RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 A0A1B0GVY2 172 aa9.16□□□□□ -0.94
RAB40C-205ENST00000539661 KRTAP10-6P60371 365 aaPredicted RBP9.15□□□□□ -0.95
RAB40C-205ENST00000539661 MYCBP2O75592 4640 aa9.14□□□□□ -0.95
RAB40C-205ENST00000539661 KIAA1109Q2LD37 5005 aa9.12□□□□□ -0.95
RAB40C-205ENST00000539661 HSPG2P98160 4391 aa9.11□□□□□ -0.95
RAB40C-205ENST00000539661 P0C880 135 aa9.11□□□□□ -0.95
RAB40C-205ENST00000539661 KRTAP3-3Q9BYR6 98 aa9.09□□□□□ -0.95
RAB40C-205ENST00000539661 DMBT1Q9UGM3 2413 aaPredicted RBP9.07□□□□□ -0.96
RAB40C-205ENST00000539661 KRTAP10-4P60372 401 aaPredicted RBP9.06□□□□□ -0.96
RAB40C-205ENST00000539661 KRTAP13-4Q3LI77 160 aa9.06□□□□□ -0.96
RAB40C-205ENST00000539661 EPPK1P58107 5090 aaKnown RBP9.06□□□□□ -0.96
RAB40C-205ENST00000539661 KRTAP17-1Q9BYP8 105 aa9.05□□□□□ -0.96
RAB40C-205ENST00000539661 KRTAP3-2Q9BYR7 98 aa9.05□□□□□ -0.96
RAB40C-205ENST00000539661 TPRXLQ17RH7 258 aa9.02□□□□□ -0.96
RAB40C-205ENST00000539661 A0A0D9SG42 100 aa9.01□□□□□ -0.97
RAB40C-205ENST00000539661 TNXBP22105 4242 aa8.98□□□□□ -0.97
RAB40C-205ENST00000539661 SPINT4Q6UDR6 99 aa8.98□□□□□ -0.97
RAB40C-205ENST00000539661 S4R3F8 94 aa8.97□□□□□ -0.97
RAB40C-205ENST00000539661 FAT3Q8TDW7 4589 aa8.96□□□□□ -0.98
RAB40C-205ENST00000539661 RYR1P21817 5038 aa8.94□□□□□ -0.98
RAB40C-205ENST00000539661 C10orf95Q9H7T3 257 aa8.85□□□□□ -0.99
RAB40C-205ENST00000539661 KRTAP15-1Q3LI76 137 aa8.84□□□□□ -0.99
RAB40C-205ENST00000539661 LPAP08519 4548 aa8.84□□□□□ -0.99
RAB40C-205ENST00000539661 KRTAP10-8P60410 259 aa8.83□□□□□ -1
RAB40C-205ENST00000539661 KRTAP12-2P59991 146 aa8.82□□□□□ -1
RAB40C-205ENST00000539661 Q5VSD8 79 aa8.81□□□□□ -1
RAB40C-205ENST00000539661 ABCA13Q86UQ4 5058 aa8.8□□□□□ -1
RAB40C-205ENST00000539661 J3QL48 77 aa8.79□□□□□ -1
RAB40C-205ENST00000539661 XP32Q5T750 250 aa8.78□□□□□ -1
RAB40C-205ENST00000539661 KRTAP12-1P59990 96 aa8.76□□□□□ -1.01
RAB40C-205ENST00000539661 NDUFAF8A1L188 74 aa8.69□□□□□ -1.02
RAB40C-205ENST00000539661 M0QZ58 72 aa8.69□□□□□ -1.02
RAB40C-205ENST00000539661 LRP2P98164 4655 aa8.69□□□□□ -1.02
RAB40C-205ENST00000539661 KRTAP4-5Q9BYR2 181 aa8.62□□□□□ -1.03
RAB40C-205ENST00000539661 MT1HL1P0DM35 61 aa8.53□□□□□ -1.04
RAB40C-205ENST00000539661 MUC2Q02817 5179 aa8.43□□□□□ -1.06
RAB40C-205ENST00000539661 HERC2O95714 4834 aa8.41□□□□□ -1.06
RAB40C-205ENST00000539661 R4GN34 69 aa8.33□□□□□ -1.08
RAB40C-205ENST00000539661 PLAC4Q8WY50 150 aa8.28□□□□□ -1.08
RAB40C-205ENST00000539661 HERC1Q15751 4861 aa8.25□□□□□ -1.09
RAB40C-205ENST00000539661 PCLOQ9Y6V0 5065 aa8.22□□□□□ -1.09
RAB40C-205ENST00000539661 PP632Q6XCG6 107 aa8.14□□□□□ -1.11
RAB40C-205ENST00000539661 BIRC6Q9NR09 4857 aa8.1□□□□□ -1.11
RAB40C-205ENST00000539661 MUC17Q685J3 4493 aa8.08□□□□□ -1.12
RAB40C-205ENST00000539661 LORP23490 312 aaPredicted RBP8.08□□□□□ -1.12
RAB40C-205ENST00000539661 A0A0A0MQY5 61 aa8.06□□□□□ -1.12
RAB40C-205ENST00000539661 LUZP6Q538Z0 58 aa8.05□□□□□ -1.12
RAB40C-205ENST00000539661 KRTAP4-1Q9BYQ7 146 aa8.03□□□□□ -1.12
RAB40C-205ENST00000539661 SEC61BP60468 96 aaKnown RBP8.02□□□□□ -1.13
RAB40C-205ENST00000539661 FAT4Q6V0I7 4981 aa7.98□□□□□ -1.13
RAB40C-205ENST00000539661 RNF213Q63HN8 5207 aa7.96□□□□□ -1.14
RAB40C-205ENST00000539661 CAMK2N1Q7Z7J9 78 aa7.95□□□□□ -1.14
RAB40C-205ENST00000539661 LCE2DQ5TA82 110 aaPredicted RBP7.94□□□□□ -1.14
RAB40C-205ENST00000539661 HMCN2Q8NDA2 5059 aa7.85□□□□□ -1.15
RAB40C-205ENST00000539661 UBR4Q5T4S7 5183 aa7.83□□□□□ -1.16
RAB40C-205ENST00000539661 KRTAP23-1A1A580 65 aa7.82□□□□□ -1.16
RAB40C-205ENST00000539661 KRTAP19-2Q3LHN2 52 aa7.81□□□□□ -1.16
RAB40C-205ENST00000539661 TNP1P09430 55 aa7.74□□□□□ -1.17
RAB40C-205ENST00000539661 SPRR5A0A1B0GTR4 108 aa7.71□□□□□ -1.18
RAB40C-205ENST00000539661 FLGP20930 4061 aaPredicted RBP7.62□□□□□ -1.19
RAB40C-205ENST00000539661 LCE2CQ5TA81 110 aa7.37□□□□□ -1.23
RAB40C-205ENST00000539661 SPRR2GQ9BYE4 73 aa7.34□□□□□ -1.23
RAB40C-205ENST00000539661 PRO2289Q9P1D8 64 aa7.25□□□□□ -1.25
RAB40C-205ENST00000539661 KRTAP19-1Q8IUB9 90 aa7.24□□□□□ -1.25
RAB40C-205ENST00000539661 LCE3AQ5TA76 89 aa7.23□□□□□ -1.25
RAB40C-205ENST00000539661 M0R2T5 61 aa7.22□□□□□ -1.25
RAB40C-205ENST00000539661 MT1HP80294 61 aa7.17□□□□□ -1.26
RAB40C-205ENST00000539661 INE1O15225 51 aa7.14□□□□□ -1.27
RAB40C-205ENST00000539661 KRTAP8-1Q8IUC2 63 aa7.13□□□□□ -1.27
RAB40C-205ENST00000539661 LCE2AQ5TA79 106 aaPredicted RBP7.11□□□□□ -1.27
RAB40C-205ENST00000539661 LCE2BO14633 110 aa7.09□□□□□ -1.27
RAB40C-205ENST00000539661 USH2AO75445 5202 aa7.06□□□□□ -1.28
RAB40C-205ENST00000539661 MT1FP04733 61 aa7.04□□□□□ -1.28
RAB40C-205ENST00000539661 MT2AP02795 61 aa6.98□□□□□ -1.29
RAB40C-205ENST00000539661 KRTAP10-10P60014 251 aa6.98□□□□□ -1.29
RAB40C-205ENST00000539661 KRTAP9-8Q9BYQ0 159 aa6.97□□□□□ -1.29
RAB40C-205ENST00000539661 KRTAP19-8Q3LI54 63 aa6.97□□□□□ -1.29
RAB40C-205ENST00000539661 KRTAP12-3P60328 96 aa6.9□□□□□ -1.31
RAB40C-205ENST00000539661 KRTAP10-5P60370 271 aa6.88□□□□□ -1.31
RAB40C-205ENST00000539661 KRTAP10-12P60413 245 aa6.85□□□□□ -1.31
RAB40C-205ENST00000539661 MT1XP80297 61 aa6.84□□□□□ -1.31
RAB40C-205ENST00000539661 MT1BP07438 61 aa6.81□□□□□ -1.32
RAB40C-205ENST00000539661 FSIP2Q5CZC0 6907 aa6.77□□□□□ -1.33
RAB40C-205ENST00000539661 KMT2DO14686 5537 aa6.77□□□□□ -1.33
RAB40C-205ENST00000539661 KRTAP10-7P60409 375 aaPredicted RBP6.65□□□□□ -1.34
RAB40C-205ENST00000539661 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.34
RAB40C-205ENST00000539661 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
RAB40C-205ENST00000539661 KRTAP19-5Q3LI72 72 aa6.46□□□□□ -1.38
RAB40C-205ENST00000539661 SSPOA2VEC9 5147 aa6.33□□□□□ -1.4
RAB40C-205ENST00000539661 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP9-6A8MVA2 160 aa6.27□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP2-3P0C7H8 128 aa6.26□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP2-4Q9BYR9 128 aa6.26□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP2-1Q9BYU5 128 aa6.26□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP19-4Q3LI73 84 aa6.22□□□□□ -1.41
RAB40C-205ENST00000539661 KRTAP19-7Q3SYF9 63 aa6.1□□□□□ -1.43
RAB40C-205ENST00000539661 FCGBPQ9Y6R7 5405 aaPredicted RBP6.02□□□□□ -1.45
RAB40C-205ENST00000539661 KRTAP4-7Q9BYR0 210 aa6□□□□□ -1.45
RAB40C-205ENST00000539661 MUC12Q9UKN1 5478 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms