RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM236BA0A1B0GV22 79 aa8.31□□□□□ -1.08
CLN3-217ENST00000565354 KRTAP3-1Q9BYR8 98 aa8.3□□□□□ -1.08
CLN3-217ENST00000565354 H3BPC8 53 aa8.29□□□□□ -1.08
CLN3-217ENST00000565354 S4R3F8 94 aa8.29□□□□□ -1.08
CLN3-217ENST00000565354 KRTAP10-10P60014 251 aa8.28□□□□□ -1.08
CLN3-217ENST00000565354 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
CLN3-217ENST00000565354 KLKP1Q107X0 134 aa8.23□□□□□ -1.09
CLN3-217ENST00000565354 TRAV7A0A075B6U4 112 aa8.22□□□□□ -1.09
CLN3-217ENST00000565354 KRTAP19-6Q3LI70 58 aa8.2□□□□□ -1.1
CLN3-217ENST00000565354 LCA10Q71F78 164 aa8.19□□□□□ -1.1
CLN3-217ENST00000565354 CSAG1Q6PB30 78 aa8.18□□□□□ -1.1
CLN3-217ENST00000565354 A8MUN3 132 aa8.17□□□□□ -1.1
CLN3-217ENST00000565354 KRTAP6-3Q3LI67 103 aa8.15□□□□□ -1.1
CLN3-217ENST00000565354 NDUFC1O43677 76 aa8.07□□□□□ -1.12
CLN3-217ENST00000565354 SERP2Q8N6R1 65 aa8.06□□□□□ -1.12
CLN3-217ENST00000565354 KRTAP3-3Q9BYR6 98 aa8.05□□□□□ -1.12
CLN3-217ENST00000565354 SNURFQ9Y675 71 aa8.04□□□□□ -1.12
CLN3-217ENST00000565354 DMAC1Q96GE9 116 aa8.02□□□□□ -1.13
CLN3-217ENST00000565354 C20orf197Q8N268 126 aa8.01□□□□□ -1.13
CLN3-217ENST00000565354 NEBP20929 6669 aa7.96□□□□□ -1.14
CLN3-217ENST00000565354 ACYP2P14621 99 aa7.94□□□□□ -1.14
CLN3-217ENST00000565354 COX7CP15954 63 aa7.9□□□□□ -1.14
CLN3-217ENST00000565354 SPANXA2-OT1Q8N9U9 137 aa7.86□□□□□ -1.15
CLN3-217ENST00000565354 H0YAA0 97 aa7.85□□□□□ -1.15
CLN3-217ENST00000565354 CHKB-CPT1BH3BT56 60 aa7.85□□□□□ -1.15
CLN3-217ENST00000565354 MUC12Q9UKN1 5478 aa7.83□□□□□ -1.16
CLN3-217ENST00000565354 ADM2Q7Z4H4 148 aa7.83□□□□□ -1.16
CLN3-217ENST00000565354 ANAPC13Q9BS18 74 aa7.83□□□□□ -1.16
CLN3-217ENST00000565354 SPTSSBQ8NFR3 76 aa7.82□□□□□ -1.16
CLN3-217ENST00000565354 KRTAP20-1Q3LI63 56 aa7.8□□□□□ -1.16
CLN3-217ENST00000565354 CRIPTQ9P021 101 aa7.79□□□□□ -1.16
CLN3-217ENST00000565354 PCP4P48539 62 aa7.77□□□□□ -1.17
CLN3-217ENST00000565354 SPRR2GQ9BYE4 73 aa7.73□□□□□ -1.17
CLN3-217ENST00000565354 Q5VV11 94 aa7.69□□□□□ -1.18
CLN3-217ENST00000565354 H7BZZ5 65 aa7.68□□□□□ -1.18
CLN3-217ENST00000565354 CYSTM1Q9H1C7 97 aa7.66□□□□□ -1.18
CLN3-217ENST00000565354 P0C880 135 aa7.64□□□□□ -1.19
CLN3-217ENST00000565354 COA5Q86WW8 74 aa7.64□□□□□ -1.19
CLN3-217ENST00000565354 KRTAP19-8Q3LI54 63 aa7.63□□□□□ -1.19
CLN3-217ENST00000565354 R4GN34 69 aa7.63□□□□□ -1.19
CLN3-217ENST00000565354 A6NN06 94 aa7.62□□□□□ -1.19
CLN3-217ENST00000565354 CCDC179H3BU77 68 aa7.62□□□□□ -1.19
CLN3-217ENST00000565354 KRTAP3-2Q9BYR7 98 aa7.59□□□□□ -1.19
CLN3-217ENST00000565354 M0QZ58 72 aa7.58□□□□□ -1.2
CLN3-217ENST00000565354 MT1BP07438 61 aa7.58□□□□□ -1.2
CLN3-217ENST00000565354 MDN1Q9NU22 5596 aa7.57□□□□□ -1.2
CLN3-217ENST00000565354 KRTAP5-9P26371 169 aa7.56□□□□□ -1.2
CLN3-217ENST00000565354 KMT2DO14686 5537 aa7.54□□□□□ -1.2
CLN3-217ENST00000565354 ATP5EP56381 51 aaPredicted RBP7.47□□□□□ -1.21
CLN3-217ENST00000565354 SEC61GP60059 68 aa7.47□□□□□ -1.21
CLN3-217ENST00000565354 LINC01554Q52M75 96 aa7.47□□□□□ -1.21
CLN3-217ENST00000565354 KRTAP2-3P0C7H8 128 aa7.46□□□□□ -1.22
CLN3-217ENST00000565354 KRTAP2-4Q9BYR9 128 aa7.46□□□□□ -1.22
CLN3-217ENST00000565354 KRTAP10-5P60370 271 aa7.45□□□□□ -1.22
CLN3-217ENST00000565354 PLAC4Q8WY50 150 aa7.45□□□□□ -1.22
CLN3-217ENST00000565354 SERP1Q9Y6X1 66 aa7.44□□□□□ -1.22
CLN3-217ENST00000565354 TMEM258P61165 79 aa7.38□□□□□ -1.23
CLN3-217ENST00000565354 PRO2289Q9P1D8 64 aa7.3□□□□□ -1.24
CLN3-217ENST00000565354 A0A1B0GU69 56 aa7.29□□□□□ -1.24
CLN3-217ENST00000565354 KRTAP13-4Q3LI77 160 aa7.25□□□□□ -1.25
CLN3-217ENST00000565354 A0A1B0GU33 70 aa7.24□□□□□ -1.25
CLN3-217ENST00000565354 SPRR2EP22531 72 aa7.22□□□□□ -1.25
CLN3-217ENST00000565354 SPRR2BP35325 72 aa7.22□□□□□ -1.25
CLN3-217ENST00000565354 SPRR2AP35326 72 aa7.22□□□□□ -1.25
CLN3-217ENST00000565354 SPRR2FQ96RM1 72 aa7.21□□□□□ -1.26
CLN3-217ENST00000565354 MT1XP80297 61 aa7.19□□□□□ -1.26
CLN3-217ENST00000565354 PRR15LQ9BU68 103 aa7.19□□□□□ -1.26
CLN3-217ENST00000565354 KRTAP2-2Q9BYT5 123 aa7.18□□□□□ -1.26
CLN3-217ENST00000565354 KRTAP2-1Q9BYU5 128 aa7.18□□□□□ -1.26
CLN3-217ENST00000565354 SPATA8Q6RVD6 105 aa7.17□□□□□ -1.26
CLN3-217ENST00000565354 A0A0D9SG42 100 aa7.16□□□□□ -1.26
CLN3-217ENST00000565354 LINC01558Q9Y6Z2 57 aa7.12□□□□□ -1.27
CLN3-217ENST00000565354 CAMK2N1Q7Z7J9 78 aa7.09□□□□□ -1.27
CLN3-217ENST00000565354 SMIM26A0A096LP01 95 aa7.07□□□□□ -1.28
CLN3-217ENST00000565354 LCE1AQ5T7P2 110 aa7.06□□□□□ -1.28
CLN3-217ENST00000565354 SPINT4Q6UDR6 99 aa7.05□□□□□ -1.28
CLN3-217ENST00000565354 KRTAP8-1Q8IUC2 63 aa7□□□□□ -1.29
CLN3-217ENST00000565354 SPRR2DP22532 72 aa6.99□□□□□ -1.29
CLN3-217ENST00000565354 RPS28P62857 69 aaKnown RBP6.98□□□□□ -1.29
CLN3-217ENST00000565354 KRTAP12-2P59991 146 aa6.97□□□□□ -1.29
CLN3-217ENST00000565354 A8MU10 97 aa6.96□□□□□ -1.3
CLN3-217ENST00000565354 KRTAP12-1P59990 96 aa6.95□□□□□ -1.3
CLN3-217ENST00000565354 V9GYY9 64 aa6.95□□□□□ -1.3
CLN3-217ENST00000565354 UQCR11O14957 56 aa6.92□□□□□ -1.3
CLN3-217ENST00000565354 KRTAP10-7P60409 375 aaPredicted RBP6.89□□□□□ -1.31
CLN3-217ENST00000565354 Q1T7F1 81 aa6.86□□□□□ -1.31
CLN3-217ENST00000565354 GPR98Q8WXG9 6306 aa6.86□□□□□ -1.31
CLN3-217ENST00000565354 LCE3BQ5TA77 95 aa6.85□□□□□ -1.31
CLN3-217ENST00000565354 PSPHP1O15172 72 aa6.84□□□□□ -1.31
CLN3-217ENST00000565354 KRTAP10-12P60413 245 aa6.83□□□□□ -1.32
CLN3-217ENST00000565354 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
CLN3-217ENST00000565354 KRTAP4-8A0A0G2JLE6 195 aa6.78□□□□□ -1.32
CLN3-217ENST00000565354 KRTAP4-8Q9BYQ9 185 aa6.78□□□□□ -1.32
CLN3-217ENST00000565354 K7ERS5 55 aa6.67□□□□□ -1.34
CLN3-217ENST00000565354 A6NED7 52 aa6.66□□□□□ -1.34
CLN3-217ENST00000565354 C10orf95Q9H7T3 257 aa6.61□□□□□ -1.35
CLN3-217ENST00000565354 DSTQ03001 7570 aaKnown RBP6.6□□□□□ -1.35
CLN3-217ENST00000565354 TNP1P09430 55 aa6.6□□□□□ -1.35
CLN3-217ENST00000565354 KRTAP4-9Q9BYQ8 210 aa6.51□□□□□ -1.37
CLN3-217ENST00000565354 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 145.8 ms