RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 COX6B2Q6YFQ2 88 aa6.1□□□□□ -1.43
LDLR-212ENST00000560467 SVIPQ8NHG7 77 aa6.1□□□□□ -1.43
LDLR-212ENST00000560467 RBM12B-AS1Q9P1G2 102 aa6.09□□□□□ -1.43
LDLR-212ENST00000560467 SMIM26A0A096LP01 95 aa6.06□□□□□ -1.44
LDLR-212ENST00000560467 HRES1P13985 223 aa6.05□□□□□ -1.44
LDLR-212ENST00000560467 KRTAP9-7A8MTY7 169 aa6.04□□□□□ -1.44
LDLR-212ENST00000560467 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.04□□□□□ -1.44
LDLR-212ENST00000560467 SPANXA2-OT1Q8N9U9 137 aa6.03□□□□□ -1.44
LDLR-212ENST00000560467 C4orf26Q17RF5 130 aa6.02□□□□□ -1.45
LDLR-212ENST00000560467 A8MUN3 132 aa6.01□□□□□ -1.45
LDLR-212ENST00000560467 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
LDLR-212ENST00000560467 ACYP2P14621 99 aa5.97□□□□□ -1.45
LDLR-212ENST00000560467 USH2AO75445 5202 aa5.96□□□□□ -1.45
LDLR-212ENST00000560467 DMAC1Q96GE9 116 aa5.93□□□□□ -1.46
LDLR-212ENST00000560467 CHKB-CPT1BH3BT56 60 aa5.92□□□□□ -1.46
LDLR-212ENST00000560467 H1FX-AS1Q4G0G2 97 aa5.92□□□□□ -1.46
LDLR-212ENST00000560467 MPLKIPQ8TAP9 179 aa5.91□□□□□ -1.46
LDLR-212ENST00000560467 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
LDLR-212ENST00000560467 V9GYY9 64 aa5.91□□□□□ -1.46
LDLR-212ENST00000560467 SPTSSBQ8NFR3 76 aa5.88□□□□□ -1.47
LDLR-212ENST00000560467 FCGBPQ9Y6R7 5405 aaPredicted RBP5.88□□□□□ -1.47
LDLR-212ENST00000560467 Q1T7F1 81 aa5.85□□□□□ -1.47
LDLR-212ENST00000560467 S4R3F8 94 aa5.85□□□□□ -1.47
LDLR-212ENST00000560467 KRTAP3-1Q9BYR8 98 aa5.83□□□□□ -1.48
LDLR-212ENST00000560467 MT2AP02795 61 aa5.82□□□□□ -1.48
LDLR-212ENST00000560467 COA5Q86WW8 74 aa5.81□□□□□ -1.48
LDLR-212ENST00000560467 KRTAP19-1Q8IUB9 90 aa5.81□□□□□ -1.48
LDLR-212ENST00000560467 LCE2BO14633 110 aa5.79□□□□□ -1.48
LDLR-212ENST00000560467 PRO0628Q9UI54 55 aa5.79□□□□□ -1.48
LDLR-212ENST00000560467 MT1FP04733 61 aa5.78□□□□□ -1.48
LDLR-212ENST00000560467 CSAG1Q6PB30 78 aa5.78□□□□□ -1.48
LDLR-212ENST00000560467 LCA10Q71F78 164 aa5.75□□□□□ -1.49
LDLR-212ENST00000560467 KRTAP9-3Q9BYQ3 159 aa5.74□□□□□ -1.49
LDLR-212ENST00000560467 MACF1Q9UPN3 7388 aaKnown RBP5.73□□□□□ -1.49
LDLR-212ENST00000560467 KRTAP10-10P60014 251 aa5.71□□□□□ -1.5
LDLR-212ENST00000560467 SEC61GP60059 68 aa5.71□□□□□ -1.5
LDLR-212ENST00000560467 SYNE2Q8WXH0 6885 aaKnown RBP5.69□□□□□ -1.5
LDLR-212ENST00000560467 BRK1Q8WUW1 75 aa5.66□□□□□ -1.5
LDLR-212ENST00000560467 LINC01558Q9Y6Z2 57 aa5.64□□□□□ -1.51
LDLR-212ENST00000560467 PRR15LQ9BU68 103 aa5.63□□□□□ -1.51
LDLR-212ENST00000560467 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
LDLR-212ENST00000560467 KRTAP19-6Q3LI70 58 aa5.61□□□□□ -1.51
LDLR-212ENST00000560467 A0A1B0GU69 56 aa5.59□□□□□ -1.51
LDLR-212ENST00000560467 PSPHP1O15172 72 aa5.59□□□□□ -1.51
LDLR-212ENST00000560467 Q5VV11 94 aa5.59□□□□□ -1.51
LDLR-212ENST00000560467 H0YAA0 97 aa5.57□□□□□ -1.52
LDLR-212ENST00000560467 ADM2Q7Z4H4 148 aa5.56□□□□□ -1.52
LDLR-212ENST00000560467 KRTAP6-3Q3LI67 103 aa5.52□□□□□ -1.53
LDLR-212ENST00000560467 A6NED7 52 aa5.51□□□□□ -1.53
LDLR-212ENST00000560467 CDC42SE1Q9NRR8 79 aa5.51□□□□□ -1.53
LDLR-212ENST00000560467 CRIPTQ9P021 101 aa5.46□□□□□ -1.54
LDLR-212ENST00000560467 A0A1B0GU33 70 aa5.45□□□□□ -1.54
LDLR-212ENST00000560467 NEBP20929 6669 aa5.43□□□□□ -1.54
LDLR-212ENST00000560467 R4GN34 69 aa5.42□□□□□ -1.54
LDLR-212ENST00000560467 P0C880 135 aa5.41□□□□□ -1.54
LDLR-212ENST00000560467 M0QZ58 72 aa5.4□□□□□ -1.54
LDLR-212ENST00000560467 UQCR11O14957 56 aa5.4□□□□□ -1.54
LDLR-212ENST00000560467 PMAIP1Q13794 54 aa5.4□□□□□ -1.54
LDLR-212ENST00000560467 KRTAP3-2Q9BYR7 98 aa5.4□□□□□ -1.54
LDLR-212ENST00000560467 SPATA8Q6RVD6 105 aa5.33□□□□□ -1.56
LDLR-212ENST00000560467 MUC12Q9UKN1 5478 aa5.32□□□□□ -1.56
LDLR-212ENST00000560467 KTN1-AS1Q86SY8 53 aa5.31□□□□□ -1.56
LDLR-212ENST00000560467 MIR22HGQ0VDD5 57 aa5.3□□□□□ -1.56
LDLR-212ENST00000560467 A6NN06 94 aa5.29□□□□□ -1.56
LDLR-212ENST00000560467 LINC01554Q52M75 96 aa5.29□□□□□ -1.56
LDLR-212ENST00000560467 KRTAP20-1Q3LI63 56 aa5.28□□□□□ -1.56
LDLR-212ENST00000560467 A0A0D9SG42 100 aa5.24□□□□□ -1.57
LDLR-212ENST00000560467 K7ERS5 55 aa5.24□□□□□ -1.57
LDLR-212ENST00000560467 SPRR2GQ9BYE4 73 aa5.24□□□□□ -1.57
LDLR-212ENST00000560467 A8MU10 97 aa5.23□□□□□ -1.57
LDLR-212ENST00000560467 MT1BP07438 61 aa5.21□□□□□ -1.58
LDLR-212ENST00000560467 PLAC4Q8WY50 150 aa5.2□□□□□ -1.58
LDLR-212ENST00000560467 KRTAP13-4Q3LI77 160 aa5.19□□□□□ -1.58
LDLR-212ENST00000560467 SPINT4Q6UDR6 99 aa5.17□□□□□ -1.58
LDLR-212ENST00000560467 KMT2DO14686 5537 aa5.17□□□□□ -1.58
LDLR-212ENST00000560467 MDN1Q9NU22 5596 aa5.16□□□□□ -1.58
LDLR-212ENST00000560467 KRTAP5-9P26371 169 aa5.15□□□□□ -1.59
LDLR-212ENST00000560467 KRTAP10-5P60370 271 aa5.13□□□□□ -1.59
LDLR-212ENST00000560467 KRTAP19-8Q3LI54 63 aa5.13□□□□□ -1.59
LDLR-212ENST00000560467 CAMK2N1Q7Z7J9 78 aa5.11□□□□□ -1.59
LDLR-212ENST00000560467 KRTAP12-1P59990 96 aa5.05□□□□□ -1.6
LDLR-212ENST00000560467 KRTAP2-3P0C7H8 128 aa5.03□□□□□ -1.6
LDLR-212ENST00000560467 KRTAP12-2P59991 146 aa5.03□□□□□ -1.6
LDLR-212ENST00000560467 KRTAP2-4Q9BYR9 128 aa5.03□□□□□ -1.6
LDLR-212ENST00000560467 PRO2289Q9P1D8 64 aa5□□□□□ -1.61
LDLR-212ENST00000560467 SPRR2FQ96RM1 72 aa4.95□□□□□ -1.62
LDLR-212ENST00000560467 SPRR2EP22531 72 aa4.94□□□□□ -1.62
LDLR-212ENST00000560467 SPRR2BP35325 72 aa4.94□□□□□ -1.62
LDLR-212ENST00000560467 SPRR2AP35326 72 aa4.94□□□□□ -1.62
LDLR-212ENST00000560467 PRAC1Q96KF2 57 aa4.87□□□□□ -1.63
LDLR-212ENST00000560467 ROMO1P60602 79 aa4.86□□□□□ -1.63
LDLR-212ENST00000560467 KRTAP2-2Q9BYT5 123 aa4.85□□□□□ -1.63
LDLR-212ENST00000560467 KRTAP2-1Q9BYU5 128 aa4.85□□□□□ -1.63
LDLR-212ENST00000560467 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
LDLR-212ENST00000560467 KRTAP25-1Q3LHN0 102 aa4.83□□□□□ -1.64
LDLR-212ENST00000560467 MT1XP80297 61 aa4.82□□□□□ -1.64
LDLR-212ENST00000560467 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
LDLR-212ENST00000560467 TNP1P09430 55 aa4.81□□□□□ -1.64
LDLR-212ENST00000560467 SPRR2DP22532 72 aa4.78□□□□□ -1.64
LDLR-212ENST00000560467 C10orf95Q9H7T3 257 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms