RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 CSAG1Q6PB30 78 aa11.8□□□□□ -0.52
LSM6-202ENST00000502781 FSIP2Q5CZC0 6907 aa11.75□□□□□ -0.53
LSM6-202ENST00000502781 CRCT1Q9UGL9 99 aa11.69□□□□□ -0.54
LSM6-202ENST00000502781 USH2AO75445 5202 aa11.68□□□□□ -0.54
LSM6-202ENST00000502781 LCE2BO14633 110 aa11.67□□□□□ -0.54
LSM6-202ENST00000502781 DMAC1Q96GE9 116 aa11.63□□□□□ -0.55
LSM6-202ENST00000502781 SERP2Q8N6R1 65 aa11.62□□□□□ -0.55
LSM6-202ENST00000502781 NDUFC1O43677 76 aa11.6□□□□□ -0.55
LSM6-202ENST00000502781 SNURFQ9Y675 71 aa11.54□□□□□ -0.56
LSM6-202ENST00000502781 C20orf197Q8N268 126 aa11.5□□□□□ -0.57
LSM6-202ENST00000502781 SSPOA2VEC9 5147 aa11.47□□□□□ -0.57
LSM6-202ENST00000502781 H0YAA0 97 aa11.45□□□□□ -0.58
LSM6-202ENST00000502781 KRTAP19-1Q8IUB9 90 aa11.42□□□□□ -0.58
LSM6-202ENST00000502781 ACYP2P14621 99 aa11.4□□□□□ -0.59
LSM6-202ENST00000502781 COX7CP15954 63 aa11.38□□□□□ -0.59
LSM6-202ENST00000502781 SPANXA2-OT1Q8N9U9 137 aa11.38□□□□□ -0.59
LSM6-202ENST00000502781 SPRR2GQ9BYE4 73 aa11.35□□□□□ -0.59
LSM6-202ENST00000502781 CRIPTQ9P021 101 aa11.3□□□□□ -0.6
LSM6-202ENST00000502781 ADM2Q7Z4H4 148 aa11.27□□□□□ -0.61
LSM6-202ENST00000502781 KRTAP19-8Q3LI54 63 aa11.21□□□□□ -0.61
LSM6-202ENST00000502781 KRTAP19-6Q3LI70 58 aa11.2□□□□□ -0.62
LSM6-202ENST00000502781 ANAPC13Q9BS18 74 aa11.16□□□□□ -0.62
LSM6-202ENST00000502781 FCGBPQ9Y6R7 5405 aaPredicted RBP11.16□□□□□ -0.62
LSM6-202ENST00000502781 CYSTM1Q9H1C7 97 aa11.16□□□□□ -0.62
LSM6-202ENST00000502781 MT1BP07438 61 aa11.15□□□□□ -0.63
LSM6-202ENST00000502781 SPTSSBQ8NFR3 76 aa11.15□□□□□ -0.63
LSM6-202ENST00000502781 CHKB-CPT1BH3BT56 60 aa11.14□□□□□ -0.63
LSM6-202ENST00000502781 H7BZZ5 65 aa11.14□□□□□ -0.63
LSM6-202ENST00000502781 P0C880 135 aa11.11□□□□□ -0.63
LSM6-202ENST00000502781 Q5VV11 94 aa11.1□□□□□ -0.63
LSM6-202ENST00000502781 COA5Q86WW8 74 aa10.99□□□□□ -0.65
LSM6-202ENST00000502781 CCDC179H3BU77 68 aa10.96□□□□□ -0.65
LSM6-202ENST00000502781 R4GN34 69 aa10.95□□□□□ -0.66
LSM6-202ENST00000502781 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.88□□□□□ -0.67
LSM6-202ENST00000502781 M0QZ58 72 aa10.88□□□□□ -0.67
LSM6-202ENST00000502781 A6NN06 94 aa10.78□□□□□ -0.68
LSM6-202ENST00000502781 KRTAP10-5P60370 271 aa10.78□□□□□ -0.68
LSM6-202ENST00000502781 ATP5EP56381 51 aaPredicted RBP10.69□□□□□ -0.7
LSM6-202ENST00000502781 KRTAP9-7A8MTY7 169 aa10.68□□□□□ -0.7
LSM6-202ENST00000502781 PLAC4Q8WY50 150 aa10.67□□□□□ -0.7
LSM6-202ENST00000502781 LINC01554Q52M75 96 aa10.66□□□□□ -0.7
LSM6-202ENST00000502781 MACF1Q9UPN3 7388 aaKnown RBP10.64□□□□□ -0.71
LSM6-202ENST00000502781 SEC61GP60059 68 aa10.59□□□□□ -0.71
LSM6-202ENST00000502781 TMEM258P61165 79 aa10.58□□□□□ -0.72
LSM6-202ENST00000502781 KRTAP13-4Q3LI77 160 aa10.58□□□□□ -0.72
LSM6-202ENST00000502781 SERP1Q9Y6X1 66 aa10.57□□□□□ -0.72
LSM6-202ENST00000502781 MT1XP80297 61 aa10.55□□□□□ -0.72
LSM6-202ENST00000502781 PRO2289Q9P1D8 64 aa10.51□□□□□ -0.73
LSM6-202ENST00000502781 SYNE2Q8WXH0 6885 aaKnown RBP10.47□□□□□ -0.73
LSM6-202ENST00000502781 A0A1B0GU33 70 aa10.41□□□□□ -0.74
LSM6-202ENST00000502781 A0A1B0GU69 56 aa10.39□□□□□ -0.75
LSM6-202ENST00000502781 KRTAP6-3Q3LI67 103 aa10.34□□□□□ -0.75
LSM6-202ENST00000502781 SPATA8Q6RVD6 105 aa10.32□□□□□ -0.76
LSM6-202ENST00000502781 LINC01558Q9Y6Z2 57 aa10.27□□□□□ -0.76
LSM6-202ENST00000502781 A0A0D9SG42 100 aa10.22□□□□□ -0.77
LSM6-202ENST00000502781 KRTAP12-2P59991 146 aa10.22□□□□□ -0.77
LSM6-202ENST00000502781 PRR15LQ9BU68 103 aa10.19□□□□□ -0.78
LSM6-202ENST00000502781 SMIM26A0A096LP01 95 aa10.11□□□□□ -0.79
LSM6-202ENST00000502781 CAMK2N1Q7Z7J9 78 aa10.11□□□□□ -0.79
LSM6-202ENST00000502781 KMT2DO14686 5537 aa10.1□□□□□ -0.79
LSM6-202ENST00000502781 KRTAP12-1P59990 96 aa10.1□□□□□ -0.79
LSM6-202ENST00000502781 KRTAP5-9P26371 169 aa10.08□□□□□ -0.8
LSM6-202ENST00000502781 PCP4P48539 62 aa10.06□□□□□ -0.8
LSM6-202ENST00000502781 KRTAP10-7P60409 375 aaPredicted RBP10.06□□□□□ -0.8
LSM6-202ENST00000502781 SPINT4Q6UDR6 99 aa10.04□□□□□ -0.8
LSM6-202ENST00000502781 KRTAP10-12P60413 245 aa10.03□□□□□ -0.8
LSM6-202ENST00000502781 A8MU10 97 aa10.02□□□□□ -0.8
LSM6-202ENST00000502781 MUC12Q9UKN1 5478 aa9.96□□□□□ -0.82
LSM6-202ENST00000502781 KRTAP4-8A0A0G2JLE6 195 aa9.94□□□□□ -0.82
LSM6-202ENST00000502781 KRTAP4-8Q9BYQ9 185 aa9.94□□□□□ -0.82
LSM6-202ENST00000502781 KRTAP8-1Q8IUC2 63 aa9.92□□□□□ -0.82
LSM6-202ENST00000502781 UQCR11O14957 56 aa9.9□□□□□ -0.82
LSM6-202ENST00000502781 V9GYY9 64 aa9.9□□□□□ -0.82
LSM6-202ENST00000502781 Q1T7F1 81 aa9.89□□□□□ -0.83
LSM6-202ENST00000502781 NEBP20929 6669 aa9.84□□□□□ -0.83
LSM6-202ENST00000502781 LOC100996750A0A140TA64 210 aa9.81□□□□□ -0.84
LSM6-202ENST00000502781 SPRR2FQ96RM1 72 aa9.81□□□□□ -0.84
LSM6-202ENST00000502781 KRTAP4-6Q9BYQ5 205 aa9.81□□□□□ -0.84
LSM6-202ENST00000502781 RPS28P62857 69 aaKnown RBP9.79□□□□□ -0.84
LSM6-202ENST00000502781 PSPHP1O15172 72 aa9.76□□□□□ -0.85
LSM6-202ENST00000502781 MDN1Q9NU22 5596 aa9.76□□□□□ -0.85
LSM6-202ENST00000502781 MIR22HGQ0VDD5 57 aa9.71□□□□□ -0.86
LSM6-202ENST00000502781 C10orf95Q9H7T3 257 aa9.63□□□□□ -0.87
LSM6-202ENST00000502781 SPRR2EP22531 72 aa9.55□□□□□ -0.88
LSM6-202ENST00000502781 SPRR2BP35325 72 aa9.55□□□□□ -0.88
LSM6-202ENST00000502781 SPRR2AP35326 72 aa9.55□□□□□ -0.88
LSM6-202ENST00000502781 LCE1AQ5T7P2 110 aa9.54□□□□□ -0.88
LSM6-202ENST00000502781 TNP1P09430 55 aa9.47□□□□□ -0.89
LSM6-202ENST00000502781 A6NED7 52 aa9.44□□□□□ -0.9
LSM6-202ENST00000502781 KRTAP19-7Q3SYF9 63 aa9.44□□□□□ -0.9
LSM6-202ENST00000502781 K7ERS5 55 aa9.4□□□□□ -0.9
LSM6-202ENST00000502781 KRTAP20-1Q3LI63 56 aa9.38□□□□□ -0.91
LSM6-202ENST00000502781 MT1EP04732 61 aa9.32□□□□□ -0.92
LSM6-202ENST00000502781 LCE3AQ5TA76 89 aa9.29□□□□□ -0.92
LSM6-202ENST00000502781 KRTAP19-5Q3LI72 72 aa9.28□□□□□ -0.92
LSM6-202ENST00000502781 SPRR2DP22532 72 aa9.23□□□□□ -0.93
LSM6-202ENST00000502781 KRTAP2-3P0C7H8 128 aa9.22□□□□□ -0.93
LSM6-202ENST00000502781 KRTAP2-4Q9BYR9 128 aa9.22□□□□□ -0.93
LSM6-202ENST00000502781 KRTAP25-1Q3LHN0 102 aa9.18□□□□□ -0.94
LSM6-202ENST00000502781 CDC42SE1Q9NRR8 79 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms