RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 A8MUU9 505 aa4.86□□□□□ -1.63
TDP1-210ENST00000554976 IGKV2-30P06310 120 aa4.82□□□□□ -1.64
TDP1-210ENST00000554976 HRES1P13985 223 aa4.82□□□□□ -1.64
TDP1-210ENST00000554976 C9orf92A6NGG3 77 aa4.8□□□□□ -1.64
TDP1-210ENST00000554976 CSAG1Q6PB30 78 aa4.8□□□□□ -1.64
TDP1-210ENST00000554976 SPATA8Q6RVD6 105 aa4.8□□□□□ -1.64
TDP1-210ENST00000554976 PCOTHQ58A44 107 aa4.78□□□□□ -1.64
TDP1-210ENST00000554976 LCE2CQ5TA81 110 aa4.77□□□□□ -1.65
TDP1-210ENST00000554976 XP32Q5T750 250 aa4.75□□□□□ -1.65
TDP1-210ENST00000554976 ROMO1P60602 79 aa4.73□□□□□ -1.65
TDP1-210ENST00000554976 RPL37P61927 97 aaKnown RBP4.72□□□□□ -1.65
TDP1-210ENST00000554976 DMAC1Q96GE9 116 aa4.71□□□□□ -1.66
TDP1-210ENST00000554976 LPAP08519 4548 aa4.71□□□□□ -1.66
TDP1-210ENST00000554976 MIR22HGQ0VDD5 57 aa4.71□□□□□ -1.66
TDP1-210ENST00000554976 TPRXLQ17RH7 258 aa4.7□□□□□ -1.66
TDP1-210ENST00000554976 LCE2AQ5TA79 106 aaPredicted RBP4.7□□□□□ -1.66
TDP1-210ENST00000554976 MUC17Q685J3 4493 aa4.69□□□□□ -1.66
TDP1-210ENST00000554976 UQCR11O14957 56 aa4.69□□□□□ -1.66
TDP1-210ENST00000554976 A0A1B0GU69 56 aa4.69□□□□□ -1.66
TDP1-210ENST00000554976 IGKV2D-30A0A075B6S6 120 aa4.68□□□□□ -1.66
TDP1-210ENST00000554976 ACYP2P14621 99 aa4.67□□□□□ -1.66
TDP1-210ENST00000554976 KRTAP3-1Q9BYR8 98 aa4.66□□□□□ -1.66
TDP1-210ENST00000554976 KRTAP25-1Q3LHN0 102 aa4.65□□□□□ -1.67
TDP1-210ENST00000554976 PCLOQ9Y6V0 5065 aa4.64□□□□□ -1.67
TDP1-210ENST00000554976 LRP2P98164 4655 aa4.64□□□□□ -1.67
TDP1-210ENST00000554976 A0A0A0MQY5 61 aa4.62□□□□□ -1.67
TDP1-210ENST00000554976 P0C880 135 aa4.59□□□□□ -1.67
TDP1-210ENST00000554976 DMBT1Q9UGM3 2413 aaPredicted RBP4.59□□□□□ -1.67
TDP1-210ENST00000554976 COX6B2Q6YFQ2 88 aa4.56□□□□□ -1.68
TDP1-210ENST00000554976 HMCN2Q8NDA2 5059 aa4.54□□□□□ -1.68
TDP1-210ENST00000554976 KRTAP4-1Q9BYQ7 146 aa4.52□□□□□ -1.69
TDP1-210ENST00000554976 LORP23490 312 aaPredicted RBP4.51□□□□□ -1.69
TDP1-210ENST00000554976 HERC1Q15751 4861 aa4.49□□□□□ -1.69
TDP1-210ENST00000554976 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
TDP1-210ENST00000554976 SEC61BP60468 96 aaKnown RBP4.45□□□□□ -1.7
TDP1-210ENST00000554976 H0YAA0 97 aa4.42□□□□□ -1.7
TDP1-210ENST00000554976 H1FX-AS1Q4G0G2 97 aa4.41□□□□□ -1.7
TDP1-210ENST00000554976 NDUFAF8A1L188 74 aa4.39□□□□□ -1.71
TDP1-210ENST00000554976 FLGP20930 4061 aaPredicted RBP4.39□□□□□ -1.71
TDP1-210ENST00000554976 S4R3F8 94 aa4.38□□□□□ -1.71
TDP1-210ENST00000554976 KRTAP15-1Q3LI76 137 aa4.37□□□□□ -1.71
TDP1-210ENST00000554976 SPINT4Q6UDR6 99 aa4.36□□□□□ -1.71
TDP1-210ENST00000554976 KRTAP10-6P60371 365 aaPredicted RBP4.34□□□□□ -1.72
TDP1-210ENST00000554976 MUC2Q02817 5179 aa4.33□□□□□ -1.72
TDP1-210ENST00000554976 K7ERS5 55 aa4.32□□□□□ -1.72
TDP1-210ENST00000554976 CRIPTQ9P021 101 aa4.32□□□□□ -1.72
TDP1-210ENST00000554976 A0A1B0GU33 70 aa4.3□□□□□ -1.72
TDP1-210ENST00000554976 RNF213Q63HN8 5207 aa4.28□□□□□ -1.72
TDP1-210ENST00000554976 UBR4Q5T4S7 5183 aa4.27□□□□□ -1.73
TDP1-210ENST00000554976 LUZP6Q538Z0 58 aa4.26□□□□□ -1.73
TDP1-210ENST00000554976 KRTAP13-4Q3LI77 160 aa4.23□□□□□ -1.73
TDP1-210ENST00000554976 MT1HP80294 61 aa4.16□□□□□ -1.74
TDP1-210ENST00000554976 FAT4Q6V0I7 4981 aa4.14□□□□□ -1.75
TDP1-210ENST00000554976 C10orf95Q9H7T3 257 aa4.13□□□□□ -1.75
TDP1-210ENST00000554976 M0QZ58 72 aa4.09□□□□□ -1.75
TDP1-210ENST00000554976 KRTAP12-1P59990 96 aa4.04□□□□□ -1.76
TDP1-210ENST00000554976 KRTAP9-8Q9BYQ0 159 aa4.04□□□□□ -1.76
TDP1-210ENST00000554976 KRTAP12-2P59991 146 aa4.04□□□□□ -1.76
TDP1-210ENST00000554976 A0A0D9SG42 100 aa4□□□□□ -1.77
TDP1-210ENST00000554976 MT2AP02795 61 aa4□□□□□ -1.77
TDP1-210ENST00000554976 MT1FP04733 61 aa3.99□□□□□ -1.77
TDP1-210ENST00000554976 R4GN34 69 aa3.99□□□□□ -1.77
TDP1-210ENST00000554976 SPRR2GQ9BYE4 73 aa3.97□□□□□ -1.77
TDP1-210ENST00000554976 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
TDP1-210ENST00000554976 M0R2T5 61 aa3.92□□□□□ -1.78
TDP1-210ENST00000554976 PLAC4Q8WY50 150 aa3.91□□□□□ -1.78
TDP1-210ENST00000554976 KRTAP9-3Q9BYQ3 159 aa3.89□□□□□ -1.79
TDP1-210ENST00000554976 CAMK2N1Q7Z7J9 78 aa3.88□□□□□ -1.79
TDP1-210ENST00000554976 KRTAP19-8Q3LI54 63 aa3.87□□□□□ -1.79
TDP1-210ENST00000554976 KRTAP10-10P60014 251 aa3.86□□□□□ -1.79
TDP1-210ENST00000554976 MT1BP07438 61 aa3.82□□□□□ -1.8
TDP1-210ENST00000554976 PRO2289Q9P1D8 64 aa3.75□□□□□ -1.81
TDP1-210ENST00000554976 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.82
TDP1-210ENST00000554976 KRTAP10-5P60370 271 aa3.71□□□□□ -1.82
TDP1-210ENST00000554976 MT1XP80297 61 aa3.71□□□□□ -1.82
TDP1-210ENST00000554976 PP632Q6XCG6 107 aa3.68□□□□□ -1.82
TDP1-210ENST00000554976 USH2AO75445 5202 aa3.64□□□□□ -1.83
TDP1-210ENST00000554976 SPRR5A0A1B0GTR4 108 aa3.63□□□□□ -1.83
TDP1-210ENST00000554976 INE1O15225 51 aa3.6□□□□□ -1.83
TDP1-210ENST00000554976 TNP1P09430 55 aa3.59□□□□□ -1.84
TDP1-210ENST00000554976 SSPOA2VEC9 5147 aa3.57□□□□□ -1.84
TDP1-210ENST00000554976 KRTAP10-7P60409 375 aaPredicted RBP3.55□□□□□ -1.84
TDP1-210ENST00000554976 KRTAP10-12P60413 245 aa3.53□□□□□ -1.84
TDP1-210ENST00000554976 LCE3AQ5TA76 89 aa3.51□□□□□ -1.85
TDP1-210ENST00000554976 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
TDP1-210ENST00000554976 KRTAP8-1Q8IUC2 63 aa3.46□□□□□ -1.86
TDP1-210ENST00000554976 KRTAP4-8A0A0G2JLE6 195 aa3.37□□□□□ -1.87
TDP1-210ENST00000554976 KRTAP4-8Q9BYQ9 185 aa3.37□□□□□ -1.87
TDP1-210ENST00000554976 LCE4AQ5TA78 99 aa3.37□□□□□ -1.87
TDP1-210ENST00000554976 KMT2DO14686 5537 aa3.36□□□□□ -1.87
TDP1-210ENST00000554976 KRTAP12-3P60328 96 aa3.33□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
TDP1-210ENST00000554976 FCGBPQ9Y6R7 5405 aaPredicted RBP3.32□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP19-7Q3SYF9 63 aa3.32□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP9-2Q9BYQ4 174 aa3.31□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP9-6A0A140TA67 174 aa3.3□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP9-7A8MTY7 169 aa3.3□□□□□ -1.88
TDP1-210ENST00000554976 KRTAP19-4Q3LI73 84 aa3.26□□□□□ -1.89
TDP1-210ENST00000554976 KRTAP9-9Q9BYP9 154 aa3.26□□□□□ -1.89
TDP1-210ENST00000554976 KRTAP9-4Q9BYQ2 154 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms