RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KRTAP4-1Q9BYQ7 146 aa10.86□□□□□ -0.67
CLN3-209ENST00000561689 LINC01558Q9Y6Z2 57 aa10.84□□□□□ -0.67
CLN3-209ENST00000561689 MUC17Q685J3 4493 aa10.83□□□□□ -0.68
CLN3-209ENST00000561689 CHKB-CPT1BH3BT56 60 aa10.81□□□□□ -0.68
CLN3-209ENST00000561689 MUC2Q02817 5179 aa10.74□□□□□ -0.69
CLN3-209ENST00000561689 RBM12B-AS1Q9P1G2 102 aa10.74□□□□□ -0.69
CLN3-209ENST00000561689 A8MU10 97 aa10.72□□□□□ -0.69
CLN3-209ENST00000561689 UBR4Q5T4S7 5183 aa10.66□□□□□ -0.7
CLN3-209ENST00000561689 H1FX-AS1Q4G0G2 97 aa10.64□□□□□ -0.71
CLN3-209ENST00000561689 A6NED7 52 aa10.63□□□□□ -0.71
CLN3-209ENST00000561689 LCA10Q71F78 164 aa10.6□□□□□ -0.71
CLN3-209ENST00000561689 S4R3F8 94 aa10.57□□□□□ -0.72
CLN3-209ENST00000561689 RNF213Q63HN8 5207 aa10.53□□□□□ -0.72
CLN3-209ENST00000561689 A0A1B0GU69 56 aa10.52□□□□□ -0.72
CLN3-209ENST00000561689 SPTSSBQ8NFR3 76 aa10.52□□□□□ -0.72
CLN3-209ENST00000561689 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.72
CLN3-209ENST00000561689 KRTAP19-2Q3LHN2 52 aa10.52□□□□□ -0.73
CLN3-209ENST00000561689 PMAIP1Q13794 54 aa10.49□□□□□ -0.73
CLN3-209ENST00000561689 CDC42SE1Q9NRR8 79 aa10.48□□□□□ -0.73
CLN3-209ENST00000561689 SEC61GP60059 68 aa10.4□□□□□ -0.74
CLN3-209ENST00000561689 CSAG1Q6PB30 78 aa10.32□□□□□ -0.76
CLN3-209ENST00000561689 FLGP20930 4061 aaPredicted RBP10.29□□□□□ -0.76
CLN3-209ENST00000561689 LCE2CQ5TA81 110 aa10.29□□□□□ -0.76
CLN3-209ENST00000561689 UQCR11O14957 56 aa10.26□□□□□ -0.77
CLN3-209ENST00000561689 SPATA8Q6RVD6 105 aa10.26□□□□□ -0.77
CLN3-209ENST00000561689 FAT4Q6V0I7 4981 aa10.26□□□□□ -0.77
CLN3-209ENST00000561689 MIR22HGQ0VDD5 57 aa10.23□□□□□ -0.77
CLN3-209ENST00000561689 KTN1-AS1Q86SY8 53 aa10.21□□□□□ -0.78
CLN3-209ENST00000561689 A6NN06 94 aa10.2□□□□□ -0.78
CLN3-209ENST00000561689 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
CLN3-209ENST00000561689 ADM2Q7Z4H4 148 aa10.14□□□□□ -0.79
CLN3-209ENST00000561689 KRTAP10-6P60371 365 aaPredicted RBP10.12□□□□□ -0.79
CLN3-209ENST00000561689 MT1HP80294 61 aa10.09□□□□□ -0.79
CLN3-209ENST00000561689 P0C880 135 aa10.08□□□□□ -0.8
CLN3-209ENST00000561689 A0A1B0GU33 70 aa10.07□□□□□ -0.8
CLN3-209ENST00000561689 H0YAA0 97 aa10.07□□□□□ -0.8
CLN3-209ENST00000561689 M0R2T5 61 aa10.03□□□□□ -0.8
CLN3-209ENST00000561689 KRTAP13-4Q3LI77 160 aa9.88□□□□□ -0.83
CLN3-209ENST00000561689 LORP23490 312 aaPredicted RBP9.84□□□□□ -0.83
CLN3-209ENST00000561689 R4GN34 69 aa9.75□□□□□ -0.85
CLN3-209ENST00000561689 M0QZ58 72 aa9.75□□□□□ -0.85
CLN3-209ENST00000561689 PRAC1Q96KF2 57 aa9.73□□□□□ -0.85
CLN3-209ENST00000561689 A0A0D9SG42 100 aa9.72□□□□□ -0.85
CLN3-209ENST00000561689 KRTAP9-8Q9BYQ0 159 aa9.71□□□□□ -0.86
CLN3-209ENST00000561689 MT2AP02795 61 aa9.68□□□□□ -0.86
CLN3-209ENST00000561689 LCE2AQ5TA79 106 aaPredicted RBP9.67□□□□□ -0.86
CLN3-209ENST00000561689 MT1FP04733 61 aa9.64□□□□□ -0.87
CLN3-209ENST00000561689 LINC01554Q52M75 96 aa9.63□□□□□ -0.87
CLN3-209ENST00000561689 KRTAP10-10P60014 251 aa9.63□□□□□ -0.87
CLN3-209ENST00000561689 CRIPTQ9P021 101 aa9.61□□□□□ -0.87
CLN3-209ENST00000561689 K7ERS5 55 aa9.56□□□□□ -0.88
CLN3-209ENST00000561689 KRTAP12-2P59991 146 aa9.48□□□□□ -0.89
CLN3-209ENST00000561689 SPINT4Q6UDR6 99 aa9.48□□□□□ -0.89
CLN3-209ENST00000561689 KRTAP12-1P59990 96 aa9.47□□□□□ -0.89
CLN3-209ENST00000561689 KRTAP19-1Q8IUB9 90 aa9.46□□□□□ -0.9
CLN3-209ENST00000561689 SPRR2GQ9BYE4 73 aa9.45□□□□□ -0.9
CLN3-209ENST00000561689 KRTAP9-3Q9BYQ3 159 aa9.35□□□□□ -0.91
CLN3-209ENST00000561689 ROMO1P60602 79 aa9.35□□□□□ -0.91
CLN3-209ENST00000561689 KRTAP25-1Q3LHN0 102 aa9.26□□□□□ -0.93
CLN3-209ENST00000561689 KRTAP19-8Q3LI54 63 aa9.19□□□□□ -0.94
CLN3-209ENST00000561689 PLAC4Q8WY50 150 aa9.15□□□□□ -0.94
CLN3-209ENST00000561689 CAMK2N1Q7Z7J9 78 aa9.15□□□□□ -0.95
CLN3-209ENST00000561689 LCE2BO14633 110 aa9.12□□□□□ -0.95
CLN3-209ENST00000561689 MT1BP07438 61 aa9.11□□□□□ -0.95
CLN3-209ENST00000561689 H3BS24 57 aa9.08□□□□□ -0.96
CLN3-209ENST00000561689 C10orf95Q9H7T3 257 aa9.06□□□□□ -0.96
CLN3-209ENST00000561689 USH2AO75445 5202 aa8.94□□□□□ -0.98
CLN3-209ENST00000561689 MT1XP80297 61 aa8.82□□□□□ -1
CLN3-209ENST00000561689 KRTAP10-5P60370 271 aa8.81□□□□□ -1
CLN3-209ENST00000561689 LCE2DQ5TA82 110 aaPredicted RBP8.75□□□□□ -1.01
CLN3-209ENST00000561689 FSIP2Q5CZC0 6907 aa8.73□□□□□ -1.01
CLN3-209ENST00000561689 PRO2289Q9P1D8 64 aa8.68□□□□□ -1.02
CLN3-209ENST00000561689 TNP1P09430 55 aa8.66□□□□□ -1.02
CLN3-209ENST00000561689 SSPOA2VEC9 5147 aa8.65□□□□□ -1.02
CLN3-209ENST00000561689 KRTAP19-6Q3LI70 58 aa8.51□□□□□ -1.05
CLN3-209ENST00000561689 KRTAP10-7P60409 375 aaPredicted RBP8.5□□□□□ -1.05
CLN3-209ENST00000561689 KRTAP9-2Q9BYQ4 174 aa8.48□□□□□ -1.05
CLN3-209ENST00000561689 PP632Q6XCG6 107 aa8.37□□□□□ -1.07
CLN3-209ENST00000561689 KRTAP10-12P60413 245 aa8.36□□□□□ -1.07
CLN3-209ENST00000561689 KRTAP15-1Q3LI76 137 aa8.36□□□□□ -1.07
CLN3-209ENST00000561689 LCE3AQ5TA76 89 aa8.34□□□□□ -1.07
CLN3-209ENST00000561689 KRTAP23-1A1A580 65 aa8.32□□□□□ -1.08
CLN3-209ENST00000561689 FCGBPQ9Y6R7 5405 aaPredicted RBP8.29□□□□□ -1.08
CLN3-209ENST00000561689 KMT2DO14686 5537 aa8.25□□□□□ -1.09
CLN3-209ENST00000561689 KRTAP4-8A0A0G2JLE6 195 aa8.19□□□□□ -1.1
CLN3-209ENST00000561689 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
CLN3-209ENST00000561689 CRCT1Q9UGL9 99 aa8.17□□□□□ -1.1
CLN3-209ENST00000561689 KRTAP8-1Q8IUC2 63 aa8.12□□□□□ -1.11
CLN3-209ENST00000561689 NDUFAF8A1L188 74 aa8.09□□□□□ -1.11
CLN3-209ENST00000561689 KRTAP12-3P60328 96 aa7.99□□□□□ -1.13
CLN3-209ENST00000561689 KRTAP19-5Q3LI72 72 aa7.99□□□□□ -1.13
CLN3-209ENST00000561689 MACF1Q9UPN3 7388 aaKnown RBP7.93□□□□□ -1.14
CLN3-209ENST00000561689 KRTAP19-7Q3SYF9 63 aa7.87□□□□□ -1.15
CLN3-209ENST00000561689 A0A0A0MQY5 61 aa7.8□□□□□ -1.16
CLN3-209ENST00000561689 KRTAP9-6A0A140TA67 174 aa7.79□□□□□ -1.16
CLN3-209ENST00000561689 SYNE2Q8WXH0 6885 aaKnown RBP7.73□□□□□ -1.17
CLN3-209ENST00000561689 SPRR5A0A1B0GTR4 108 aa7.72□□□□□ -1.17
CLN3-209ENST00000561689 MT1EP04732 61 aa7.72□□□□□ -1.17
CLN3-209ENST00000561689 LUZP6Q538Z0 58 aa7.7□□□□□ -1.18
CLN3-209ENST00000561689 MUC12Q9UKN1 5478 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 811.6 ms