RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SPRR2FQ96RM1 72 aa7.18□□□□□ -1.26
CLN3-211ENST00000564091 K7EP34 96 aa7.15□□□□□ -1.26
CLN3-211ENST00000564091 SPRR2EP22531 72 aa7.14□□□□□ -1.27
CLN3-211ENST00000564091 SPRR2BP35325 72 aa7.14□□□□□ -1.27
CLN3-211ENST00000564091 SPRR2AP35326 72 aa7.14□□□□□ -1.27
CLN3-211ENST00000564091 LOC101927531A0A1B0GV80 90 aa7.12□□□□□ -1.27
CLN3-211ENST00000564091 NDUFC1O43677 76 aa7.12□□□□□ -1.27
CLN3-211ENST00000564091 TRAV22A0A0B4J277 110 aa7.11□□□□□ -1.27
CLN3-211ENST00000564091 H0YAA0 97 aa7.1□□□□□ -1.27
CLN3-211ENST00000564091 MT1XP80297 61 aa7.09□□□□□ -1.27
CLN3-211ENST00000564091 ADM2Q7Z4H4 148 aa7.08□□□□□ -1.28
CLN3-211ENST00000564091 PRO2289Q9P1D8 64 aa7.08□□□□□ -1.28
CLN3-211ENST00000564091 A8MUN3 132 aa7.07□□□□□ -1.28
CLN3-211ENST00000564091 COL5A1-AS1Q5SY13 56 aa7.07□□□□□ -1.28
CLN3-211ENST00000564091 LOC105371267A0A1B0GV96 52 aa7.05□□□□□ -1.28
CLN3-211ENST00000564091 KRTAP8-1Q8IUC2 63 aa7.04□□□□□ -1.28
CLN3-211ENST00000564091 ETDBQ3ZM63 59 aa7.02□□□□□ -1.29
CLN3-211ENST00000564091 LCE1AQ5T7P2 110 aa7.01□□□□□ -1.29
CLN3-211ENST00000564091 PLAC4Q8WY50 150 aa7.01□□□□□ -1.29
CLN3-211ENST00000564091 ACYP1P07311 99 aa6.99□□□□□ -1.29
CLN3-211ENST00000564091 H0Y9P7 68 aa6.98□□□□□ -1.29
CLN3-211ENST00000564091 KRTAP2-2Q9BYT5 123 aa6.98□□□□□ -1.29
CLN3-211ENST00000564091 KRTAP2-1Q9BYU5 128 aa6.98□□□□□ -1.29
CLN3-211ENST00000564091 UQCRQO14949 82 aa6.97□□□□□ -1.29
CLN3-211ENST00000564091 F8W1H4 67 aa6.96□□□□□ -1.3
CLN3-211ENST00000564091 GTF2H5Q6ZYL4 71 aa6.96□□□□□ -1.3
CLN3-211ENST00000564091 ATOX1O00244 68 aa6.95□□□□□ -1.3
CLN3-211ENST00000564091 KRTAP12-2P59991 146 aa6.94□□□□□ -1.3
CLN3-211ENST00000564091 KRTAP4-8A0A0G2JLE6 195 aa6.93□□□□□ -1.3
CLN3-211ENST00000564091 KRTAP4-8Q9BYQ9 185 aa6.93□□□□□ -1.3
CLN3-211ENST00000564091 HIST1H4AP62805 103 aaKnown RBP6.91□□□□□ -1.3
CLN3-211ENST00000564091 SPRR2DP22532 72 aa6.9□□□□□ -1.3
CLN3-211ENST00000564091 R4GN34 69 aa6.9□□□□□ -1.3
CLN3-211ENST00000564091 P0C880 135 aa6.89□□□□□ -1.31
CLN3-211ENST00000564091 M0QZ58 72 aa6.85□□□□□ -1.31
CLN3-211ENST00000564091 LINC00208Q96KT6 92 aa6.85□□□□□ -1.31
CLN3-211ENST00000564091 ATP5EP2Q5VTU8 51 aa6.84□□□□□ -1.31
CLN3-211ENST00000564091 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
CLN3-211ENST00000564091 C20orf197Q8N268 126 aa6.8□□□□□ -1.32
CLN3-211ENST00000564091 KRTAP10-7P60409 375 aaPredicted RBP6.78□□□□□ -1.32
CLN3-211ENST00000564091 FAM240AA0A1B0GVK7 77 aa6.77□□□□□ -1.33
CLN3-211ENST00000564091 KRTAP3-2Q9BYR7 98 aa6.77□□□□□ -1.33
CLN3-211ENST00000564091 MP68P56378 58 aa6.74□□□□□ -1.33
CLN3-211ENST00000564091 LCE3BQ5TA77 95 aa6.74□□□□□ -1.33
CLN3-211ENST00000564091 KRTAP10-12P60413 245 aa6.72□□□□□ -1.33
CLN3-211ENST00000564091 GPR98Q8WXG9 6306 aa6.71□□□□□ -1.33
CLN3-211ENST00000564091 OCR1Q9BZK8 76 aa6.71□□□□□ -1.34
CLN3-211ENST00000564091 PCP4L1A6NKN8 68 aa6.69□□□□□ -1.34
CLN3-211ENST00000564091 LINC00643Q86TS7 51 aa6.68□□□□□ -1.34
CLN3-211ENST00000564091 DMAC1Q96GE9 116 aa6.66□□□□□ -1.34
CLN3-211ENST00000564091 DSTQ03001 7570 aaKnown RBP6.63□□□□□ -1.35
CLN3-211ENST00000564091 H3BPC8 53 aa6.57□□□□□ -1.36
CLN3-211ENST00000564091 MT-ATP8P03928 68 aa6.56□□□□□ -1.36
CLN3-211ENST00000564091 TRAV7A0A075B6U4 112 aa6.49□□□□□ -1.37
CLN3-211ENST00000564091 SCGB1A1P11684 91 aa6.46□□□□□ -1.38
CLN3-211ENST00000564091 ACYP2P14621 99 aa6.44□□□□□ -1.38
CLN3-211ENST00000564091 SPTSSBQ8NFR3 76 aa6.4□□□□□ -1.38
CLN3-211ENST00000564091 KRTAP4-9Q9BYQ8 210 aa6.4□□□□□ -1.38
CLN3-211ENST00000564091 LCE5AQ5TCM9 118 aa6.36□□□□□ -1.39
CLN3-211ENST00000564091 KRTAP19-7Q3SYF9 63 aa6.35□□□□□ -1.39
CLN3-211ENST00000564091 CHKB-CPT1BH3BT56 60 aa6.33□□□□□ -1.4
CLN3-211ENST00000564091 A0A1B0GV90 55 aa6.32□□□□□ -1.4
CLN3-211ENST00000564091 MT1EP04732 61 aa6.31□□□□□ -1.4
CLN3-211ENST00000564091 KRTAP13-4Q3LI77 160 aa6.31□□□□□ -1.4
CLN3-211ENST00000564091 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
CLN3-211ENST00000564091 KRTAP19-3Q7Z4W3 81 aa6.3□□□□□ -1.4
CLN3-211ENST00000564091 J3QR89 54 aa6.24□□□□□ -1.41
CLN3-211ENST00000564091 HMCN1Q96RW7 5635 aa6.22□□□□□ -1.41
CLN3-211ENST00000564091 LCE1DQ5T752 114 aa6.18□□□□□ -1.42
CLN3-211ENST00000564091 CYSTM1Q9H1C7 97 aa6.18□□□□□ -1.42
CLN3-211ENST00000564091 SNURFQ9Y675 71 aa6.15□□□□□ -1.42
CLN3-211ENST00000564091 SMIM20Q8N5G0 67 aa6.14□□□□□ -1.43
CLN3-211ENST00000564091 A0A0D9SG42 100 aa6.12□□□□□ -1.43
CLN3-211ENST00000564091 KRTAP19-5Q3LI72 72 aa6.12□□□□□ -1.43
CLN3-211ENST00000564091 AHNAK2Q8IVF2 5795 aa6.11□□□□□ -1.43
CLN3-211ENST00000564091 MT1GP13640 62 aa6.11□□□□□ -1.43
CLN3-211ENST00000564091 MT4P47944 62 aa6.09□□□□□ -1.43
CLN3-211ENST00000564091 LCE4AQ5TA78 99 aa6.06□□□□□ -1.44
CLN3-211ENST00000564091 SPANXA2-OT1Q8N9U9 137 aa6.06□□□□□ -1.44
CLN3-211ENST00000564091 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
CLN3-211ENST00000564091 SPINT4Q6UDR6 99 aa6.02□□□□□ -1.45
CLN3-211ENST00000564091 MT1MQ8N339 61 aa6.02□□□□□ -1.45
CLN3-211ENST00000564091 SPATA8Q6RVD6 105 aa6.01□□□□□ -1.45
CLN3-211ENST00000564091 K7ERU9 68 aa5.98□□□□□ -1.45
CLN3-211ENST00000564091 MT1LQ93083 61 aa5.97□□□□□ -1.45
CLN3-211ENST00000564091 COA5Q86WW8 74 aa5.95□□□□□ -1.46
CLN3-211ENST00000564091 SERP1Q9Y6X1 66 aa5.95□□□□□ -1.46
CLN3-211ENST00000564091 SEC61GP60059 68 aa5.94□□□□□ -1.46
CLN3-211ENST00000564091 SVIPQ8NHG7 77 aa5.94□□□□□ -1.46
CLN3-211ENST00000564091 KRTAP4-3Q9BYR4 195 aa5.94□□□□□ -1.46
CLN3-211ENST00000564091 KRTAP12-1P59990 96 aa5.93□□□□□ -1.46
CLN3-211ENST00000564091 PCP4P48539 62 aa5.92□□□□□ -1.46
CLN3-211ENST00000564091 KRTAP5-4Q6L8H1 288 aa5.9□□□□□ -1.46
CLN3-211ENST00000564091 A0A1B0GU33 70 aa5.89□□□□□ -1.47
CLN3-211ENST00000564091 KRTAP4-6Q9BYQ5 205 aa5.89□□□□□ -1.47
CLN3-211ENST00000564091 KRTAP5-10Q6L8G5 202 aa5.88□□□□□ -1.47
CLN3-211ENST00000564091 SERP2Q8N6R1 65 aa5.86□□□□□ -1.47
CLN3-211ENST00000564091 LCE3AQ5TA76 89 aa5.83□□□□□ -1.48
CLN3-211ENST00000564091 C10orf95Q9H7T3 257 aa5.83□□□□□ -1.48
CLN3-211ENST00000564091 A8MU10 97 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms