RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 A8MUU9 505 aa9.36□□□□□ -0.91
SHOX-204ENST00000554971 C9orf92A6NGG3 77 aa9.35□□□□□ -0.91
SHOX-204ENST00000554971 PMAIP1Q13794 54 aa9.32□□□□□ -0.92
SHOX-204ENST00000554971 XP32Q5T750 250 aa9.31□□□□□ -0.92
SHOX-204ENST00000554971 A0A1B0GU69 56 aa9.31□□□□□ -0.92
SHOX-204ENST00000554971 A8MU10 97 aa9.31□□□□□ -0.92
SHOX-204ENST00000554971 SPINK7P58062 85 aa9.3□□□□□ -0.92
SHOX-204ENST00000554971 SPTSSBQ8NFR3 76 aa9.25□□□□□ -0.93
SHOX-204ENST00000554971 A6NN06 94 aa9.19□□□□□ -0.94
SHOX-204ENST00000554971 UQCR11O14957 56 aa9.17□□□□□ -0.94
SHOX-204ENST00000554971 SPATA8Q6RVD6 105 aa9.17□□□□□ -0.94
SHOX-204ENST00000554971 RPL37P61927 97 aaKnown RBP9.13□□□□□ -0.95
SHOX-204ENST00000554971 KTN1-AS1Q86SY8 53 aa9.13□□□□□ -0.95
SHOX-204ENST00000554971 SEC61GP60059 68 aa9.12□□□□□ -0.95
SHOX-204ENST00000554971 SEC61BP60468 96 aaKnown RBP9.1□□□□□ -0.95
SHOX-204ENST00000554971 KRTAP4-1Q9BYQ7 146 aa9.1□□□□□ -0.95
SHOX-204ENST00000554971 MIR22HGQ0VDD5 57 aa9.09□□□□□ -0.95
SHOX-204ENST00000554971 FAT4Q6V0I7 4981 aa9.07□□□□□ -0.96
SHOX-204ENST00000554971 KRTAP3-1Q9BYR8 98 aa9.03□□□□□ -0.96
SHOX-204ENST00000554971 COX6B2Q6YFQ2 88 aa9.02□□□□□ -0.97
SHOX-204ENST00000554971 A0A1B0GU33 70 aa8.84□□□□□ -0.99
SHOX-204ENST00000554971 KRTAP19-2Q3LHN2 52 aa8.84□□□□□ -0.99
SHOX-204ENST00000554971 FLGP20930 4061 aaPredicted RBP8.84□□□□□ -0.99
SHOX-204ENST00000554971 H1FX-AS1Q4G0G2 97 aa8.81□□□□□ -1
SHOX-204ENST00000554971 LCE2CQ5TA81 110 aa8.78□□□□□ -1
SHOX-204ENST00000554971 RBM12B-AS1Q9P1G2 102 aa8.78□□□□□ -1
SHOX-204ENST00000554971 H0YAA0 97 aa8.76□□□□□ -1.01
SHOX-204ENST00000554971 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
SHOX-204ENST00000554971 KRTAP3-3Q9BYR6 98 aa8.68□□□□□ -1.02
SHOX-204ENST00000554971 S4R3F8 94 aa8.67□□□□□ -1.02
SHOX-204ENST00000554971 K7ERS5 55 aa8.62□□□□□ -1.03
SHOX-204ENST00000554971 MT1HP80294 61 aa8.6□□□□□ -1.03
SHOX-204ENST00000554971 KRTAP10-6P60371 365 aaPredicted RBP8.58□□□□□ -1.04
SHOX-204ENST00000554971 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
SHOX-204ENST00000554971 ADM2Q7Z4H4 148 aa8.57□□□□□ -1.04
SHOX-204ENST00000554971 KRTAP3-2Q9BYR7 98 aa8.54□□□□□ -1.04
SHOX-204ENST00000554971 CSAG1Q6PB30 78 aa8.44□□□□□ -1.06
SHOX-204ENST00000554971 LINC01554Q52M75 96 aa8.42□□□□□ -1.06
SHOX-204ENST00000554971 M0R2T5 61 aa8.39□□□□□ -1.07
SHOX-204ENST00000554971 KRTAP13-4Q3LI77 160 aa8.38□□□□□ -1.07
SHOX-204ENST00000554971 P0C880 135 aa8.37□□□□□ -1.07
SHOX-204ENST00000554971 LORP23490 312 aaPredicted RBP8.36□□□□□ -1.07
SHOX-204ENST00000554971 KRTAP25-1Q3LHN0 102 aa8.33□□□□□ -1.08
SHOX-204ENST00000554971 M0QZ58 72 aa8.32□□□□□ -1.08
SHOX-204ENST00000554971 ROMO1P60602 79 aa8.32□□□□□ -1.08
SHOX-204ENST00000554971 A0A0D9SG42 100 aa8.28□□□□□ -1.08
SHOX-204ENST00000554971 KRTAP9-8Q9BYQ0 159 aa8.23□□□□□ -1.09
SHOX-204ENST00000554971 KRTAP12-1P59990 96 aa8.14□□□□□ -1.11
SHOX-204ENST00000554971 MT2AP02795 61 aa8.13□□□□□ -1.11
SHOX-204ENST00000554971 KRTAP12-2P59991 146 aa8.13□□□□□ -1.11
SHOX-204ENST00000554971 MT1FP04733 61 aa8.09□□□□□ -1.11
SHOX-204ENST00000554971 SPINT4Q6UDR6 99 aa8.07□□□□□ -1.12
SHOX-204ENST00000554971 KRTAP9-2Q9BYQ4 174 aa8.07□□□□□ -1.12
SHOX-204ENST00000554971 LCE2DQ5TA82 110 aaPredicted RBP8.03□□□□□ -1.12
SHOX-204ENST00000554971 R4GN34 69 aa8.03□□□□□ -1.12
SHOX-204ENST00000554971 CRIPTQ9P021 101 aa8□□□□□ -1.13
SHOX-204ENST00000554971 FSIP2Q5CZC0 6907 aa8□□□□□ -1.13
SHOX-204ENST00000554971 KRTAP10-10P60014 251 aa7.99□□□□□ -1.13
SHOX-204ENST00000554971 KRTAP9-3Q9BYQ3 159 aa7.95□□□□□ -1.14
SHOX-204ENST00000554971 USH2AO75445 5202 aa7.94□□□□□ -1.14
SHOX-204ENST00000554971 LCE2BO14633 110 aa7.84□□□□□ -1.15
SHOX-204ENST00000554971 SSPOA2VEC9 5147 aa7.81□□□□□ -1.16
SHOX-204ENST00000554971 C10orf95Q9H7T3 257 aa7.8□□□□□ -1.16
SHOX-204ENST00000554971 KRTAP19-1Q8IUB9 90 aa7.74□□□□□ -1.17
SHOX-204ENST00000554971 SPRR2GQ9BYE4 73 aa7.67□□□□□ -1.18
SHOX-204ENST00000554971 CRCT1Q9UGL9 99 aa7.67□□□□□ -1.18
SHOX-204ENST00000554971 H3BS24 57 aa7.66□□□□□ -1.18
SHOX-204ENST00000554971 KRTAP9-6A0A140TA67 174 aa7.62□□□□□ -1.19
SHOX-204ENST00000554971 CAMK2N1Q7Z7J9 78 aa7.59□□□□□ -1.19
SHOX-204ENST00000554971 PP632Q6XCG6 107 aa7.56□□□□□ -1.2
SHOX-204ENST00000554971 KRTAP19-8Q3LI54 63 aa7.55□□□□□ -1.2
SHOX-204ENST00000554971 KRTAP15-1Q3LI76 137 aa7.54□□□□□ -1.2
SHOX-204ENST00000554971 FCGBPQ9Y6R7 5405 aaPredicted RBP7.53□□□□□ -1.2
SHOX-204ENST00000554971 MT1BP07438 61 aa7.53□□□□□ -1.2
SHOX-204ENST00000554971 KRTAP19-6Q3LI70 58 aa7.45□□□□□ -1.22
SHOX-204ENST00000554971 KRTAP23-1A1A580 65 aa7.42□□□□□ -1.22
SHOX-204ENST00000554971 TNP1P09430 55 aa7.37□□□□□ -1.23
SHOX-204ENST00000554971 PLAC4Q8WY50 150 aa7.33□□□□□ -1.24
SHOX-204ENST00000554971 KRTAP10-5P60370 271 aa7.23□□□□□ -1.25
SHOX-204ENST00000554971 MACF1Q9UPN3 7388 aaKnown RBP7.22□□□□□ -1.25
SHOX-204ENST00000554971 NDUFAF8A1L188 74 aa7.19□□□□□ -1.26
SHOX-204ENST00000554971 MT1XP80297 61 aa7.17□□□□□ -1.26
SHOX-204ENST00000554971 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.14□□□□□ -1.27
SHOX-204ENST00000554971 SYNE2Q8WXH0 6885 aaKnown RBP7.09□□□□□ -1.27
SHOX-204ENST00000554971 KMT2DO14686 5537 aa7.05□□□□□ -1.28
SHOX-204ENST00000554971 PRO2289Q9P1D8 64 aa7.03□□□□□ -1.28
SHOX-204ENST00000554971 LUZP6Q538Z0 58 aa6.99□□□□□ -1.29
SHOX-204ENST00000554971 KRTAP9-7A8MTY7 169 aa6.91□□□□□ -1.3
SHOX-204ENST00000554971 SPRR5A0A1B0GTR4 108 aa6.9□□□□□ -1.3
SHOX-204ENST00000554971 LCE3AQ5TA76 89 aa6.86□□□□□ -1.31
SHOX-204ENST00000554971 A0A0A0MQY5 61 aa6.86□□□□□ -1.31
SHOX-204ENST00000554971 KRTAP10-7P60409 375 aaPredicted RBP6.86□□□□□ -1.31
SHOX-204ENST00000554971 KRTAP8-1Q8IUC2 63 aa6.84□□□□□ -1.32
SHOX-204ENST00000554971 MUC12Q9UKN1 5478 aa6.81□□□□□ -1.32
SHOX-204ENST00000554971 KRTAP10-12P60413 245 aa6.79□□□□□ -1.32
SHOX-204ENST00000554971 KRTAP6-3Q3LI67 103 aa6.78□□□□□ -1.32
SHOX-204ENST00000554971 KRTAP4-8A0A0G2JLE6 195 aa6.75□□□□□ -1.33
SHOX-204ENST00000554971 KRTAP4-8Q9BYQ9 185 aa6.75□□□□□ -1.33
SHOX-204ENST00000554971 MDN1Q9NU22 5596 aa6.7□□□□□ -1.34
SHOX-204ENST00000554971 KRTAP5-9P26371 169 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms