RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 MT-ATP8P03928 68 aa12.05□□□□□ -0.48
CPSF6-205ENST00000550075 KLKP1Q107X0 134 aa12.04□□□□□ -0.48
CPSF6-205ENST00000550075 KRTAP3-3Q9BYR6 98 aa11.98□□□□□ -0.49
CPSF6-205ENST00000550075 SSPOA2VEC9 5147 aa11.97□□□□□ -0.49
CPSF6-205ENST00000550075 NDUFC1O43677 76 aa11.95□□□□□ -0.5
CPSF6-205ENST00000550075 SMIM20Q8N5G0 67 aa11.95□□□□□ -0.5
CPSF6-205ENST00000550075 TRAV7A0A075B6U4 112 aa11.87□□□□□ -0.51
CPSF6-205ENST00000550075 KRTAP19-1Q8IUB9 90 aa11.86□□□□□ -0.51
CPSF6-205ENST00000550075 DMAC1Q96GE9 116 aa11.78□□□□□ -0.52
CPSF6-205ENST00000550075 H0YAA0 97 aa11.75□□□□□ -0.53
CPSF6-205ENST00000550075 KRTAP19-6Q3LI70 58 aa11.74□□□□□ -0.53
CPSF6-205ENST00000550075 FCGBPQ9Y6R7 5405 aaPredicted RBP11.72□□□□□ -0.53
CPSF6-205ENST00000550075 CRIPTQ9P021 101 aa11.72□□□□□ -0.53
CPSF6-205ENST00000550075 SPRR2GQ9BYE4 73 aa11.71□□□□□ -0.53
CPSF6-205ENST00000550075 Q5VV11 94 aa11.62□□□□□ -0.55
CPSF6-205ENST00000550075 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.6□□□□□ -0.55
CPSF6-205ENST00000550075 ADM2Q7Z4H4 148 aa11.59□□□□□ -0.55
CPSF6-205ENST00000550075 KRTAP19-8Q3LI54 63 aa11.58□□□□□ -0.56
CPSF6-205ENST00000550075 ACYP2P14621 99 aa11.57□□□□□ -0.56
CPSF6-205ENST00000550075 SERP2Q8N6R1 65 aa11.57□□□□□ -0.56
CPSF6-205ENST00000550075 SNURFQ9Y675 71 aa11.56□□□□□ -0.56
CPSF6-205ENST00000550075 MT1BP07438 61 aa11.52□□□□□ -0.57
CPSF6-205ENST00000550075 C20orf197Q8N268 126 aa11.5□□□□□ -0.57
CPSF6-205ENST00000550075 SPTSSBQ8NFR3 76 aa11.45□□□□□ -0.58
CPSF6-205ENST00000550075 SPANXA2-OT1Q8N9U9 137 aa11.42□□□□□ -0.58
CPSF6-205ENST00000550075 CHKB-CPT1BH3BT56 60 aa11.4□□□□□ -0.58
CPSF6-205ENST00000550075 KRTAP9-7A8MTY7 169 aa11.38□□□□□ -0.59
CPSF6-205ENST00000550075 A6NN06 94 aa11.36□□□□□ -0.59
CPSF6-205ENST00000550075 P0C880 135 aa11.33□□□□□ -0.6
CPSF6-205ENST00000550075 R4GN34 69 aa11.33□□□□□ -0.6
CPSF6-205ENST00000550075 COX7CP15954 63 aa11.28□□□□□ -0.6
CPSF6-205ENST00000550075 KRTAP3-2Q9BYR7 98 aa11.25□□□□□ -0.61
CPSF6-205ENST00000550075 MACF1Q9UPN3 7388 aaKnown RBP11.24□□□□□ -0.61
CPSF6-205ENST00000550075 M0QZ58 72 aa11.24□□□□□ -0.61
CPSF6-205ENST00000550075 KRTAP10-5P60370 271 aa11.23□□□□□ -0.61
CPSF6-205ENST00000550075 PLAC4Q8WY50 150 aa11.13□□□□□ -0.63
CPSF6-205ENST00000550075 COA5Q86WW8 74 aa11.07□□□□□ -0.64
CPSF6-205ENST00000550075 ANAPC13Q9BS18 74 aa11.06□□□□□ -0.64
CPSF6-205ENST00000550075 LINC01554Q52M75 96 aa11.05□□□□□ -0.64
CPSF6-205ENST00000550075 PRO2289Q9P1D8 64 aa11.03□□□□□ -0.64
CPSF6-205ENST00000550075 SYNE2Q8WXH0 6885 aaKnown RBP11.02□□□□□ -0.64
CPSF6-205ENST00000550075 H7BZZ5 65 aa11.02□□□□□ -0.65
CPSF6-205ENST00000550075 CYSTM1Q9H1C7 97 aa10.97□□□□□ -0.65
CPSF6-205ENST00000550075 KRTAP6-3Q3LI67 103 aa10.96□□□□□ -0.65
CPSF6-205ENST00000550075 MT1XP80297 61 aa10.88□□□□□ -0.67
CPSF6-205ENST00000550075 SEC61GP60059 68 aa10.84□□□□□ -0.67
CPSF6-205ENST00000550075 SERP1Q9Y6X1 66 aa10.8□□□□□ -0.68
CPSF6-205ENST00000550075 CCDC179H3BU77 68 aa10.76□□□□□ -0.69
CPSF6-205ENST00000550075 ATP5EP56381 51 aaPredicted RBP10.68□□□□□ -0.7
CPSF6-205ENST00000550075 KRTAP13-4Q3LI77 160 aa10.68□□□□□ -0.7
CPSF6-205ENST00000550075 KRTAP12-2P59991 146 aa10.62□□□□□ -0.71
CPSF6-205ENST00000550075 KRTAP5-9P26371 169 aa10.58□□□□□ -0.72
CPSF6-205ENST00000550075 A0A1B0GU33 70 aa10.55□□□□□ -0.72
CPSF6-205ENST00000550075 A0A1B0GU69 56 aa10.53□□□□□ -0.72
CPSF6-205ENST00000550075 CAMK2N1Q7Z7J9 78 aa10.49□□□□□ -0.73
CPSF6-205ENST00000550075 TMEM258P61165 79 aa10.46□□□□□ -0.73
CPSF6-205ENST00000550075 MUC12Q9UKN1 5478 aa10.45□□□□□ -0.74
CPSF6-205ENST00000550075 A0A0D9SG42 100 aa10.45□□□□□ -0.74
CPSF6-205ENST00000550075 SPATA8Q6RVD6 105 aa10.45□□□□□ -0.74
CPSF6-205ENST00000550075 KMT2DO14686 5537 aa10.44□□□□□ -0.74
CPSF6-205ENST00000550075 KRTAP8-1Q8IUC2 63 aa10.43□□□□□ -0.74
CPSF6-205ENST00000550075 NEBP20929 6669 aa10.41□□□□□ -0.74
CPSF6-205ENST00000550075 KRTAP10-7P60409 375 aaPredicted RBP10.37□□□□□ -0.75
CPSF6-205ENST00000550075 SPRR2FQ96RM1 72 aa10.36□□□□□ -0.75
CPSF6-205ENST00000550075 KRTAP10-12P60413 245 aa10.35□□□□□ -0.75
CPSF6-205ENST00000550075 PRR15LQ9BU68 103 aa10.35□□□□□ -0.75
CPSF6-205ENST00000550075 SMIM26A0A096LP01 95 aa10.32□□□□□ -0.76
CPSF6-205ENST00000550075 SPINT4Q6UDR6 99 aa10.3□□□□□ -0.76
CPSF6-205ENST00000550075 MDN1Q9NU22 5596 aa10.28□□□□□ -0.76
CPSF6-205ENST00000550075 KRTAP4-8A0A0G2JLE6 195 aa10.26□□□□□ -0.77
CPSF6-205ENST00000550075 KRTAP4-8Q9BYQ9 185 aa10.26□□□□□ -0.77
CPSF6-205ENST00000550075 KRTAP12-1P59990 96 aa10.22□□□□□ -0.77
CPSF6-205ENST00000550075 LINC01558Q9Y6Z2 57 aa10.22□□□□□ -0.77
CPSF6-205ENST00000550075 SPRR2EP22531 72 aa10.14□□□□□ -0.79
CPSF6-205ENST00000550075 SPRR2BP35325 72 aa10.14□□□□□ -0.79
CPSF6-205ENST00000550075 SPRR2AP35326 72 aa10.14□□□□□ -0.79
CPSF6-205ENST00000550075 A8MU10 97 aa10.12□□□□□ -0.79
CPSF6-205ENST00000550075 KRTAP20-1Q3LI63 56 aa10.03□□□□□ -0.8
CPSF6-205ENST00000550075 LCE1AQ5T7P2 110 aa10□□□□□ -0.81
CPSF6-205ENST00000550075 UQCR11O14957 56 aa9.97□□□□□ -0.81
CPSF6-205ENST00000550075 V9GYY9 64 aa9.88□□□□□ -0.83
CPSF6-205ENST00000550075 KRTAP2-3P0C7H8 128 aa9.84□□□□□ -0.83
CPSF6-205ENST00000550075 KRTAP2-4Q9BYR9 128 aa9.84□□□□□ -0.83
CPSF6-205ENST00000550075 SPRR2DP22532 72 aa9.81□□□□□ -0.84
CPSF6-205ENST00000550075 MIR22HGQ0VDD5 57 aa9.75□□□□□ -0.85
CPSF6-205ENST00000550075 Q1T7F1 81 aa9.75□□□□□ -0.85
CPSF6-205ENST00000550075 TNP1P09430 55 aa9.74□□□□□ -0.85
CPSF6-205ENST00000550075 C10orf95Q9H7T3 257 aa9.72□□□□□ -0.85
CPSF6-205ENST00000550075 PSPHP1O15172 72 aa9.7□□□□□ -0.86
CPSF6-205ENST00000550075 KRTAP19-7Q3SYF9 63 aa9.7□□□□□ -0.86
CPSF6-205ENST00000550075 MT1EP04732 61 aa9.64□□□□□ -0.87
CPSF6-205ENST00000550075 PCP4P48539 62 aa9.63□□□□□ -0.87
CPSF6-205ENST00000550075 K7ERS5 55 aa9.61□□□□□ -0.87
CPSF6-205ENST00000550075 KRTAP19-5Q3LI72 72 aa9.56□□□□□ -0.88
CPSF6-205ENST00000550075 KRTAP2-2Q9BYT5 123 aa9.54□□□□□ -0.88
CPSF6-205ENST00000550075 KRTAP2-1Q9BYU5 128 aa9.54□□□□□ -0.88
CPSF6-205ENST00000550075 LCE3AQ5TA76 89 aa9.51□□□□□ -0.89
CPSF6-205ENST00000550075 KRTAP19-3Q7Z4W3 81 aa9.51□□□□□ -0.89
CPSF6-205ENST00000550075 LCE3BQ5TA77 95 aa9.5□□□□□ -0.89
CPSF6-205ENST00000550075 RPS28P62857 69 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms