RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 KRTAP3-1Q9BYR8 98 aa8.43□□□□□ -1.06
LIG1-204ENST00000542460 KRTAP9-6A0A140TA67 174 aa8.42□□□□□ -1.06
LIG1-204ENST00000542460 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
LIG1-204ENST00000542460 KRTAP10-6P60371 365 aaPredicted RBP8.34□□□□□ -1.07
LIG1-204ENST00000542460 SMIM26A0A096LP01 95 aa8.34□□□□□ -1.08
LIG1-204ENST00000542460 LORP23490 312 aaPredicted RBP8.32□□□□□ -1.08
LIG1-204ENST00000542460 SPANXA2-OT1Q8N9U9 137 aa8.32□□□□□ -1.08
LIG1-204ENST00000542460 A8MUN3 132 aa8.31□□□□□ -1.08
LIG1-204ENST00000542460 S4R3F8 94 aa8.29□□□□□ -1.08
LIG1-204ENST00000542460 FSIP2Q5CZC0 6907 aa8.28□□□□□ -1.08
LIG1-204ENST00000542460 LCA10Q71F78 164 aa8.24□□□□□ -1.09
LIG1-204ENST00000542460 DMAC1Q96GE9 116 aa8.22□□□□□ -1.09
LIG1-204ENST00000542460 CRCT1Q9UGL9 99 aa8.2□□□□□ -1.1
LIG1-204ENST00000542460 KRTAP9-8Q9BYQ0 159 aa8.19□□□□□ -1.1
LIG1-204ENST00000542460 CSAG1Q6PB30 78 aa8.18□□□□□ -1.1
LIG1-204ENST00000542460 KRTAP3-3Q9BYR6 98 aa8.16□□□□□ -1.1
LIG1-204ENST00000542460 COA5Q86WW8 74 aa8.13□□□□□ -1.11
LIG1-204ENST00000542460 SVIPQ8NHG7 77 aa8.13□□□□□ -1.11
LIG1-204ENST00000542460 V9GYY9 64 aa8.13□□□□□ -1.11
LIG1-204ENST00000542460 MT2AP02795 61 aa8.12□□□□□ -1.11
LIG1-204ENST00000542460 ACYP2P14621 99 aa8.12□□□□□ -1.11
LIG1-204ENST00000542460 Q1T7F1 81 aa8.07□□□□□ -1.12
LIG1-204ENST00000542460 KRTAP10-10P60014 251 aa8.06□□□□□ -1.12
LIG1-204ENST00000542460 MT1FP04733 61 aa8.05□□□□□ -1.12
LIG1-204ENST00000542460 CHKB-CPT1BH3BT56 60 aa7.98□□□□□ -1.13
LIG1-204ENST00000542460 SPTSSBQ8NFR3 76 aa7.94□□□□□ -1.14
LIG1-204ENST00000542460 H0YAA0 97 aa7.93□□□□□ -1.14
LIG1-204ENST00000542460 KRTAP9-3Q9BYQ3 159 aa7.92□□□□□ -1.14
LIG1-204ENST00000542460 PRO0628Q9UI54 55 aa7.91□□□□□ -1.14
LIG1-204ENST00000542460 PSPHP1O15172 72 aa7.89□□□□□ -1.15
LIG1-204ENST00000542460 PRR15LQ9BU68 103 aa7.88□□□□□ -1.15
LIG1-204ENST00000542460 USH2AO75445 5202 aa7.86□□□□□ -1.15
LIG1-204ENST00000542460 ADM2Q7Z4H4 148 aa7.85□□□□□ -1.15
LIG1-204ENST00000542460 BRK1Q8WUW1 75 aa7.83□□□□□ -1.16
LIG1-204ENST00000542460 LINC01558Q9Y6Z2 57 aa7.83□□□□□ -1.16
LIG1-204ENST00000542460 SSPOA2VEC9 5147 aa7.83□□□□□ -1.16
LIG1-204ENST00000542460 Q5VV11 94 aa7.79□□□□□ -1.16
LIG1-204ENST00000542460 CRIPTQ9P021 101 aa7.78□□□□□ -1.16
LIG1-204ENST00000542460 LCE2BO14633 110 aa7.77□□□□□ -1.17
LIG1-204ENST00000542460 KRTAP19-1Q8IUB9 90 aa7.73□□□□□ -1.17
LIG1-204ENST00000542460 KRTAP3-2Q9BYR7 98 aa7.73□□□□□ -1.17
LIG1-204ENST00000542460 P0C880 135 aa7.73□□□□□ -1.17
LIG1-204ENST00000542460 SPRR2GQ9BYE4 73 aa7.73□□□□□ -1.17
LIG1-204ENST00000542460 A0A1B0GU69 56 aa7.68□□□□□ -1.18
LIG1-204ENST00000542460 A6NED7 52 aa7.67□□□□□ -1.18
LIG1-204ENST00000542460 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.64□□□□□ -1.19
LIG1-204ENST00000542460 R4GN34 69 aa7.62□□□□□ -1.19
LIG1-204ENST00000542460 FCGBPQ9Y6R7 5405 aaPredicted RBP7.62□□□□□ -1.19
LIG1-204ENST00000542460 SEC61GP60059 68 aa7.61□□□□□ -1.19
LIG1-204ENST00000542460 CDC42SE1Q9NRR8 79 aa7.6□□□□□ -1.19
LIG1-204ENST00000542460 KRTAP19-8Q3LI54 63 aa7.59□□□□□ -1.19
LIG1-204ENST00000542460 M0QZ58 72 aa7.57□□□□□ -1.2
LIG1-204ENST00000542460 KRTAP9-7A8MTY7 169 aa7.57□□□□□ -1.2
LIG1-204ENST00000542460 MT1BP07438 61 aa7.52□□□□□ -1.21
LIG1-204ENST00000542460 A8MU10 97 aa7.49□□□□□ -1.21
LIG1-204ENST00000542460 UQCR11O14957 56 aa7.47□□□□□ -1.21
LIG1-204ENST00000542460 LINC01554Q52M75 96 aa7.44□□□□□ -1.22
LIG1-204ENST00000542460 KRTAP19-6Q3LI70 58 aa7.43□□□□□ -1.22
LIG1-204ENST00000542460 MIR22HGQ0VDD5 57 aa7.42□□□□□ -1.22
LIG1-204ENST00000542460 PMAIP1Q13794 54 aa7.42□□□□□ -1.22
LIG1-204ENST00000542460 A0A1B0GU33 70 aa7.42□□□□□ -1.22
LIG1-204ENST00000542460 MACF1Q9UPN3 7388 aaKnown RBP7.41□□□□□ -1.22
LIG1-204ENST00000542460 KRTAP13-4Q3LI77 160 aa7.39□□□□□ -1.23
LIG1-204ENST00000542460 SPATA8Q6RVD6 105 aa7.39□□□□□ -1.23
LIG1-204ENST00000542460 PLAC4Q8WY50 150 aa7.37□□□□□ -1.23
LIG1-204ENST00000542460 SYNE2Q8WXH0 6885 aaKnown RBP7.35□□□□□ -1.23
LIG1-204ENST00000542460 A6NN06 94 aa7.31□□□□□ -1.24
LIG1-204ENST00000542460 KTN1-AS1Q86SY8 53 aa7.28□□□□□ -1.24
LIG1-204ENST00000542460 KRTAP10-5P60370 271 aa7.26□□□□□ -1.25
LIG1-204ENST00000542460 A0A0D9SG42 100 aa7.23□□□□□ -1.25
LIG1-204ENST00000542460 PRO2289Q9P1D8 64 aa7.19□□□□□ -1.26
LIG1-204ENST00000542460 MT1XP80297 61 aa7.17□□□□□ -1.26
LIG1-204ENST00000542460 KRTAP6-3Q3LI67 103 aa7.11□□□□□ -1.27
LIG1-204ENST00000542460 SPINT4Q6UDR6 99 aa7.11□□□□□ -1.27
LIG1-204ENST00000542460 K7ERS5 55 aa7.1□□□□□ -1.27
LIG1-204ENST00000542460 KRTAP12-1P59990 96 aa7.1□□□□□ -1.27
LIG1-204ENST00000542460 CAMK2N1Q7Z7J9 78 aa7.08□□□□□ -1.28
LIG1-204ENST00000542460 KRTAP12-2P59991 146 aa7.05□□□□□ -1.28
LIG1-204ENST00000542460 MUC12Q9UKN1 5478 aa6.94□□□□□ -1.3
LIG1-204ENST00000542460 NEBP20929 6669 aa6.87□□□□□ -1.31
LIG1-204ENST00000542460 PRAC1Q96KF2 57 aa6.85□□□□□ -1.31
LIG1-204ENST00000542460 KRTAP10-7P60409 375 aaPredicted RBP6.84□□□□□ -1.31
LIG1-204ENST00000542460 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
LIG1-204ENST00000542460 ROMO1P60602 79 aa6.8□□□□□ -1.32
LIG1-204ENST00000542460 KRTAP5-9P26371 169 aa6.75□□□□□ -1.33
LIG1-204ENST00000542460 C10orf95Q9H7T3 257 aa6.75□□□□□ -1.33
LIG1-204ENST00000542460 KMT2DO14686 5537 aa6.74□□□□□ -1.33
LIG1-204ENST00000542460 MDN1Q9NU22 5596 aa6.73□□□□□ -1.33
LIG1-204ENST00000542460 KRTAP4-8A0A0G2JLE6 195 aa6.71□□□□□ -1.34
LIG1-204ENST00000542460 KRTAP4-8Q9BYQ9 185 aa6.71□□□□□ -1.34
LIG1-204ENST00000542460 KRTAP8-1Q8IUC2 63 aa6.69□□□□□ -1.34
LIG1-204ENST00000542460 KRTAP25-1Q3LHN0 102 aa6.67□□□□□ -1.34
LIG1-204ENST00000542460 TNP1P09430 55 aa6.66□□□□□ -1.34
LIG1-204ENST00000542460 KRTAP20-1Q3LI63 56 aa6.64□□□□□ -1.35
LIG1-204ENST00000542460 SPRR2FQ96RM1 72 aa6.56□□□□□ -1.36
LIG1-204ENST00000542460 SPRR2EP22531 72 aa6.49□□□□□ -1.37
LIG1-204ENST00000542460 SPRR2BP35325 72 aa6.49□□□□□ -1.37
LIG1-204ENST00000542460 SPRR2AP35326 72 aa6.49□□□□□ -1.37
LIG1-204ENST00000542460 LCE3AQ5TA76 89 aa6.45□□□□□ -1.38
LIG1-204ENST00000542460 KRTAP2-3P0C7H8 128 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms