST00000571043 SPRR5A0A1B0GTR4 108 aa6.47□□□□□ -1.37
RPAIN-208ENST00000571043 KRTAP19-5Q3LI72 72 aa6.46□□□□□ -1.37
RPAIN-208ENST00000571043 KRTAP6-3Q3LI67 103 aa6.45□□□□□ -1.38
RPAIN-208ENST00000571043 H3BS24 57 aa6.44□□□□□ -1.38
RPAIN-208ENST00000571043 KRTAP5-9P26371 169 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms