RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 HSPG2P98160 4391 aa10.01□□□□□ -0.81
VPS28-213ENST00000530983 KRTAP10-8P60410 259 aa10□□□□□ -0.81
VPS28-213ENST00000530983 ROMO1P60602 79 aa9.96□□□□□ -0.81
VPS28-213ENST00000530983 Q5VSD8 79 aa9.96□□□□□ -0.82
VPS28-213ENST00000530983 RPL37P61927 97 aaKnown RBP9.93□□□□□ -0.82
VPS28-213ENST00000530983 CRIPTQ9P021 101 aa9.93□□□□□ -0.82
VPS28-213ENST00000530983 KRTAP3-3Q9BYR6 98 aa9.91□□□□□ -0.82
VPS28-213ENST00000530983 XP32Q5T750 250 aa9.89□□□□□ -0.83
VPS28-213ENST00000530983 MYCBP2O75592 4640 aa9.88□□□□□ -0.83
VPS28-213ENST00000530983 K7ERS5 55 aa9.87□□□□□ -0.83
VPS28-213ENST00000530983 DMBT1Q9UGM3 2413 aaPredicted RBP9.87□□□□□ -0.83
VPS28-213ENST00000530983 KRTAP10-6P60371 365 aaPredicted RBP9.85□□□□□ -0.83
VPS28-213ENST00000530983 RYR1P21817 5038 aa9.81□□□□□ -0.84
VPS28-213ENST00000530983 KRTAP17-1Q9BYP8 105 aa9.78□□□□□ -0.84
VPS28-213ENST00000530983 KRTAP3-2Q9BYR7 98 aa9.78□□□□□ -0.84
VPS28-213ENST00000530983 S4R3F8 94 aa9.77□□□□□ -0.85
VPS28-213ENST00000530983 KRTAP13-4Q3LI77 160 aa9.76□□□□□ -0.85
VPS28-213ENST00000530983 RYR3Q15413 4870 aa9.75□□□□□ -0.85
VPS28-213ENST00000530983 P0C880 135 aa9.72□□□□□ -0.85
VPS28-213ENST00000530983 MT1HL1P0DM35 61 aa9.68□□□□□ -0.86
VPS28-213ENST00000530983 KIAA1109Q2LD37 5005 aa9.66□□□□□ -0.86
VPS28-213ENST00000530983 A0A0D9SG42 100 aa9.65□□□□□ -0.87
VPS28-213ENST00000530983 LPAP08519 4548 aa9.63□□□□□ -0.87
VPS28-213ENST00000530983 TPRXLQ17RH7 258 aa9.61□□□□□ -0.87
VPS28-213ENST00000530983 LRP2P98164 4655 aa9.56□□□□□ -0.88
VPS28-213ENST00000530983 C10orf95Q9H7T3 257 aa9.51□□□□□ -0.89
VPS28-213ENST00000530983 SPINT4Q6UDR6 99 aa9.5□□□□□ -0.89
VPS28-213ENST00000530983 KRTAP12-2P59991 146 aa9.44□□□□□ -0.9
VPS28-213ENST00000530983 EPPK1P58107 5090 aaKnown RBP9.39□□□□□ -0.91
VPS28-213ENST00000530983 ABCA13Q86UQ4 5058 aa9.39□□□□□ -0.91
VPS28-213ENST00000530983 KRTAP12-1P59990 96 aa9.37□□□□□ -0.91
VPS28-213ENST00000530983 KRTAP15-1Q3LI76 137 aa9.36□□□□□ -0.91
VPS28-213ENST00000530983 M0QZ58 72 aa9.3□□□□□ -0.92
VPS28-213ENST00000530983 NDUFAF8A1L188 74 aa9.26□□□□□ -0.93
VPS28-213ENST00000530983 KRTAP4-5Q9BYR2 181 aa9.22□□□□□ -0.93
VPS28-213ENST00000530983 MUC17Q685J3 4493 aa9.15□□□□□ -0.94
VPS28-213ENST00000530983 SEC61BP60468 96 aaKnown RBP9.15□□□□□ -0.94
VPS28-213ENST00000530983 R4GN34 69 aa9.07□□□□□ -0.96
VPS28-213ENST00000530983 J3QL48 77 aa9.05□□□□□ -0.96
VPS28-213ENST00000530983 KRTAP4-1Q9BYQ7 146 aa9.04□□□□□ -0.96
VPS28-213ENST00000530983 LORP23490 312 aaPredicted RBP9□□□□□ -0.97
VPS28-213ENST00000530983 BIRC6Q9NR09 4857 aa8.94□□□□□ -0.98
VPS28-213ENST00000530983 KRTAP19-2Q3LHN2 52 aa8.91□□□□□ -0.98
VPS28-213ENST00000530983 HERC2O95714 4834 aa8.9□□□□□ -0.98
VPS28-213ENST00000530983 MUC2Q02817 5179 aa8.77□□□□□ -1.01
VPS28-213ENST00000530983 PLAC4Q8WY50 150 aa8.74□□□□□ -1.01
VPS28-213ENST00000530983 FLGP20930 4061 aaPredicted RBP8.67□□□□□ -1.02
VPS28-213ENST00000530983 PCLOQ9Y6V0 5065 aa8.62□□□□□ -1.03
VPS28-213ENST00000530983 CAMK2N1Q7Z7J9 78 aa8.6□□□□□ -1.03
VPS28-213ENST00000530983 PP632Q6XCG6 107 aa8.55□□□□□ -1.04
VPS28-213ENST00000530983 HERC1Q15751 4861 aa8.45□□□□□ -1.06
VPS28-213ENST00000530983 HMCN2Q8NDA2 5059 aa8.42□□□□□ -1.06
VPS28-213ENST00000530983 LUZP6Q538Z0 58 aa8.4□□□□□ -1.07
VPS28-213ENST00000530983 FAT4Q6V0I7 4981 aa8.34□□□□□ -1.07
VPS28-213ENST00000530983 LCE2CQ5TA81 110 aa8.34□□□□□ -1.08
VPS28-213ENST00000530983 TNP1P09430 55 aa8.29□□□□□ -1.08
VPS28-213ENST00000530983 A0A0A0MQY5 61 aa8.28□□□□□ -1.08
VPS28-213ENST00000530983 KRTAP23-1A1A580 65 aa8.26□□□□□ -1.09
VPS28-213ENST00000530983 SPRR2GQ9BYE4 73 aa8.21□□□□□ -1.09
VPS28-213ENST00000530983 KRTAP19-1Q8IUB9 90 aa8.18□□□□□ -1.1
VPS28-213ENST00000530983 SPRR5A0A1B0GTR4 108 aa8.15□□□□□ -1.1
VPS28-213ENST00000530983 M0R2T5 61 aa8.12□□□□□ -1.11
VPS28-213ENST00000530983 MT1HP80294 61 aa8.09□□□□□ -1.11
VPS28-213ENST00000530983 RNF213Q63HN8 5207 aa8.08□□□□□ -1.12
VPS28-213ENST00000530983 UBR4Q5T4S7 5183 aa8.06□□□□□ -1.12
VPS28-213ENST00000530983 MT1FP04733 61 aa8□□□□□ -1.13
VPS28-213ENST00000530983 MT2AP02795 61 aa7.98□□□□□ -1.13
VPS28-213ENST00000530983 KRTAP10-10P60014 251 aa7.95□□□□□ -1.14
VPS28-213ENST00000530983 KRTAP9-8Q9BYQ0 159 aa7.93□□□□□ -1.14
VPS28-213ENST00000530983 LCE3AQ5TA76 89 aa7.88□□□□□ -1.15
VPS28-213ENST00000530983 KRTAP19-8Q3LI54 63 aa7.83□□□□□ -1.16
VPS28-213ENST00000530983 MT1BP07438 61 aa7.74□□□□□ -1.17
VPS28-213ENST00000530983 KRTAP10-5P60370 271 aa7.72□□□□□ -1.17
VPS28-213ENST00000530983 MT1XP80297 61 aa7.7□□□□□ -1.18
VPS28-213ENST00000530983 KRTAP8-1Q8IUC2 63 aa7.69□□□□□ -1.18
VPS28-213ENST00000530983 KRTAP9-3Q9BYQ3 159 aa7.58□□□□□ -1.2
VPS28-213ENST00000530983 KRTAP10-12P60413 245 aa7.55□□□□□ -1.2
VPS28-213ENST00000530983 PRO2289Q9P1D8 64 aa7.51□□□□□ -1.21
VPS28-213ENST00000530983 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
VPS28-213ENST00000530983 KRTAP12-3P60328 96 aa7.49□□□□□ -1.21
VPS28-213ENST00000530983 INE1O15225 51 aa7.44□□□□□ -1.22
VPS28-213ENST00000530983 LCE2BO14633 110 aa7.28□□□□□ -1.24
VPS28-213ENST00000530983 LCE2AQ5TA79 106 aaPredicted RBP7.24□□□□□ -1.25
VPS28-213ENST00000530983 USH2AO75445 5202 aa7.22□□□□□ -1.25
VPS28-213ENST00000530983 KRTAP19-5Q3LI72 72 aa7.18□□□□□ -1.26
VPS28-213ENST00000530983 KMT2DO14686 5537 aa7.13□□□□□ -1.27
VPS28-213ENST00000530983 LCE3CQ5T5A8 94 aa7.07□□□□□ -1.28
VPS28-213ENST00000530983 KRTAP4-8A0A0G2JLE6 195 aa7.02□□□□□ -1.29
VPS28-213ENST00000530983 KRTAP4-8Q9BYQ9 185 aa7.02□□□□□ -1.29
VPS28-213ENST00000530983 KRTAP19-7Q3SYF9 63 aa6.87□□□□□ -1.31
VPS28-213ENST00000530983 KRTAP9-6A8MVA2 160 aa6.85□□□□□ -1.31
VPS28-213ENST00000530983 KRTAP4-7Q9BYR0 210 aa6.75□□□□□ -1.33
VPS28-213ENST00000530983 SSPOA2VEC9 5147 aa6.71□□□□□ -1.33
VPS28-213ENST00000530983 KRTAP19-4Q3LI73 84 aa6.69□□□□□ -1.34
VPS28-213ENST00000530983 MT1LQ93083 61 aa6.66□□□□□ -1.34
VPS28-213ENST00000530983 MT1EP04732 61 aa6.66□□□□□ -1.34
VPS28-213ENST00000530983 FSIP2Q5CZC0 6907 aa6.63□□□□□ -1.35
VPS28-213ENST00000530983 KRTAP2-3P0C7H8 128 aa6.63□□□□□ -1.35
VPS28-213ENST00000530983 KRTAP2-4Q9BYR9 128 aa6.63□□□□□ -1.35
VPS28-213ENST00000530983 KRTAP2-1Q9BYU5 128 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms