RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 A0A0A0MQY5 61 aa6.35□□□□□ -1.39
SHMT2-219ENST00000555563 CSAG1Q6PB30 78 aa6.35□□□□□ -1.39
SHMT2-219ENST00000555563 SYNE2Q8WXH0 6885 aaKnown RBP6.34□□□□□ -1.39
SHMT2-219ENST00000555563 OCR1Q9BZK8 76 aa6.33□□□□□ -1.4
SHMT2-219ENST00000555563 FAM236AA0A1B0GUQ0 79 aa6.31□□□□□ -1.4
SHMT2-219ENST00000555563 FAM236BA0A1B0GV22 79 aa6.31□□□□□ -1.4
SHMT2-219ENST00000555563 LINC00208Q96KT6 92 aa6.29□□□□□ -1.4
SHMT2-219ENST00000555563 KRTAP19-6Q3LI70 58 aa6.27□□□□□ -1.41
SHMT2-219ENST00000555563 MP68P56378 58 aa6.26□□□□□ -1.41
SHMT2-219ENST00000555563 KLKP1Q107X0 134 aa6.26□□□□□ -1.41
SHMT2-219ENST00000555563 A8MUN3 132 aa6.22□□□□□ -1.41
SHMT2-219ENST00000555563 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
SHMT2-219ENST00000555563 SCGB1A1P11684 91 aa6.21□□□□□ -1.42
SHMT2-219ENST00000555563 NDUFC1O43677 76 aa6.19□□□□□ -1.42
SHMT2-219ENST00000555563 H3BPC8 53 aa6.18□□□□□ -1.42
SHMT2-219ENST00000555563 MT-ATP8P03928 68 aa6.18□□□□□ -1.42
SHMT2-219ENST00000555563 SPRR2GQ9BYE4 73 aa6.18□□□□□ -1.42
SHMT2-219ENST00000555563 K7ERU9 68 aa6.17□□□□□ -1.42
SHMT2-219ENST00000555563 KRTAP6-3Q3LI67 103 aa6.17□□□□□ -1.42
SHMT2-219ENST00000555563 IMUPQ9GZP8 106 aa6.17□□□□□ -1.42
SHMT2-219ENST00000555563 MT1BP07438 61 aa6.13□□□□□ -1.43
SHMT2-219ENST00000555563 KRTAP19-8Q3LI54 63 aa6.13□□□□□ -1.43
SHMT2-219ENST00000555563 Q5VV11 94 aa6.12□□□□□ -1.43
SHMT2-219ENST00000555563 H0YAA0 97 aa6.11□□□□□ -1.43
SHMT2-219ENST00000555563 DMAC1Q96GE9 116 aa6.1□□□□□ -1.43
SHMT2-219ENST00000555563 CRIPTQ9P021 101 aa6.09□□□□□ -1.43
SHMT2-219ENST00000555563 ADM2Q7Z4H4 148 aa6.06□□□□□ -1.44
SHMT2-219ENST00000555563 SMIM20Q8N5G0 67 aa6.06□□□□□ -1.44
SHMT2-219ENST00000555563 TRAV7A0A075B6U4 112 aa6.05□□□□□ -1.44
SHMT2-219ENST00000555563 A6NN06 94 aa6.01□□□□□ -1.45
SHMT2-219ENST00000555563 KRTAP10-5P60370 271 aa5.96□□□□□ -1.46
SHMT2-219ENST00000555563 NEBP20929 6669 aa5.96□□□□□ -1.46
SHMT2-219ENST00000555563 MUC12Q9UKN1 5478 aa5.95□□□□□ -1.46
SHMT2-219ENST00000555563 P0C880 135 aa5.95□□□□□ -1.46
SHMT2-219ENST00000555563 SNURFQ9Y675 71 aa5.94□□□□□ -1.46
SHMT2-219ENST00000555563 ACYP2P14621 99 aa5.93□□□□□ -1.46
SHMT2-219ENST00000555563 C20orf197Q8N268 126 aa5.91□□□□□ -1.46
SHMT2-219ENST00000555563 SERP2Q8N6R1 65 aa5.89□□□□□ -1.47
SHMT2-219ENST00000555563 R4GN34 69 aa5.89□□□□□ -1.47
SHMT2-219ENST00000555563 KRTAP20-1Q3LI63 56 aa5.88□□□□□ -1.47
SHMT2-219ENST00000555563 M0QZ58 72 aa5.86□□□□□ -1.47
SHMT2-219ENST00000555563 CHKB-CPT1BH3BT56 60 aa5.84□□□□□ -1.47
SHMT2-219ENST00000555563 SPANXA2-OT1Q8N9U9 137 aa5.84□□□□□ -1.47
SHMT2-219ENST00000555563 SPTSSBQ8NFR3 76 aa5.84□□□□□ -1.47
SHMT2-219ENST00000555563 PLAC4Q8WY50 150 aa5.79□□□□□ -1.48
SHMT2-219ENST00000555563 MT1XP80297 61 aa5.78□□□□□ -1.48
SHMT2-219ENST00000555563 LINC01554Q52M75 96 aa5.77□□□□□ -1.49
SHMT2-219ENST00000555563 PRO2289Q9P1D8 64 aa5.76□□□□□ -1.49
SHMT2-219ENST00000555563 MDN1Q9NU22 5596 aa5.74□□□□□ -1.49
SHMT2-219ENST00000555563 COX7CP15954 63 aa5.73□□□□□ -1.49
SHMT2-219ENST00000555563 KRTAP5-9P26371 169 aa5.73□□□□□ -1.49
SHMT2-219ENST00000555563 KMT2DO14686 5537 aa5.71□□□□□ -1.5
SHMT2-219ENST00000555563 COA5Q86WW8 74 aa5.68□□□□□ -1.5
SHMT2-219ENST00000555563 CYSTM1Q9H1C7 97 aa5.67□□□□□ -1.5
SHMT2-219ENST00000555563 SEC61GP60059 68 aa5.66□□□□□ -1.5
SHMT2-219ENST00000555563 KRTAP2-3P0C7H8 128 aa5.65□□□□□ -1.5
SHMT2-219ENST00000555563 KRTAP2-4Q9BYR9 128 aa5.65□□□□□ -1.5
SHMT2-219ENST00000555563 H7BZZ5 65 aa5.64□□□□□ -1.51
SHMT2-219ENST00000555563 KRTAP13-4Q3LI77 160 aa5.61□□□□□ -1.51
SHMT2-219ENST00000555563 KRTAP12-2P59991 146 aa5.6□□□□□ -1.51
SHMT2-219ENST00000555563 ANAPC13Q9BS18 74 aa5.58□□□□□ -1.52
SHMT2-219ENST00000555563 KRTAP8-1Q8IUC2 63 aa5.53□□□□□ -1.52
SHMT2-219ENST00000555563 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
SHMT2-219ENST00000555563 SPRR2FQ96RM1 72 aa5.52□□□□□ -1.53
SHMT2-219ENST00000555563 SERP1Q9Y6X1 66 aa5.5□□□□□ -1.53
SHMT2-219ENST00000555563 KRTAP4-8A0A0G2JLE6 195 aa5.49□□□□□ -1.53
SHMT2-219ENST00000555563 SPRR2EP22531 72 aa5.49□□□□□ -1.53
SHMT2-219ENST00000555563 SPRR2BP35325 72 aa5.49□□□□□ -1.53
SHMT2-219ENST00000555563 SPRR2AP35326 72 aa5.49□□□□□ -1.53
SHMT2-219ENST00000555563 KRTAP4-8Q9BYQ9 185 aa5.49□□□□□ -1.53
SHMT2-219ENST00000555563 CCDC179H3BU77 68 aa5.48□□□□□ -1.53
SHMT2-219ENST00000555563 KRTAP10-12P60413 245 aa5.47□□□□□ -1.53
SHMT2-219ENST00000555563 KRTAP2-2Q9BYT5 123 aa5.46□□□□□ -1.54
SHMT2-219ENST00000555563 KRTAP2-1Q9BYU5 128 aa5.46□□□□□ -1.54
SHMT2-219ENST00000555563 A0A0D9SG42 100 aa5.43□□□□□ -1.54
SHMT2-219ENST00000555563 A0A1B0GU33 70 aa5.43□□□□□ -1.54
SHMT2-219ENST00000555563 KRTAP19-4Q3LI73 84 aa5.43□□□□□ -1.54
SHMT2-219ENST00000555563 SPATA8Q6RVD6 105 aa5.43□□□□□ -1.54
SHMT2-219ENST00000555563 CAMK2N1Q7Z7J9 78 aa5.43□□□□□ -1.54
SHMT2-219ENST00000555563 A0A1B0GU69 56 aa5.38□□□□□ -1.55
SHMT2-219ENST00000555563 ATP5EP56381 51 aaPredicted RBP5.37□□□□□ -1.55
SHMT2-219ENST00000555563 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
SHMT2-219ENST00000555563 KRTAP12-1P59990 96 aa5.33□□□□□ -1.56
SHMT2-219ENST00000555563 SPINT4Q6UDR6 99 aa5.33□□□□□ -1.56
SHMT2-219ENST00000555563 SPRR2DP22532 72 aa5.31□□□□□ -1.56
SHMT2-219ENST00000555563 SMIM26A0A096LP01 95 aa5.27□□□□□ -1.57
SHMT2-219ENST00000555563 TMEM258P61165 79 aa5.27□□□□□ -1.57
SHMT2-219ENST00000555563 A8MU10 97 aa5.26□□□□□ -1.57
SHMT2-219ENST00000555563 PRR15LQ9BU68 103 aa5.23□□□□□ -1.57
SHMT2-219ENST00000555563 LINC01558Q9Y6Z2 57 aa5.22□□□□□ -1.57
SHMT2-219ENST00000555563 PRAC1Q96KF2 57 aa5.21□□□□□ -1.58
SHMT2-219ENST00000555563 LCE3BQ5TA77 95 aa5.2□□□□□ -1.58
SHMT2-219ENST00000555563 KRTAP19-7Q3SYF9 63 aa5.16□□□□□ -1.58
SHMT2-219ENST00000555563 MT1EP04732 61 aa5.12□□□□□ -1.59
SHMT2-219ENST00000555563 KRTAP15-1Q3LI76 137 aa5.09□□□□□ -1.59
SHMT2-219ENST00000555563 GPR98Q8WXG9 6306 aa5.08□□□□□ -1.6
SHMT2-219ENST00000555563 C10orf95Q9H7T3 257 aa5.08□□□□□ -1.6
SHMT2-219ENST00000555563 UQCR11O14957 56 aa5.06□□□□□ -1.6
SHMT2-219ENST00000555563 KRTAP19-5Q3LI72 72 aa5.06□□□□□ -1.6
SHMT2-219ENST00000555563 V9GYY9 64 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 163.3 ms