RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 KRTAP3-3Q9BYR6 98 aa6.07□□□□□ -1.44
DDX55-213ENST00000545042 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
DDX55-213ENST00000545042 KRTAP19-6Q3LI70 58 aa6.06□□□□□ -1.44
DDX55-213ENST00000545042 NDUFC1O43677 76 aa6.05□□□□□ -1.44
DDX55-213ENST00000545042 H3BPC8 53 aa6.04□□□□□ -1.44
DDX55-213ENST00000545042 KLKP1Q107X0 134 aa6.04□□□□□ -1.44
DDX55-213ENST00000545042 KRTAP9-7A8MTY7 169 aa6.01□□□□□ -1.45
DDX55-213ENST00000545042 K7ERU9 68 aa6.01□□□□□ -1.45
DDX55-213ENST00000545042 IMUPQ9GZP8 106 aa6.01□□□□□ -1.45
DDX55-213ENST00000545042 SPRR2GQ9BYE4 73 aa5.98□□□□□ -1.45
DDX55-213ENST00000545042 CRIPTQ9P021 101 aa5.97□□□□□ -1.45
DDX55-213ENST00000545042 Q5VV11 94 aa5.96□□□□□ -1.46
DDX55-213ENST00000545042 H0YAA0 97 aa5.95□□□□□ -1.46
DDX55-213ENST00000545042 MT-ATP8P03928 68 aa5.94□□□□□ -1.46
DDX55-213ENST00000545042 SMIM20Q8N5G0 67 aa5.93□□□□□ -1.46
DDX55-213ENST00000545042 KRTAP19-8Q3LI54 63 aa5.92□□□□□ -1.46
DDX55-213ENST00000545042 MT1BP07438 61 aa5.9□□□□□ -1.46
DDX55-213ENST00000545042 DMAC1Q96GE9 116 aa5.9□□□□□ -1.46
DDX55-213ENST00000545042 TRAV7A0A075B6U4 112 aa5.89□□□□□ -1.47
DDX55-213ENST00000545042 ADM2Q7Z4H4 148 aa5.89□□□□□ -1.47
DDX55-213ENST00000545042 A6NN06 94 aa5.86□□□□□ -1.47
DDX55-213ENST00000545042 MACF1Q9UPN3 7388 aaKnown RBP5.86□□□□□ -1.47
DDX55-213ENST00000545042 C20orf197Q8N268 126 aa5.82□□□□□ -1.48
DDX55-213ENST00000545042 ACYP2P14621 99 aa5.81□□□□□ -1.48
DDX55-213ENST00000545042 SYNE2Q8WXH0 6885 aaKnown RBP5.79□□□□□ -1.48
DDX55-213ENST00000545042 KRTAP10-5P60370 271 aa5.77□□□□□ -1.49
DDX55-213ENST00000545042 SPTSSBQ8NFR3 76 aa5.76□□□□□ -1.49
DDX55-213ENST00000545042 SNURFQ9Y675 71 aa5.75□□□□□ -1.49
DDX55-213ENST00000545042 R4GN34 69 aa5.75□□□□□ -1.49
DDX55-213ENST00000545042 P0C880 135 aa5.73□□□□□ -1.49
DDX55-213ENST00000545042 CHKB-CPT1BH3BT56 60 aa5.72□□□□□ -1.49
DDX55-213ENST00000545042 KRTAP6-3Q3LI67 103 aa5.71□□□□□ -1.5
DDX55-213ENST00000545042 SERP2Q8N6R1 65 aa5.71□□□□□ -1.5
DDX55-213ENST00000545042 M0QZ58 72 aa5.7□□□□□ -1.5
DDX55-213ENST00000545042 PLAC4Q8WY50 150 aa5.69□□□□□ -1.5
DDX55-213ENST00000545042 SPANXA2-OT1Q8N9U9 137 aa5.68□□□□□ -1.5
DDX55-213ENST00000545042 KRTAP3-2Q9BYR7 98 aa5.68□□□□□ -1.5
DDX55-213ENST00000545042 PRO2289Q9P1D8 64 aa5.65□□□□□ -1.5
DDX55-213ENST00000545042 LINC01554Q52M75 96 aa5.62□□□□□ -1.51
DDX55-213ENST00000545042 MT1XP80297 61 aa5.56□□□□□ -1.52
DDX55-213ENST00000545042 COX7CP15954 63 aa5.55□□□□□ -1.52
DDX55-213ENST00000545042 MUC12Q9UKN1 5478 aa5.54□□□□□ -1.52
DDX55-213ENST00000545042 COA5Q86WW8 74 aa5.51□□□□□ -1.53
DDX55-213ENST00000545042 KRTAP5-9P26371 169 aa5.47□□□□□ -1.53
DDX55-213ENST00000545042 NEBP20929 6669 aa5.45□□□□□ -1.54
DDX55-213ENST00000545042 SEC61GP60059 68 aa5.45□□□□□ -1.54
DDX55-213ENST00000545042 H7BZZ5 65 aa5.44□□□□□ -1.54
DDX55-213ENST00000545042 KRTAP12-2P59991 146 aa5.43□□□□□ -1.54
DDX55-213ENST00000545042 ANAPC13Q9BS18 74 aa5.42□□□□□ -1.54
DDX55-213ENST00000545042 SERP1Q9Y6X1 66 aa5.42□□□□□ -1.54
DDX55-213ENST00000545042 CYSTM1Q9H1C7 97 aa5.4□□□□□ -1.54
DDX55-213ENST00000545042 KRTAP8-1Q8IUC2 63 aa5.38□□□□□ -1.55
DDX55-213ENST00000545042 KRTAP13-4Q3LI77 160 aa5.37□□□□□ -1.55
DDX55-213ENST00000545042 KMT2DO14686 5537 aa5.36□□□□□ -1.55
DDX55-213ENST00000545042 SPRR2FQ96RM1 72 aa5.36□□□□□ -1.55
DDX55-213ENST00000545042 MDN1Q9NU22 5596 aa5.32□□□□□ -1.56
DDX55-213ENST00000545042 CAMK2N1Q7Z7J9 78 aa5.32□□□□□ -1.56
DDX55-213ENST00000545042 KRTAP10-7P60409 375 aaPredicted RBP5.3□□□□□ -1.56
DDX55-213ENST00000545042 A0A1B0GU33 70 aa5.29□□□□□ -1.56
DDX55-213ENST00000545042 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
DDX55-213ENST00000545042 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
DDX55-213ENST00000545042 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
DDX55-213ENST00000545042 A0A0D9SG42 100 aa5.27□□□□□ -1.57
DDX55-213ENST00000545042 CCDC179H3BU77 68 aa5.27□□□□□ -1.57
DDX55-213ENST00000545042 SPRR2EP22531 72 aa5.26□□□□□ -1.57
DDX55-213ENST00000545042 SPRR2BP35325 72 aa5.26□□□□□ -1.57
DDX55-213ENST00000545042 SPRR2AP35326 72 aa5.26□□□□□ -1.57
DDX55-213ENST00000545042 KRTAP20-1Q3LI63 56 aa5.26□□□□□ -1.57
DDX55-213ENST00000545042 SPATA8Q6RVD6 105 aa5.26□□□□□ -1.57
DDX55-213ENST00000545042 A0A1B0GU69 56 aa5.25□□□□□ -1.57
DDX55-213ENST00000545042 ATP5EP56381 51 aaPredicted RBP5.24□□□□□ -1.57
DDX55-213ENST00000545042 SPINT4Q6UDR6 99 aa5.2□□□□□ -1.58
DDX55-213ENST00000545042 SMIM26A0A096LP01 95 aa5.17□□□□□ -1.58
DDX55-213ENST00000545042 LCE1AQ5T7P2 110 aa5.17□□□□□ -1.58
DDX55-213ENST00000545042 KRTAP2-3P0C7H8 128 aa5.15□□□□□ -1.59
DDX55-213ENST00000545042 PRR15LQ9BU68 103 aa5.15□□□□□ -1.59
DDX55-213ENST00000545042 KRTAP2-4Q9BYR9 128 aa5.15□□□□□ -1.59
DDX55-213ENST00000545042 KRTAP12-1P59990 96 aa5.14□□□□□ -1.59
DDX55-213ENST00000545042 TMEM258P61165 79 aa5.11□□□□□ -1.59
DDX55-213ENST00000545042 SPRR2DP22532 72 aa5.09□□□□□ -1.59
DDX55-213ENST00000545042 A8MU10 97 aa5.07□□□□□ -1.6
DDX55-213ENST00000545042 LINC01558Q9Y6Z2 57 aa5.06□□□□□ -1.6
DDX55-213ENST00000545042 KRTAP2-2Q9BYT5 123 aa4.99□□□□□ -1.61
DDX55-213ENST00000545042 KRTAP2-1Q9BYU5 128 aa4.99□□□□□ -1.61
DDX55-213ENST00000545042 UQCR11O14957 56 aa4.95□□□□□ -1.62
DDX55-213ENST00000545042 KRTAP19-7Q3SYF9 63 aa4.95□□□□□ -1.62
DDX55-213ENST00000545042 LCE3BQ5TA77 95 aa4.94□□□□□ -1.62
DDX55-213ENST00000545042 MT1EP04732 61 aa4.93□□□□□ -1.62
DDX55-213ENST00000545042 TNP1P09430 55 aa4.92□□□□□ -1.62
DDX55-213ENST00000545042 C10orf95Q9H7T3 257 aa4.89□□□□□ -1.63
DDX55-213ENST00000545042 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
DDX55-213ENST00000545042 KRTAP19-3Q7Z4W3 81 aa4.88□□□□□ -1.63
DDX55-213ENST00000545042 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
DDX55-213ENST00000545042 V9GYY9 64 aa4.86□□□□□ -1.63
DDX55-213ENST00000545042 MIR22HGQ0VDD5 57 aa4.84□□□□□ -1.63
DDX55-213ENST00000545042 LCE3AQ5TA76 89 aa4.82□□□□□ -1.64
DDX55-213ENST00000545042 K7ERS5 55 aa4.79□□□□□ -1.64
DDX55-213ENST00000545042 MT1GP13640 62 aa4.79□□□□□ -1.64
DDX55-213ENST00000545042 PCP4P48539 62 aa4.79□□□□□ -1.64
DDX55-213ENST00000545042 PSPHP1O15172 72 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms