RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 LCA10Q71F78 164 aa4.41□□□□□ -1.7
VPS13B-206ENST00000496144 A8MU10 97 aa4.41□□□□□ -1.7
VPS13B-206ENST00000496144 A0A1B0GU69 56 aa4.39□□□□□ -1.71
VPS13B-206ENST00000496144 LRP1Q07954 4544 aaKnown RBP4.39□□□□□ -1.71
VPS13B-206ENST00000496144 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
VPS13B-206ENST00000496144 KRTAP3-1Q9BYR8 98 aa4.38□□□□□ -1.71
VPS13B-206ENST00000496144 HERC1Q15751 4861 aa4.38□□□□□ -1.71
VPS13B-206ENST00000496144 SPTSSBQ8NFR3 76 aa4.37□□□□□ -1.71
VPS13B-206ENST00000496144 CSAG1Q6PB30 78 aa4.37□□□□□ -1.71
VPS13B-206ENST00000496144 H1FX-AS1Q4G0G2 97 aa4.36□□□□□ -1.71
VPS13B-206ENST00000496144 KRTAP9-2Q9BYQ4 174 aa4.35□□□□□ -1.71
VPS13B-206ENST00000496144 S4R3F8 94 aa4.35□□□□□ -1.71
VPS13B-206ENST00000496144 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
VPS13B-206ENST00000496144 A6NN06 94 aa4.31□□□□□ -1.72
VPS13B-206ENST00000496144 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
VPS13B-206ENST00000496144 PMAIP1Q13794 54 aa4.29□□□□□ -1.72
VPS13B-206ENST00000496144 SEC61GP60059 68 aa4.28□□□□□ -1.72
VPS13B-206ENST00000496144 MUC17Q685J3 4493 aa4.28□□□□□ -1.72
VPS13B-206ENST00000496144 UQCR11O14957 56 aa4.28□□□□□ -1.72
VPS13B-206ENST00000496144 MIR22HGQ0VDD5 57 aa4.27□□□□□ -1.73
VPS13B-206ENST00000496144 MT1HP80294 61 aa4.26□□□□□ -1.73
VPS13B-206ENST00000496144 KRTAP10-6P60371 365 aaPredicted RBP4.24□□□□□ -1.73
VPS13B-206ENST00000496144 LCE2DQ5TA82 110 aaPredicted RBP4.24□□□□□ -1.73
VPS13B-206ENST00000496144 LPAP08519 4548 aa4.24□□□□□ -1.73
VPS13B-206ENST00000496144 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
VPS13B-206ENST00000496144 CRCT1Q9UGL9 99 aa4.23□□□□□ -1.73
VPS13B-206ENST00000496144 KRTAP3-3Q9BYR6 98 aa4.22□□□□□ -1.73
VPS13B-206ENST00000496144 KRTAP4-1Q9BYQ7 146 aa4.2□□□□□ -1.74
VPS13B-206ENST00000496144 H0YAA0 97 aa4.19□□□□□ -1.74
VPS13B-206ENST00000496144 PLAC4Q8WY50 150 aa4.18□□□□□ -1.74
VPS13B-206ENST00000496144 HMCN2Q8NDA2 5059 aa4.18□□□□□ -1.74
VPS13B-206ENST00000496144 A0A1B0GU33 70 aa4.18□□□□□ -1.74
VPS13B-206ENST00000496144 LCE2AQ5TA79 106 aaPredicted RBP4.16□□□□□ -1.74
VPS13B-206ENST00000496144 CRIPTQ9P021 101 aa4.13□□□□□ -1.75
VPS13B-206ENST00000496144 KRTAP3-2Q9BYR7 98 aa4.12□□□□□ -1.75
VPS13B-206ENST00000496144 PRO2289Q9P1D8 64 aa4.08□□□□□ -1.76
VPS13B-206ENST00000496144 R4GN34 69 aa4.07□□□□□ -1.76
VPS13B-206ENST00000496144 LRP2P98164 4655 aa4.06□□□□□ -1.76
VPS13B-206ENST00000496144 KRTAP13-4Q3LI77 160 aa4.06□□□□□ -1.76
VPS13B-206ENST00000496144 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
VPS13B-206ENST00000496144 LORP23490 312 aaPredicted RBP4.05□□□□□ -1.76
VPS13B-206ENST00000496144 ADM2Q7Z4H4 148 aa4.05□□□□□ -1.76
VPS13B-206ENST00000496144 LINC01554Q52M75 96 aa4.04□□□□□ -1.76
VPS13B-206ENST00000496144 P0C880 135 aa4.03□□□□□ -1.76
VPS13B-206ENST00000496144 PRAC1Q96KF2 57 aa4.03□□□□□ -1.77
VPS13B-206ENST00000496144 LCE2CQ5TA81 110 aa4□□□□□ -1.77
VPS13B-206ENST00000496144 K7ERS5 55 aa3.99□□□□□ -1.77
VPS13B-206ENST00000496144 M0QZ58 72 aa3.99□□□□□ -1.77
VPS13B-206ENST00000496144 KRTAP19-2Q3LHN2 52 aa3.98□□□□□ -1.77
VPS13B-206ENST00000496144 MT2AP02795 61 aa3.97□□□□□ -1.77
VPS13B-206ENST00000496144 A0A0D9SG42 100 aa3.96□□□□□ -1.78
VPS13B-206ENST00000496144 FLGP20930 4061 aaPredicted RBP3.96□□□□□ -1.78
VPS13B-206ENST00000496144 CAMK2N1Q7Z7J9 78 aa3.94□□□□□ -1.78
VPS13B-206ENST00000496144 UBR4Q5T4S7 5183 aa3.94□□□□□ -1.78
VPS13B-206ENST00000496144 KRTAP12-2P59991 146 aa3.93□□□□□ -1.78
VPS13B-206ENST00000496144 ROMO1P60602 79 aa3.92□□□□□ -1.78
VPS13B-206ENST00000496144 KRTAP12-1P59990 96 aa3.9□□□□□ -1.78
VPS13B-206ENST00000496144 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.78
VPS13B-206ENST00000496144 MT1FP04733 61 aa3.88□□□□□ -1.79
VPS13B-206ENST00000496144 KRTAP9-7A8MTY7 169 aa3.88□□□□□ -1.79
VPS13B-206ENST00000496144 KRTAP19-1Q8IUB9 90 aa3.86□□□□□ -1.79
VPS13B-206ENST00000496144 FAT4Q6V0I7 4981 aa3.84□□□□□ -1.79
VPS13B-206ENST00000496144 KRTAP9-8Q9BYQ0 159 aa3.84□□□□□ -1.79
VPS13B-206ENST00000496144 SPINT4Q6UDR6 99 aa3.84□□□□□ -1.8
VPS13B-206ENST00000496144 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.8□□□□□ -1.8
VPS13B-206ENST00000496144 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
VPS13B-206ENST00000496144 KRTAP19-6Q3LI70 58 aa3.73□□□□□ -1.81
VPS13B-206ENST00000496144 C10orf95Q9H7T3 257 aa3.72□□□□□ -1.81
VPS13B-206ENST00000496144 MUC2Q02817 5179 aa3.69□□□□□ -1.82
VPS13B-206ENST00000496144 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
VPS13B-206ENST00000496144 LCE2BO14633 110 aa3.68□□□□□ -1.82
VPS13B-206ENST00000496144 KRTAP8-1Q8IUC2 63 aa3.67□□□□□ -1.82
VPS13B-206ENST00000496144 SPRR2GQ9BYE4 73 aa3.67□□□□□ -1.82
VPS13B-206ENST00000496144 KRTAP10-5P60370 271 aa3.62□□□□□ -1.83
VPS13B-206ENST00000496144 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
VPS13B-206ENST00000496144 KRTAP19-8Q3LI54 63 aa3.61□□□□□ -1.83
VPS13B-206ENST00000496144 SPRR2EP22531 72 aa3.59□□□□□ -1.83
VPS13B-206ENST00000496144 SPRR2BP35325 72 aa3.59□□□□□ -1.83
VPS13B-206ENST00000496144 SPRR2AP35326 72 aa3.59□□□□□ -1.83
VPS13B-206ENST00000496144 SPRR2FQ96RM1 72 aa3.59□□□□□ -1.84
VPS13B-206ENST00000496144 KRTAP15-1Q3LI76 137 aa3.55□□□□□ -1.84
VPS13B-206ENST00000496144 TNP1P09430 55 aa3.54□□□□□ -1.84
VPS13B-206ENST00000496144 PP632Q6XCG6 107 aa3.53□□□□□ -1.84
VPS13B-206ENST00000496144 SPRR2DP22532 72 aa3.5□□□□□ -1.85
VPS13B-206ENST00000496144 KRTAP23-1A1A580 65 aa3.5□□□□□ -1.85
VPS13B-206ENST00000496144 MT1BP07438 61 aa3.5□□□□□ -1.85
VPS13B-206ENST00000496144 KRTAP2-3P0C7H8 128 aa3.46□□□□□ -1.86
VPS13B-206ENST00000496144 KRTAP2-4Q9BYR9 128 aa3.46□□□□□ -1.86
VPS13B-206ENST00000496144 KRTAP10-12P60413 245 aa3.41□□□□□ -1.86
VPS13B-206ENST00000496144 FSIP2Q5CZC0 6907 aa3.39□□□□□ -1.87
VPS13B-206ENST00000496144 MT1XP80297 61 aa3.38□□□□□ -1.87
VPS13B-206ENST00000496144 LCE3AQ5TA76 89 aa3.35□□□□□ -1.87
VPS13B-206ENST00000496144 SSPOA2VEC9 5147 aa3.35□□□□□ -1.87
VPS13B-206ENST00000496144 KRTAP2-2Q9BYT5 123 aa3.3□□□□□ -1.88
VPS13B-206ENST00000496144 KRTAP2-1Q9BYU5 128 aa3.3□□□□□ -1.88
VPS13B-206ENST00000496144 NDUFAF8A1L188 74 aa3.3□□□□□ -1.88
VPS13B-206ENST00000496144 NEBP20929 6669 aa3.3□□□□□ -1.88
VPS13B-206ENST00000496144 H3BS24 57 aa3.29□□□□□ -1.88
VPS13B-206ENST00000496144 LCE3BQ5TA77 95 aa3.29□□□□□ -1.88
VPS13B-206ENST00000496144 USH2AO75445 5202 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms