RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 COA5Q86WW8 74 aa1.69□□□□□ -2.14
LINC00560-201ENST00000564593 WFDC13Q8IUB5 93 aa1.69□□□□□ -2.14
LINC00560-201ENST00000564593 RETNLBQ9BQ08 111 aa1.69□□□□□ -2.14
LINC00560-201ENST00000564593 LIMD2Q9BT23 127 aa1.69□□□□□ -2.14
LINC00560-201ENST00000564593 LINC00208Q96KT6 92 aa1.68□□□□□ -2.14
LINC00560-201ENST00000564593 ANK3Q12955 4377 aaKnown RBP1.68□□□□□ -2.14
LINC00560-201ENST00000564593 RYR1P21817 5038 aa1.68□□□□□ -2.14
LINC00560-201ENST00000564593 LOC101927531A0A1B0GV80 90 aa1.68□□□□□ -2.14
LINC00560-201ENST00000564593 LINC00472Q9H8W2 130 aa1.68□□□□□ -2.14
LINC00560-201ENST00000564593 CUBNO60494 3623 aa1.67□□□□□ -2.14
LINC00560-201ENST00000564593 A0A087WTM6 91 aa1.67□□□□□ -2.14
LINC00560-201ENST00000564593 C1orf134Q5TEV5 83 aa1.67□□□□□ -2.14
LINC00560-201ENST00000564593 FP248Q71RG6 208 aaPredicted RBP1.67□□□□□ -2.14
LINC00560-201ENST00000564593 PLAC8Q9NZF1 115 aa1.67□□□□□ -2.14
LINC00560-201ENST00000564593 KMT2CQ8NEZ4 4911 aaKnown RBP1.66□□□□□ -2.14
LINC00560-201ENST00000564593 MMP24-AS1A0A0U1RRL7 71 aa1.66□□□□□ -2.14
LINC00560-201ENST00000564593 ASB16-AS1Q495Z4 193 aa1.66□□□□□ -2.14
LINC00560-201ENST00000564593 SSBP3-AS1Q7Z2R9 100 aa1.66□□□□□ -2.14
LINC00560-201ENST00000564593 MRPL34Q9BQ48 92 aaKnown RBP1.66□□□□□ -2.14
LINC00560-201ENST00000564593 PRR15LQ9BU68 103 aa1.66□□□□□ -2.14
LINC00560-201ENST00000564593 KIAA1109Q2LD37 5005 aa1.66□□□□□ -2.14
LINC00560-201ENST00000564593 EPPK1P58107 5090 aaKnown RBP1.65□□□□□ -2.15
LINC00560-201ENST00000564593 TGP01266 2768 aa1.65□□□□□ -2.15
LINC00560-201ENST00000564593 A6NN06 94 aa1.64□□□□□ -2.15
LINC00560-201ENST00000564593 TRRAPQ9Y4A5 3859 aa1.64□□□□□ -2.15
LINC00560-201ENST00000564593 CHKB-CPT1BH3BT56 60 aa1.64□□□□□ -2.15
LINC00560-201ENST00000564593 ACYP2P14621 99 aa1.64□□□□□ -2.15
LINC00560-201ENST00000564593 CRCT1Q9UGL9 99 aa1.64□□□□□ -2.15
LINC00560-201ENST00000564593 COL7A1Q02388 2944 aa1.63□□□□□ -2.15
LINC00560-201ENST00000564593 TENM2Q9NT68 2774 aa1.63□□□□□ -2.15
LINC00560-201ENST00000564593 LY6G6CO95867 125 aa1.62□□□□□ -2.15
LINC00560-201ENST00000564593 RPS29P62273 56 aaKnown RBP1.62□□□□□ -2.15
LINC00560-201ENST00000564593 ATP11AUNQ6ZP68 121 aa1.62□□□□□ -2.15
LINC00560-201ENST00000564593 SPTSSBQ8NFR3 76 aa1.62□□□□□ -2.15
LINC00560-201ENST00000564593 Q96NJ1 140 aa1.62□□□□□ -2.15
LINC00560-201ENST00000564593 DNAH3Q8TD57 4116 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 SPINK1P00995 79 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 SPAG11AQ6PDA7 123 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 SPINK6Q6UWN8 80 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 LINC01558Q9Y6Z2 57 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 RYR2Q92736 4967 aa1.61□□□□□ -2.15
LINC00560-201ENST00000564593 MEGF8Q7Z7M0 2845 aa1.6□□□□□ -2.15
LINC00560-201ENST00000564593 DMAC1Q96GE9 116 aa1.6□□□□□ -2.15
LINC00560-201ENST00000564593 CDC42SE1Q9NRR8 79 aa1.6□□□□□ -2.15
LINC00560-201ENST00000564593 Q5VV11 94 aa1.59□□□□□ -2.15
LINC00560-201ENST00000564593 Q6ZSA8 131 aa1.59□□□□□ -2.15
LINC00560-201ENST00000564593 KRTAP4-1Q9BYQ7 146 aa1.59□□□□□ -2.15
LINC00560-201ENST00000564593 ANK2Q01484 3957 aa1.59□□□□□ -2.15
LINC00560-201ENST00000564593 SRRM2Q9UQ35 2752 aaKnown RBP1.59□□□□□ -2.16
LINC00560-201ENST00000564593 A0A1B0GU69 56 aa1.59□□□□□ -2.16
LINC00560-201ENST00000564593 HERC2O95714 4834 aa1.58□□□□□ -2.16
LINC00560-201ENST00000564593 MUC2Q02817 5179 aa1.58□□□□□ -2.16
LINC00560-201ENST00000564593 UQCR11O14957 56 aa1.57□□□□□ -2.16
LINC00560-201ENST00000564593 MIR22HGQ0VDD5 57 aa1.55□□□□□ -2.16
LINC00560-201ENST00000564593 CMYA5Q8N3K9 4069 aa1.55□□□□□ -2.16
LINC00560-201ENST00000564593 HUWE1Q7Z6Z7 4374 aaKnown RBP1.55□□□□□ -2.16
LINC00560-201ENST00000564593 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.16
LINC00560-201ENST00000564593 DYNC2H1Q8NCM8 4307 aaKnown RBP1.53□□□□□ -2.16
LINC00560-201ENST00000564593 DNAH1Q9P2D7 4330 aa1.53□□□□□ -2.16
LINC00560-201ENST00000564593 SPATA8Q6RVD6 105 aa1.52□□□□□ -2.17
LINC00560-201ENST00000564593 SPINK7P58062 85 aa1.51□□□□□ -2.17
LINC00560-201ENST00000564593 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
LINC00560-201ENST00000564593 DNAH7Q8WXX0 4024 aa1.51□□□□□ -2.17
LINC00560-201ENST00000564593 HECTD4Q9Y4D8 3996 aa1.5□□□□□ -2.17
LINC00560-201ENST00000564593 LYSTQ99698 3801 aa1.5□□□□□ -2.17
LINC00560-201ENST00000564593 VPS13DQ5THJ4 4388 aa1.5□□□□□ -2.17
LINC00560-201ENST00000564593 DNAH6Q9C0G6 4158 aa1.49□□□□□ -2.17
LINC00560-201ENST00000564593 DNAH10Q8IVF4 4471 aa1.49□□□□□ -2.17
LINC00560-201ENST00000564593 ALMS1Q8TCU4 4167 aa1.49□□□□□ -2.17
LINC00560-201ENST00000564593 PRKDCP78527 4128 aaKnown RBP1.49□□□□□ -2.17
LINC00560-201ENST00000564593 COX6B2Q6YFQ2 88 aa1.48□□□□□ -2.17
LINC00560-201ENST00000564593 ABCA13Q86UQ4 5058 aa1.48□□□□□ -2.17
LINC00560-201ENST00000564593 STARD9Q9P2P6 4700 aa1.48□□□□□ -2.17
LINC00560-201ENST00000564593 PLECQ15149 4684 aaKnown RBP1.47□□□□□ -2.17
LINC00560-201ENST00000564593 C9orf92A6NGG3 77 aa1.47□□□□□ -2.17
LINC00560-201ENST00000564593 H1FX-AS1Q4G0G2 97 aa1.47□□□□□ -2.17
LINC00560-201ENST00000564593 HERC1Q15751 4861 aa1.47□□□□□ -2.17
LINC00560-201ENST00000564593 DNAH17Q9UFH2 4485 aa1.46□□□□□ -2.17
LINC00560-201ENST00000564593 CSAG1Q6PB30 78 aa1.46□□□□□ -2.18
LINC00560-201ENST00000564593 FLG2Q5D862 2391 aaPredicted RBP1.46□□□□□ -2.18
LINC00560-201ENST00000564593 SMR3BP02814 79 aaPredicted RBP1.45□□□□□ -2.18
LINC00560-201ENST00000564593 RPL37P61927 97 aaKnown RBP1.45□□□□□ -2.18
LINC00560-201ENST00000564593 Q5VSD8 79 aa1.44□□□□□ -2.18
LINC00560-201ENST00000564593 S4R3F8 94 aa1.44□□□□□ -2.18
LINC00560-201ENST00000564593 KMT2AQ03164 3969 aa1.44□□□□□ -2.18
LINC00560-201ENST00000564593 H0YAA0 97 aa1.43□□□□□ -2.18
LINC00560-201ENST00000564593 INE1O15225 51 aa1.43□□□□□ -2.18
LINC00560-201ENST00000564593 KRTAP10-4P60372 401 aaPredicted RBP1.43□□□□□ -2.18
LINC00560-201ENST00000564593 DMBT1Q9UGM3 2413 aaPredicted RBP1.43□□□□□ -2.18
LINC00560-201ENST00000564593 FRAS1Q86XX4 4008 aa1.43□□□□□ -2.18
LINC00560-201ENST00000564593 DNAH8Q96JB1 4490 aa1.42□□□□□ -2.18
LINC00560-201ENST00000564593 DNAH2Q9P225 4427 aa1.42□□□□□ -2.18
LINC00560-201ENST00000564593 M0QZ58 72 aa1.41□□□□□ -2.18
LINC00560-201ENST00000564593 PKD1P98161 4303 aa1.41□□□□□ -2.18
LINC00560-201ENST00000564593 FCGBPQ9Y6R7 5405 aaPredicted RBP1.41□□□□□ -2.18
LINC00560-201ENST00000564593 FAT4Q6V0I7 4981 aa1.4□□□□□ -2.18
LINC00560-201ENST00000564593 VPS13BQ7Z7G8 4022 aa1.4□□□□□ -2.19
LINC00560-201ENST00000564593 FSIP2Q5CZC0 6907 aa1.4□□□□□ -2.19
LINC00560-201ENST00000564593 CRIPTQ9P021 101 aa1.39□□□□□ -2.19
LINC00560-201ENST00000564593 DNAH5Q8TE73 4624 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms