RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CYP4F30PQ9H0H9 118 aa6.59□□□□□ -1.35
SHMT2-228ENST00000557302 H0Y9P7 68 aa6.58□□□□□ -1.36
SHMT2-228ENST00000557302 ANAPC13Q9BS18 74 aa6.58□□□□□ -1.36
SHMT2-228ENST00000557302 PCP4P48539 62 aa6.57□□□□□ -1.36
SHMT2-228ENST00000557302 MT2AP02795 61 aa6.56□□□□□ -1.36
SHMT2-228ENST00000557302 SERP2Q8N6R1 65 aa6.56□□□□□ -1.36
SHMT2-228ENST00000557302 KRTAP4-9Q9BYQ8 210 aa6.56□□□□□ -1.36
SHMT2-228ENST00000557302 TRAV7A0A075B6U4 112 aa6.55□□□□□ -1.36
SHMT2-228ENST00000557302 C1orf64Q8NEQ6 169 aa6.55□□□□□ -1.36
SHMT2-228ENST00000557302 OCR1Q9BZK8 76 aa6.54□□□□□ -1.36
SHMT2-228ENST00000557302 KRTAP9-7A8MTY7 169 aa6.53□□□□□ -1.36
SHMT2-228ENST00000557302 KRTAP3-1Q9BYR8 98 aa6.53□□□□□ -1.36
SHMT2-228ENST00000557302 COX7CP15954 63 aa6.52□□□□□ -1.37
SHMT2-228ENST00000557302 MP68P56378 58 aa6.51□□□□□ -1.37
SHMT2-228ENST00000557302 MT1FP04733 61 aa6.5□□□□□ -1.37
SHMT2-228ENST00000557302 KRTAP10-10P60014 251 aa6.49□□□□□ -1.37
SHMT2-228ENST00000557302 KRTAP19-4Q3LI73 84 aa6.49□□□□□ -1.37
SHMT2-228ENST00000557302 LINC00208Q96KT6 92 aa6.49□□□□□ -1.37
SHMT2-228ENST00000557302 S4R3F8 94 aa6.48□□□□□ -1.37
SHMT2-228ENST00000557302 C5orf47Q569G3 176 aa6.47□□□□□ -1.37
SHMT2-228ENST00000557302 H3BPC8 53 aa6.44□□□□□ -1.38
SHMT2-228ENST00000557302 KRTAP4-2Q9BYR5 136 aa6.43□□□□□ -1.38
SHMT2-228ENST00000557302 KLKP1Q107X0 134 aa6.42□□□□□ -1.38
SHMT2-228ENST00000557302 LCA10Q71F78 164 aa6.42□□□□□ -1.38
SHMT2-228ENST00000557302 USH2AO75445 5202 aa6.42□□□□□ -1.38
SHMT2-228ENST00000557302 CSAG1Q6PB30 78 aa6.41□□□□□ -1.38
SHMT2-228ENST00000557302 KRTAP9-3Q9BYQ3 159 aa6.4□□□□□ -1.38
SHMT2-228ENST00000557302 SSPOA2VEC9 5147 aa6.39□□□□□ -1.39
SHMT2-228ENST00000557302 CCDC179H3BU77 68 aa6.39□□□□□ -1.39
SHMT2-228ENST00000557302 NDUFC1O43677 76 aa6.38□□□□□ -1.39
SHMT2-228ENST00000557302 A8MUN3 132 aa6.37□□□□□ -1.39
SHMT2-228ENST00000557302 C20orf197Q8N268 126 aa6.37□□□□□ -1.39
SHMT2-228ENST00000557302 KRTAP4-11Q9BYQ6 195 aa6.34□□□□□ -1.39
SHMT2-228ENST00000557302 H7BZZ5 65 aa6.28□□□□□ -1.4
SHMT2-228ENST00000557302 TMEM258P61165 79 aa6.28□□□□□ -1.4
SHMT2-228ENST00000557302 LCE5AQ5TCM9 118 aa6.28□□□□□ -1.4
SHMT2-228ENST00000557302 SNURFQ9Y675 71 aa6.28□□□□□ -1.4
SHMT2-228ENST00000557302 FCGBPQ9Y6R7 5405 aaPredicted RBP6.26□□□□□ -1.41
SHMT2-228ENST00000557302 ATP5EP56381 51 aaPredicted RBP6.25□□□□□ -1.41
SHMT2-228ENST00000557302 DMAC1Q96GE9 116 aa6.25□□□□□ -1.41
SHMT2-228ENST00000557302 SPANXA2-OT1Q8N9U9 137 aa6.24□□□□□ -1.41
SHMT2-228ENST00000557302 CYSTM1Q9H1C7 97 aa6.24□□□□□ -1.41
SHMT2-228ENST00000557302 H0YAA0 97 aa6.16□□□□□ -1.42
SHMT2-228ENST00000557302 ACYP2P14621 99 aa6.14□□□□□ -1.43
SHMT2-228ENST00000557302 SPRR2GQ9BYE4 73 aa6.13□□□□□ -1.43
SHMT2-228ENST00000557302 CRIPTQ9P021 101 aa6.13□□□□□ -1.43
SHMT2-228ENST00000557302 ADM2Q7Z4H4 148 aa6.11□□□□□ -1.43
SHMT2-228ENST00000557302 RPS28P62857 69 aaKnown RBP6.1□□□□□ -1.43
SHMT2-228ENST00000557302 MACF1Q9UPN3 7388 aaKnown RBP6.09□□□□□ -1.43
SHMT2-228ENST00000557302 KRTAP19-6Q3LI70 58 aa6.08□□□□□ -1.44
SHMT2-228ENST00000557302 SERP1Q9Y6X1 66 aa6.07□□□□□ -1.44
SHMT2-228ENST00000557302 CHKB-CPT1BH3BT56 60 aa6.05□□□□□ -1.44
SHMT2-228ENST00000557302 KRTAP19-8Q3LI54 63 aa6.05□□□□□ -1.44
SHMT2-228ENST00000557302 Q5VV11 94 aa6.05□□□□□ -1.44
SHMT2-228ENST00000557302 SPTSSBQ8NFR3 76 aa6.05□□□□□ -1.44
SHMT2-228ENST00000557302 SYNE2Q8WXH0 6885 aaKnown RBP6.02□□□□□ -1.45
SHMT2-228ENST00000557302 MT1BP07438 61 aa6.02□□□□□ -1.45
SHMT2-228ENST00000557302 P0C880 135 aa5.99□□□□□ -1.45
SHMT2-228ENST00000557302 COA5Q86WW8 74 aa5.95□□□□□ -1.46
SHMT2-228ENST00000557302 R4GN34 69 aa5.95□□□□□ -1.46
SHMT2-228ENST00000557302 SMIM26A0A096LP01 95 aa5.91□□□□□ -1.46
SHMT2-228ENST00000557302 M0QZ58 72 aa5.91□□□□□ -1.46
SHMT2-228ENST00000557302 A6NN06 94 aa5.89□□□□□ -1.47
SHMT2-228ENST00000557302 V9GYY9 64 aa5.85□□□□□ -1.47
SHMT2-228ENST00000557302 KRTAP10-5P60370 271 aa5.84□□□□□ -1.47
SHMT2-228ENST00000557302 Q1T7F1 81 aa5.82□□□□□ -1.48
SHMT2-228ENST00000557302 KRTAP6-3Q3LI67 103 aa5.82□□□□□ -1.48
SHMT2-228ENST00000557302 LINC01554Q52M75 96 aa5.82□□□□□ -1.48
SHMT2-228ENST00000557302 PLAC4Q8WY50 150 aa5.82□□□□□ -1.48
SHMT2-228ENST00000557302 LINC01558Q9Y6Z2 57 aa5.76□□□□□ -1.49
SHMT2-228ENST00000557302 SEC61GP60059 68 aa5.75□□□□□ -1.49
SHMT2-228ENST00000557302 PRO2289Q9P1D8 64 aa5.73□□□□□ -1.49
SHMT2-228ENST00000557302 MT1XP80297 61 aa5.7□□□□□ -1.5
SHMT2-228ENST00000557302 KRTAP13-4Q3LI77 160 aa5.68□□□□□ -1.5
SHMT2-228ENST00000557302 PRR15LQ9BU68 103 aa5.68□□□□□ -1.5
SHMT2-228ENST00000557302 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
SHMT2-228ENST00000557302 NEBP20929 6669 aa5.68□□□□□ -1.5
SHMT2-228ENST00000557302 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
SHMT2-228ENST00000557302 A0A1B0GU69 56 aa5.64□□□□□ -1.51
SHMT2-228ENST00000557302 A0A1B0GU33 70 aa5.61□□□□□ -1.51
SHMT2-228ENST00000557302 PSPHP1O15172 72 aa5.58□□□□□ -1.52
SHMT2-228ENST00000557302 SPATA8Q6RVD6 105 aa5.56□□□□□ -1.52
SHMT2-228ENST00000557302 MDN1Q9NU22 5596 aa5.55□□□□□ -1.52
SHMT2-228ENST00000557302 A0A0D9SG42 100 aa5.55□□□□□ -1.52
SHMT2-228ENST00000557302 KMT2DO14686 5537 aa5.54□□□□□ -1.52
SHMT2-228ENST00000557302 KRTAP5-9P26371 169 aa5.52□□□□□ -1.53
SHMT2-228ENST00000557302 KRTAP12-2P59991 146 aa5.52□□□□□ -1.53
SHMT2-228ENST00000557302 CAMK2N1Q7Z7J9 78 aa5.51□□□□□ -1.53
SHMT2-228ENST00000557302 UQCR11O14957 56 aa5.5□□□□□ -1.53
SHMT2-228ENST00000557302 A6NED7 52 aa5.46□□□□□ -1.54
SHMT2-228ENST00000557302 SPINT4Q6UDR6 99 aa5.46□□□□□ -1.54
SHMT2-228ENST00000557302 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
SHMT2-228ENST00000557302 KRTAP10-7P60409 375 aaPredicted RBP5.44□□□□□ -1.54
SHMT2-228ENST00000557302 CDC42SE1Q9NRR8 79 aa5.43□□□□□ -1.54
SHMT2-228ENST00000557302 KRTAP12-1P59990 96 aa5.42□□□□□ -1.54
SHMT2-228ENST00000557302 KRTAP10-12P60413 245 aa5.42□□□□□ -1.54
SHMT2-228ENST00000557302 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
SHMT2-228ENST00000557302 A8MU10 97 aa5.4□□□□□ -1.54
SHMT2-228ENST00000557302 MIR22HGQ0VDD5 57 aa5.4□□□□□ -1.54
SHMT2-228ENST00000557302 SPRR2FQ96RM1 72 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms