RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 KRTAP3-1Q9BYR8 98 aa6.75□□□□□ -1.33
SFSWAP-208ENST00000539506 TNXBP22105 4242 aa6.75□□□□□ -1.33
SFSWAP-208ENST00000539506 A0A1B0GU33 70 aa6.74□□□□□ -1.33
SFSWAP-208ENST00000539506 A8MUU9 505 aa6.74□□□□□ -1.33
SFSWAP-208ENST00000539506 C20orf166-AS1Q96NR2 134 aa6.74□□□□□ -1.33
SFSWAP-208ENST00000539506 FAT3Q8TDW7 4589 aa6.73□□□□□ -1.33
SFSWAP-208ENST00000539506 HSPG2P98160 4391 aa6.7□□□□□ -1.34
SFSWAP-208ENST00000539506 RYR3Q15413 4870 aa6.69□□□□□ -1.34
SFSWAP-208ENST00000539506 ROMO1P60602 79 aa6.68□□□□□ -1.34
SFSWAP-208ENST00000539506 MYCBP2O75592 4640 aa6.68□□□□□ -1.34
SFSWAP-208ENST00000539506 A0A0D9SG42 100 aa6.66□□□□□ -1.34
SFSWAP-208ENST00000539506 H1FX-AS1Q4G0G2 97 aa6.66□□□□□ -1.34
SFSWAP-208ENST00000539506 KRTAP25-1Q3LHN0 102 aa6.65□□□□□ -1.35
SFSWAP-208ENST00000539506 KRTAP17-1Q9BYP8 105 aa6.61□□□□□ -1.35
SFSWAP-208ENST00000539506 COX6B2Q6YFQ2 88 aa6.61□□□□□ -1.35
SFSWAP-208ENST00000539506 RYR1P21817 5038 aa6.59□□□□□ -1.35
SFSWAP-208ENST00000539506 LCE2AQ5TA79 106 aaPredicted RBP6.59□□□□□ -1.36
SFSWAP-208ENST00000539506 KRTAP10-8P60410 259 aa6.56□□□□□ -1.36
SFSWAP-208ENST00000539506 P0C880 135 aa6.55□□□□□ -1.36
SFSWAP-208ENST00000539506 KIAA1109Q2LD37 5005 aa6.53□□□□□ -1.36
SFSWAP-208ENST00000539506 Q5VSD8 79 aa6.52□□□□□ -1.37
SFSWAP-208ENST00000539506 C10orf95Q9H7T3 257 aa6.52□□□□□ -1.37
SFSWAP-208ENST00000539506 KRTAP13-4Q3LI77 160 aa6.52□□□□□ -1.37
SFSWAP-208ENST00000539506 K7ERS5 55 aa6.51□□□□□ -1.37
SFSWAP-208ENST00000539506 LPAP08519 4548 aa6.49□□□□□ -1.37
SFSWAP-208ENST00000539506 XP32Q5T750 250 aa6.44□□□□□ -1.38
SFSWAP-208ENST00000539506 EPPK1P58107 5090 aaKnown RBP6.43□□□□□ -1.38
SFSWAP-208ENST00000539506 SPINT4Q6UDR6 99 aa6.43□□□□□ -1.38
SFSWAP-208ENST00000539506 KRTAP10-6P60371 365 aaPredicted RBP6.43□□□□□ -1.38
SFSWAP-208ENST00000539506 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
SFSWAP-208ENST00000539506 TPRXLQ17RH7 258 aa6.42□□□□□ -1.38
SFSWAP-208ENST00000539506 MT1HL1P0DM35 61 aa6.4□□□□□ -1.38
SFSWAP-208ENST00000539506 LRP2P98164 4655 aa6.39□□□□□ -1.39
SFSWAP-208ENST00000539506 SEC61BP60468 96 aaKnown RBP6.38□□□□□ -1.39
SFSWAP-208ENST00000539506 ABCA13Q86UQ4 5058 aa6.36□□□□□ -1.39
SFSWAP-208ENST00000539506 NDUFAF8A1L188 74 aa6.32□□□□□ -1.4
SFSWAP-208ENST00000539506 KRTAP12-2P59991 146 aa6.31□□□□□ -1.4
SFSWAP-208ENST00000539506 S4R3F8 94 aa6.31□□□□□ -1.4
SFSWAP-208ENST00000539506 LUZP6Q538Z0 58 aa6.29□□□□□ -1.4
SFSWAP-208ENST00000539506 KRTAP4-5Q9BYR2 181 aa6.22□□□□□ -1.41
SFSWAP-208ENST00000539506 LORP23490 312 aaPredicted RBP6.21□□□□□ -1.42
SFSWAP-208ENST00000539506 KRTAP12-1P59990 96 aa6.16□□□□□ -1.42
SFSWAP-208ENST00000539506 KRTAP15-1Q3LI76 137 aa6.1□□□□□ -1.43
SFSWAP-208ENST00000539506 MUC17Q685J3 4493 aa6.1□□□□□ -1.43
SFSWAP-208ENST00000539506 HERC2O95714 4834 aa6.03□□□□□ -1.44
SFSWAP-208ENST00000539506 M0QZ58 72 aa6.03□□□□□ -1.44
SFSWAP-208ENST00000539506 KRTAP4-1Q9BYQ7 146 aa6□□□□□ -1.45
SFSWAP-208ENST00000539506 MUC2Q02817 5179 aa5.98□□□□□ -1.45
SFSWAP-208ENST00000539506 R4GN34 69 aa5.95□□□□□ -1.46
SFSWAP-208ENST00000539506 BIRC6Q9NR09 4857 aa5.95□□□□□ -1.46
SFSWAP-208ENST00000539506 KRTAP19-2Q3LHN2 52 aa5.89□□□□□ -1.47
SFSWAP-208ENST00000539506 HERC1Q15751 4861 aa5.82□□□□□ -1.48
SFSWAP-208ENST00000539506 PLAC4Q8WY50 150 aa5.8□□□□□ -1.48
SFSWAP-208ENST00000539506 PCLOQ9Y6V0 5065 aa5.78□□□□□ -1.48
SFSWAP-208ENST00000539506 FLGP20930 4061 aaPredicted RBP5.75□□□□□ -1.49
SFSWAP-208ENST00000539506 CAMK2N1Q7Z7J9 78 aa5.73□□□□□ -1.49
SFSWAP-208ENST00000539506 HMCN2Q8NDA2 5059 aa5.72□□□□□ -1.49
SFSWAP-208ENST00000539506 FAT4Q6V0I7 4981 aa5.67□□□□□ -1.5
SFSWAP-208ENST00000539506 RNF213Q63HN8 5207 aa5.54□□□□□ -1.52
SFSWAP-208ENST00000539506 UBR4Q5T4S7 5183 aa5.51□□□□□ -1.53
SFSWAP-208ENST00000539506 PP632Q6XCG6 107 aa5.41□□□□□ -1.54
SFSWAP-208ENST00000539506 TNP1P09430 55 aa5.4□□□□□ -1.55
SFSWAP-208ENST00000539506 KRTAP23-1A1A580 65 aa5.39□□□□□ -1.55
SFSWAP-208ENST00000539506 KRTAP19-1Q8IUB9 90 aa5.37□□□□□ -1.55
SFSWAP-208ENST00000539506 MT1HP80294 61 aa5.35□□□□□ -1.55
SFSWAP-208ENST00000539506 PRO2289Q9P1D8 64 aa5.35□□□□□ -1.55
SFSWAP-208ENST00000539506 SPRR2GQ9BYE4 73 aa5.34□□□□□ -1.56
SFSWAP-208ENST00000539506 M0R2T5 61 aa5.29□□□□□ -1.56
SFSWAP-208ENST00000539506 MT1FP04733 61 aa5.28□□□□□ -1.56
SFSWAP-208ENST00000539506 MT2AP02795 61 aa5.26□□□□□ -1.57
SFSWAP-208ENST00000539506 KRTAP9-8Q9BYQ0 159 aa5.25□□□□□ -1.57
SFSWAP-208ENST00000539506 LOC100996750A0A140TA64 210 aa5.22□□□□□ -1.57
SFSWAP-208ENST00000539506 KRTAP4-6Q9BYQ5 205 aa5.22□□□□□ -1.57
SFSWAP-208ENST00000539506 KRTAP10-10P60014 251 aa5.2□□□□□ -1.58
SFSWAP-208ENST00000539506 LCE3AQ5TA76 89 aa5.2□□□□□ -1.58
SFSWAP-208ENST00000539506 SPRR5A0A1B0GTR4 108 aa5.12□□□□□ -1.59
SFSWAP-208ENST00000539506 KRTAP19-8Q3LI54 63 aa5.1□□□□□ -1.59
SFSWAP-208ENST00000539506 MT1BP07438 61 aa5.09□□□□□ -1.59
SFSWAP-208ENST00000539506 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
SFSWAP-208ENST00000539506 MT1XP80297 61 aa5.04□□□□□ -1.6
SFSWAP-208ENST00000539506 KRTAP9-6A0A140TA67 174 aa5.04□□□□□ -1.6
SFSWAP-208ENST00000539506 KRTAP9-3Q9BYQ3 159 aa5.02□□□□□ -1.61
SFSWAP-208ENST00000539506 KMT2DO14686 5537 aa5.01□□□□□ -1.61
SFSWAP-208ENST00000539506 USH2AO75445 5202 aa4.98□□□□□ -1.61
SFSWAP-208ENST00000539506 INE1O15225 51 aa4.97□□□□□ -1.61
SFSWAP-208ENST00000539506 KRTAP8-1Q8IUC2 63 aa4.92□□□□□ -1.62
SFSWAP-208ENST00000539506 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
SFSWAP-208ENST00000539506 KRTAP12-3P60328 96 aa4.87□□□□□ -1.63
SFSWAP-208ENST00000539506 KRTAP10-12P60413 245 aa4.86□□□□□ -1.63
SFSWAP-208ENST00000539506 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.82□□□□□ -1.64
SFSWAP-208ENST00000539506 LCE4AQ5TA78 99 aa4.81□□□□□ -1.64
SFSWAP-208ENST00000539506 KRTAP4-8Q9BYQ9 185 aa4.79□□□□□ -1.64
SFSWAP-208ENST00000539506 KRTAP9-2Q9BYQ4 174 aa4.78□□□□□ -1.64
SFSWAP-208ENST00000539506 KRTAP19-5Q3LI72 72 aa4.68□□□□□ -1.66
SFSWAP-208ENST00000539506 KRTAP4-8A0A0G2JLE6 195 aa4.66□□□□□ -1.66
SFSWAP-208ENST00000539506 LCE3BQ5TA77 95 aa4.63□□□□□ -1.67
SFSWAP-208ENST00000539506 KRTAP9-7A8MTY7 169 aa4.61□□□□□ -1.67
SFSWAP-208ENST00000539506 FSIP2Q5CZC0 6907 aa4.61□□□□□ -1.67
SFSWAP-208ENST00000539506 KRTAP4-7Q9BYR0 210 aa4.6□□□□□ -1.67
SFSWAP-208ENST00000539506 KRTAP9-9Q9BYP9 154 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms