RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ATP5EP2Q5VTU8 51 aa4.82□□□□□ -1.64
CD44-227ENST00000528086 SPRR2GQ9BYE4 73 aa4.8□□□□□ -1.64
CD44-227ENST00000528086 KRTAP4-7Q9BYR0 210 aa4.8□□□□□ -1.64
CD44-227ENST00000528086 TRAV22A0A0B4J277 110 aa4.79□□□□□ -1.64
CD44-227ENST00000528086 KRTAP19-8Q3LI54 63 aa4.79□□□□□ -1.64
CD44-227ENST00000528086 CSAG1Q6PB30 78 aa4.79□□□□□ -1.64
CD44-227ENST00000528086 SYNE2Q8WXH0 6885 aaKnown RBP4.78□□□□□ -1.64
CD44-227ENST00000528086 LOC101927531A0A1B0GV80 90 aa4.75□□□□□ -1.65
CD44-227ENST00000528086 HIST1H4AP62805 103 aaKnown RBP4.75□□□□□ -1.65
CD44-227ENST00000528086 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
CD44-227ENST00000528086 FAM236AA0A1B0GUQ0 79 aa4.74□□□□□ -1.65
CD44-227ENST00000528086 FAM236BA0A1B0GV22 79 aa4.74□□□□□ -1.65
CD44-227ENST00000528086 UQCRQO14949 82 aa4.74□□□□□ -1.65
CD44-227ENST00000528086 LINC00643Q86TS7 51 aa4.74□□□□□ -1.65
CD44-227ENST00000528086 H0Y9P7 68 aa4.73□□□□□ -1.65
CD44-227ENST00000528086 KLKP1Q107X0 134 aa4.72□□□□□ -1.65
CD44-227ENST00000528086 OCR1Q9BZK8 76 aa4.72□□□□□ -1.65
CD44-227ENST00000528086 ATOX1O00244 68 aa4.7□□□□□ -1.66
CD44-227ENST00000528086 KRTAP6-3Q3LI67 103 aa4.69□□□□□ -1.66
CD44-227ENST00000528086 IMUPQ9GZP8 106 aa4.69□□□□□ -1.66
CD44-227ENST00000528086 Q5VV11 94 aa4.68□□□□□ -1.66
CD44-227ENST00000528086 KRTAP10-5P60370 271 aa4.67□□□□□ -1.66
CD44-227ENST00000528086 LINC00208Q96KT6 92 aa4.66□□□□□ -1.66
CD44-227ENST00000528086 KRTAP4-9Q9BYQ8 210 aa4.66□□□□□ -1.66
CD44-227ENST00000528086 A6NN06 94 aa4.64□□□□□ -1.67
CD44-227ENST00000528086 H0YAA0 97 aa4.63□□□□□ -1.67
CD44-227ENST00000528086 MT-ATP8P03928 68 aa4.63□□□□□ -1.67
CD44-227ENST00000528086 SCGB1A1P11684 91 aa4.62□□□□□ -1.67
CD44-227ENST00000528086 KRTAP4-2Q9BYR5 136 aa4.62□□□□□ -1.67
CD44-227ENST00000528086 A8MUN3 132 aa4.61□□□□□ -1.67
CD44-227ENST00000528086 NDUFC1O43677 76 aa4.6□□□□□ -1.67
CD44-227ENST00000528086 CRIPTQ9P021 101 aa4.6□□□□□ -1.67
CD44-227ENST00000528086 H3BPC8 53 aa4.58□□□□□ -1.68
CD44-227ENST00000528086 ADM2Q7Z4H4 148 aa4.58□□□□□ -1.68
CD44-227ENST00000528086 MP68P56378 58 aa4.57□□□□□ -1.68
CD44-227ENST00000528086 MUC12Q9UKN1 5478 aa4.56□□□□□ -1.68
CD44-227ENST00000528086 P0C880 135 aa4.55□□□□□ -1.68
CD44-227ENST00000528086 DMAC1Q96GE9 116 aa4.54□□□□□ -1.68
CD44-227ENST00000528086 MT1XP80297 61 aa4.53□□□□□ -1.68
CD44-227ENST00000528086 SMIM20Q8N5G0 67 aa4.53□□□□□ -1.68
CD44-227ENST00000528086 NEBP20929 6669 aa4.52□□□□□ -1.69
CD44-227ENST00000528086 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
CD44-227ENST00000528086 KMT2DO14686 5537 aa4.51□□□□□ -1.69
CD44-227ENST00000528086 ANAPC13Q9BS18 74 aa4.47□□□□□ -1.69
CD44-227ENST00000528086 TRAV7A0A075B6U4 112 aa4.46□□□□□ -1.7
CD44-227ENST00000528086 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
CD44-227ENST00000528086 SERP2Q8N6R1 65 aa4.45□□□□□ -1.7
CD44-227ENST00000528086 PCP4P48539 62 aa4.43□□□□□ -1.7
CD44-227ENST00000528086 LCE4AQ5TA78 99 aa4.43□□□□□ -1.7
CD44-227ENST00000528086 MDN1Q9NU22 5596 aa4.43□□□□□ -1.7
CD44-227ENST00000528086 COX7CP15954 63 aa4.42□□□□□ -1.7
CD44-227ENST00000528086 M0QZ58 72 aa4.4□□□□□ -1.71
CD44-227ENST00000528086 C20orf197Q8N268 126 aa4.4□□□□□ -1.71
CD44-227ENST00000528086 R4GN34 69 aa4.39□□□□□ -1.71
CD44-227ENST00000528086 KRTAP12-2P59991 146 aa4.36□□□□□ -1.71
CD44-227ENST00000528086 PLAC4Q8WY50 150 aa4.36□□□□□ -1.71
CD44-227ENST00000528086 SNURFQ9Y675 71 aa4.36□□□□□ -1.71
CD44-227ENST00000528086 ACYP2P14621 99 aa4.35□□□□□ -1.71
CD44-227ENST00000528086 SPTSSBQ8NFR3 76 aa4.34□□□□□ -1.71
CD44-227ENST00000528086 PRO2289Q9P1D8 64 aa4.34□□□□□ -1.71
CD44-227ENST00000528086 CCDC179H3BU77 68 aa4.32□□□□□ -1.72
CD44-227ENST00000528086 KRTAP10-7P60409 375 aaPredicted RBP4.32□□□□□ -1.72
CD44-227ENST00000528086 LINC01554Q52M75 96 aa4.32□□□□□ -1.72
CD44-227ENST00000528086 SPRR2FQ96RM1 72 aa4.31□□□□□ -1.72
CD44-227ENST00000528086 KRTAP20-1Q3LI63 56 aa4.3□□□□□ -1.72
CD44-227ENST00000528086 KRTAP13-4Q3LI77 160 aa4.3□□□□□ -1.72
CD44-227ENST00000528086 SPANXA2-OT1Q8N9U9 137 aa4.3□□□□□ -1.72
CD44-227ENST00000528086 KRTAP8-1Q8IUC2 63 aa4.28□□□□□ -1.72
CD44-227ENST00000528086 KRTAP10-12P60413 245 aa4.27□□□□□ -1.73
CD44-227ENST00000528086 LCE1AQ5T7P2 110 aa4.26□□□□□ -1.73
CD44-227ENST00000528086 SPRR2EP22531 72 aa4.25□□□□□ -1.73
CD44-227ENST00000528086 SPRR2BP35325 72 aa4.25□□□□□ -1.73
CD44-227ENST00000528086 SPRR2AP35326 72 aa4.25□□□□□ -1.73
CD44-227ENST00000528086 KRTAP5-3Q6L8H2 238 aa4.25□□□□□ -1.73
CD44-227ENST00000528086 TMEM258P61165 79 aa4.24□□□□□ -1.73
CD44-227ENST00000528086 LCE5AQ5TCM9 118 aa4.24□□□□□ -1.73
CD44-227ENST00000528086 H7BZZ5 65 aa4.23□□□□□ -1.73
CD44-227ENST00000528086 ATP5EP56381 51 aaPredicted RBP4.23□□□□□ -1.73
CD44-227ENST00000528086 CHKB-CPT1BH3BT56 60 aa4.22□□□□□ -1.73
CD44-227ENST00000528086 CYSTM1Q9H1C7 97 aa4.21□□□□□ -1.74
CD44-227ENST00000528086 KRTAP2-3P0C7H8 128 aa4.2□□□□□ -1.74
CD44-227ENST00000528086 KRTAP2-4Q9BYR9 128 aa4.2□□□□□ -1.74
CD44-227ENST00000528086 COA5Q86WW8 74 aa4.17□□□□□ -1.74
CD44-227ENST00000528086 RPS28P62857 69 aaKnown RBP4.13□□□□□ -1.75
CD44-227ENST00000528086 SERP1Q9Y6X1 66 aa4.11□□□□□ -1.75
CD44-227ENST00000528086 SPRR2DP22532 72 aa4.09□□□□□ -1.75
CD44-227ENST00000528086 SPATA8Q6RVD6 105 aa4.07□□□□□ -1.76
CD44-227ENST00000528086 KRTAP2-2Q9BYT5 123 aa4.07□□□□□ -1.76
CD44-227ENST00000528086 KRTAP2-1Q9BYU5 128 aa4.07□□□□□ -1.76
CD44-227ENST00000528086 SEC61GP60059 68 aa4.06□□□□□ -1.76
CD44-227ENST00000528086 KRTAP19-7Q3SYF9 63 aa4.06□□□□□ -1.76
CD44-227ENST00000528086 A0A0D9SG42 100 aa4.03□□□□□ -1.76
CD44-227ENST00000528086 KRTAP12-1P59990 96 aa4.03□□□□□ -1.76
CD44-227ENST00000528086 SMIM26A0A096LP01 95 aa4.02□□□□□ -1.77
CD44-227ENST00000528086 KRTAP19-4Q3LI73 84 aa4.02□□□□□ -1.77
CD44-227ENST00000528086 CAMK2N1Q7Z7J9 78 aa4.01□□□□□ -1.77
CD44-227ENST00000528086 A0A1B0GU33 70 aa3.99□□□□□ -1.77
CD44-227ENST00000528086 MT1EP04732 61 aa3.99□□□□□ -1.77
CD44-227ENST00000528086 V9GYY9 64 aa3.99□□□□□ -1.77
CD44-227ENST00000528086 A8MU10 97 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 199.2 ms