RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 F8W1H4 67 aa7.4□□□□□ -1.22
CLN3-216ENST00000565316 TRAV22A0A0B4J277 110 aa7.38□□□□□ -1.23
CLN3-216ENST00000565316 LOC101927531A0A1B0GV80 90 aa7.38□□□□□ -1.23
CLN3-216ENST00000565316 IMUPQ9GZP8 106 aa7.38□□□□□ -1.23
CLN3-216ENST00000565316 GTF2H5Q6ZYL4 71 aa7.37□□□□□ -1.23
CLN3-216ENST00000565316 H0YAA0 97 aa7.35□□□□□ -1.23
CLN3-216ENST00000565316 NDUFC1O43677 76 aa7.3□□□□□ -1.24
CLN3-216ENST00000565316 PCP4L1A6NKN8 68 aa7.29□□□□□ -1.24
CLN3-216ENST00000565316 UQCRQO14949 82 aa7.26□□□□□ -1.25
CLN3-216ENST00000565316 ATOX1O00244 68 aa7.24□□□□□ -1.25
CLN3-216ENST00000565316 H0Y9P7 68 aa7.23□□□□□ -1.25
CLN3-216ENST00000565316 KRTAP2-3P0C7H8 128 aa7.23□□□□□ -1.25
CLN3-216ENST00000565316 ADM2Q7Z4H4 148 aa7.23□□□□□ -1.25
CLN3-216ENST00000565316 KRTAP2-4Q9BYR9 128 aa7.23□□□□□ -1.25
CLN3-216ENST00000565316 A8MUN3 132 aa7.22□□□□□ -1.25
CLN3-216ENST00000565316 ACYP1P07311 99 aa7.21□□□□□ -1.26
CLN3-216ENST00000565316 MT1XP80297 61 aa7.21□□□□□ -1.26
CLN3-216ENST00000565316 PRO2289Q9P1D8 64 aa7.21□□□□□ -1.26
CLN3-216ENST00000565316 ATP5EP2Q5VTU8 51 aa7.2□□□□□ -1.26
CLN3-216ENST00000565316 SPRR2FQ96RM1 72 aa7.19□□□□□ -1.26
CLN3-216ENST00000565316 FAM240AA0A1B0GVK7 77 aa7.18□□□□□ -1.26
CLN3-216ENST00000565316 HIST1H4AP62805 103 aaKnown RBP7.15□□□□□ -1.26
CLN3-216ENST00000565316 SPRR2EP22531 72 aa7.14□□□□□ -1.27
CLN3-216ENST00000565316 SPRR2BP35325 72 aa7.14□□□□□ -1.27
CLN3-216ENST00000565316 SPRR2AP35326 72 aa7.14□□□□□ -1.27
CLN3-216ENST00000565316 PLAC4Q8WY50 150 aa7.13□□□□□ -1.27
CLN3-216ENST00000565316 KRTAP12-2P59991 146 aa7.1□□□□□ -1.27
CLN3-216ENST00000565316 KRTAP8-1Q8IUC2 63 aa7.09□□□□□ -1.27
CLN3-216ENST00000565316 LINC00208Q96KT6 92 aa7.08□□□□□ -1.28
CLN3-216ENST00000565316 LCE1AQ5T7P2 110 aa7.05□□□□□ -1.28
CLN3-216ENST00000565316 P0C880 135 aa7.04□□□□□ -1.28
CLN3-216ENST00000565316 R4GN34 69 aa7.04□□□□□ -1.28
CLN3-216ENST00000565316 LINC00643Q86TS7 51 aa7.03□□□□□ -1.28
CLN3-216ENST00000565316 C20orf197Q8N268 126 aa7.01□□□□□ -1.29
CLN3-216ENST00000565316 OCR1Q9BZK8 76 aa7.01□□□□□ -1.29
CLN3-216ENST00000565316 MP68P56378 58 aa7.01□□□□□ -1.29
CLN3-216ENST00000565316 M0QZ58 72 aa6.98□□□□□ -1.29
CLN3-216ENST00000565316 KRTAP3-2Q9BYR7 98 aa6.98□□□□□ -1.29
CLN3-216ENST00000565316 KRTAP2-2Q9BYT5 123 aa6.98□□□□□ -1.29
CLN3-216ENST00000565316 KRTAP2-1Q9BYU5 128 aa6.98□□□□□ -1.29
CLN3-216ENST00000565316 KRTAP4-8A0A0G2JLE6 195 aa6.95□□□□□ -1.3
CLN3-216ENST00000565316 KRTAP4-8Q9BYQ9 185 aa6.95□□□□□ -1.3
CLN3-216ENST00000565316 A0A1B0GV90 55 aa6.94□□□□□ -1.3
CLN3-216ENST00000565316 DMAC1Q96GE9 116 aa6.93□□□□□ -1.3
CLN3-216ENST00000565316 SPRR2DP22532 72 aa6.91□□□□□ -1.3
CLN3-216ENST00000565316 H3BPC8 53 aa6.9□□□□□ -1.3
CLN3-216ENST00000565316 LINC01554Q52M75 96 aa6.87□□□□□ -1.31
CLN3-216ENST00000565316 KRTAP10-7P60409 375 aaPredicted RBP6.86□□□□□ -1.31
CLN3-216ENST00000565316 KRTAP10-12P60413 245 aa6.85□□□□□ -1.31
CLN3-216ENST00000565316 TRAV7A0A075B6U4 112 aa6.77□□□□□ -1.32
CLN3-216ENST00000565316 LCE3BQ5TA77 95 aa6.75□□□□□ -1.33
CLN3-216ENST00000565316 SCGB1A1P11684 91 aa6.72□□□□□ -1.33
CLN3-216ENST00000565316 ACYP2P14621 99 aa6.7□□□□□ -1.34
CLN3-216ENST00000565316 J3QR89 54 aa6.69□□□□□ -1.34
CLN3-216ENST00000565316 MT-ATP8P03928 68 aa6.69□□□□□ -1.34
CLN3-216ENST00000565316 SPTSSBQ8NFR3 76 aa6.65□□□□□ -1.35
CLN3-216ENST00000565316 CHKB-CPT1BH3BT56 60 aa6.53□□□□□ -1.36
CLN3-216ENST00000565316 SMIM20Q8N5G0 67 aa6.5□□□□□ -1.37
CLN3-216ENST00000565316 KRTAP13-4Q3LI77 160 aa6.49□□□□□ -1.37
CLN3-216ENST00000565316 GPR98Q8WXG9 6306 aa6.48□□□□□ -1.37
CLN3-216ENST00000565316 DSTQ03001 7570 aaKnown RBP6.47□□□□□ -1.37
CLN3-216ENST00000565316 LCE5AQ5TCM9 118 aa6.47□□□□□ -1.37
CLN3-216ENST00000565316 KRTAP19-7Q3SYF9 63 aa6.46□□□□□ -1.38
CLN3-216ENST00000565316 SNURFQ9Y675 71 aa6.44□□□□□ -1.38
CLN3-216ENST00000565316 CAMK2N1Q7Z7J9 78 aa6.43□□□□□ -1.38
CLN3-216ENST00000565316 K7ERU9 68 aa6.42□□□□□ -1.38
CLN3-216ENST00000565316 MT1EP04732 61 aa6.41□□□□□ -1.38
CLN3-216ENST00000565316 KRTAP19-3Q7Z4W3 81 aa6.39□□□□□ -1.39
CLN3-216ENST00000565316 SPANXA2-OT1Q8N9U9 137 aa6.39□□□□□ -1.39
CLN3-216ENST00000565316 KRTAP4-9Q9BYQ8 210 aa6.33□□□□□ -1.4
CLN3-216ENST00000565316 SERP2Q8N6R1 65 aa6.28□□□□□ -1.4
CLN3-216ENST00000565316 CYSTM1Q9H1C7 97 aa6.24□□□□□ -1.41
CLN3-216ENST00000565316 A0A0D9SG42 100 aa6.23□□□□□ -1.41
CLN3-216ENST00000565316 MT1GP13640 62 aa6.23□□□□□ -1.41
CLN3-216ENST00000565316 KRTAP19-5Q3LI72 72 aa6.21□□□□□ -1.42
CLN3-216ENST00000565316 COA5Q86WW8 74 aa6.2□□□□□ -1.42
CLN3-216ENST00000565316 LCE1DQ5T752 114 aa6.18□□□□□ -1.42
CLN3-216ENST00000565316 SEC61GP60059 68 aa6.17□□□□□ -1.42
CLN3-216ENST00000565316 SPATA8Q6RVD6 105 aa6.17□□□□□ -1.42
CLN3-216ENST00000565316 HMCN1Q96RW7 5635 aa6.16□□□□□ -1.42
CLN3-216ENST00000565316 SERP1Q9Y6X1 66 aa6.16□□□□□ -1.42
CLN3-216ENST00000565316 SPINT4Q6UDR6 99 aa6.14□□□□□ -1.43
CLN3-216ENST00000565316 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
CLN3-216ENST00000565316 KRTAP12-1P59990 96 aa6.13□□□□□ -1.43
CLN3-216ENST00000565316 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
CLN3-216ENST00000565316 A0A1B0GU33 70 aa6.11□□□□□ -1.43
CLN3-216ENST00000565316 MT1MQ8N339 61 aa6.11□□□□□ -1.43
CLN3-216ENST00000565316 MT1LQ93083 61 aa6.08□□□□□ -1.44
CLN3-216ENST00000565316 COX7CP15954 63 aa6.07□□□□□ -1.44
CLN3-216ENST00000565316 H7BZZ5 65 aa6.06□□□□□ -1.44
CLN3-216ENST00000565316 MT4P47944 62 aa6.04□□□□□ -1.44
CLN3-216ENST00000565316 AHNAK2Q8IVF2 5795 aa6.01□□□□□ -1.45
CLN3-216ENST00000565316 KRTAP5-4Q6L8H1 288 aa5.99□□□□□ -1.45
CLN3-216ENST00000565316 SVIPQ8NHG7 77 aa5.99□□□□□ -1.45
CLN3-216ENST00000565316 KRTAP4-3Q9BYR4 195 aa5.96□□□□□ -1.46
CLN3-216ENST00000565316 SMIM26A0A096LP01 95 aa5.95□□□□□ -1.46
CLN3-216ENST00000565316 C10orf95Q9H7T3 257 aa5.95□□□□□ -1.46
CLN3-216ENST00000565316 LCE3AQ5TA76 89 aa5.94□□□□□ -1.46
CLN3-216ENST00000565316 A8MU10 97 aa5.89□□□□□ -1.47
CLN3-216ENST00000565316 TNP1P09430 55 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms