RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 LCA10Q71F78 164 aa8.18□□□□□ -1.1
HDAC6-235ENST00000495515 MT2AP02795 61 aa8.15□□□□□ -1.1
HDAC6-235ENST00000495515 C20orf197Q8N268 126 aa8.13□□□□□ -1.11
HDAC6-235ENST00000495515 SNURFQ9Y675 71 aa8.13□□□□□ -1.11
HDAC6-235ENST00000495515 KRTAP10-10P60014 251 aa8.12□□□□□ -1.11
HDAC6-235ENST00000495515 NDUFC1O43677 76 aa8.1□□□□□ -1.11
HDAC6-235ENST00000495515 DMAC1Q96GE9 116 aa8.1□□□□□ -1.11
HDAC6-235ENST00000495515 MT1FP04733 61 aa8.08□□□□□ -1.12
HDAC6-235ENST00000495515 COX7CP15954 63 aa8.08□□□□□ -1.12
HDAC6-235ENST00000495515 ACYP2P14621 99 aa8.02□□□□□ -1.13
HDAC6-235ENST00000495515 SPANXA2-OT1Q8N9U9 137 aa8.01□□□□□ -1.13
HDAC6-235ENST00000495515 ANAPC13Q9BS18 74 aa8.01□□□□□ -1.13
HDAC6-235ENST00000495515 KRTAP9-3Q9BYQ3 159 aa7.95□□□□□ -1.14
HDAC6-235ENST00000495515 H0YAA0 97 aa7.9□□□□□ -1.14
HDAC6-235ENST00000495515 CHKB-CPT1BH3BT56 60 aa7.9□□□□□ -1.14
HDAC6-235ENST00000495515 SPTSSBQ8NFR3 76 aa7.89□□□□□ -1.15
HDAC6-235ENST00000495515 H7BZZ5 65 aa7.84□□□□□ -1.15
HDAC6-235ENST00000495515 USH2AO75445 5202 aa7.83□□□□□ -1.16
HDAC6-235ENST00000495515 LCE2BO14633 110 aa7.81□□□□□ -1.16
HDAC6-235ENST00000495515 ADM2Q7Z4H4 148 aa7.81□□□□□ -1.16
HDAC6-235ENST00000495515 CRIPTQ9P021 101 aa7.81□□□□□ -1.16
HDAC6-235ENST00000495515 CYSTM1Q9H1C7 97 aa7.8□□□□□ -1.16
HDAC6-235ENST00000495515 CCDC179H3BU77 68 aa7.79□□□□□ -1.16
HDAC6-235ENST00000495515 SSPOA2VEC9 5147 aa7.79□□□□□ -1.16
HDAC6-235ENST00000495515 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.74□□□□□ -1.17
HDAC6-235ENST00000495515 COA5Q86WW8 74 aa7.74□□□□□ -1.17
HDAC6-235ENST00000495515 KRTAP19-1Q8IUB9 90 aa7.72□□□□□ -1.17
HDAC6-235ENST00000495515 SPRR2GQ9BYE4 73 aa7.72□□□□□ -1.17
HDAC6-235ENST00000495515 KRTAP9-7A8MTY7 169 aa7.68□□□□□ -1.18
HDAC6-235ENST00000495515 ATP5EP56381 51 aaPredicted RBP7.66□□□□□ -1.18
HDAC6-235ENST00000495515 P0C880 135 aa7.64□□□□□ -1.19
HDAC6-235ENST00000495515 Q5VV11 94 aa7.61□□□□□ -1.19
HDAC6-235ENST00000495515 R4GN34 69 aa7.61□□□□□ -1.19
HDAC6-235ENST00000495515 FCGBPQ9Y6R7 5405 aaPredicted RBP7.61□□□□□ -1.19
HDAC6-235ENST00000495515 KRTAP19-8Q3LI54 63 aa7.6□□□□□ -1.19
HDAC6-235ENST00000495515 TMEM258P61165 79 aa7.58□□□□□ -1.2
HDAC6-235ENST00000495515 M0QZ58 72 aa7.55□□□□□ -1.2
HDAC6-235ENST00000495515 SEC61GP60059 68 aa7.54□□□□□ -1.2
HDAC6-235ENST00000495515 MT1BP07438 61 aa7.52□□□□□ -1.21
HDAC6-235ENST00000495515 KRTAP19-6Q3LI70 58 aa7.51□□□□□ -1.21
HDAC6-235ENST00000495515 SERP1Q9Y6X1 66 aa7.5□□□□□ -1.21
HDAC6-235ENST00000495515 MACF1Q9UPN3 7388 aaKnown RBP7.44□□□□□ -1.22
HDAC6-235ENST00000495515 LINC01554Q52M75 96 aa7.42□□□□□ -1.22
HDAC6-235ENST00000495515 PLAC4Q8WY50 150 aa7.4□□□□□ -1.22
HDAC6-235ENST00000495515 A0A1B0GU69 56 aa7.37□□□□□ -1.23
HDAC6-235ENST00000495515 SYNE2Q8WXH0 6885 aaKnown RBP7.36□□□□□ -1.23
HDAC6-235ENST00000495515 A6NN06 94 aa7.36□□□□□ -1.23
HDAC6-235ENST00000495515 PCP4P48539 62 aa7.33□□□□□ -1.24
HDAC6-235ENST00000495515 A0A1B0GU33 70 aa7.32□□□□□ -1.24
HDAC6-235ENST00000495515 KRTAP10-5P60370 271 aa7.3□□□□□ -1.24
HDAC6-235ENST00000495515 PRR15LQ9BU68 103 aa7.3□□□□□ -1.24
HDAC6-235ENST00000495515 KRTAP13-4Q3LI77 160 aa7.27□□□□□ -1.25
HDAC6-235ENST00000495515 PRO2289Q9P1D8 64 aa7.26□□□□□ -1.25
HDAC6-235ENST00000495515 LINC01558Q9Y6Z2 57 aa7.26□□□□□ -1.25
HDAC6-235ENST00000495515 SPATA8Q6RVD6 105 aa7.19□□□□□ -1.26
HDAC6-235ENST00000495515 KRTAP6-3Q3LI67 103 aa7.18□□□□□ -1.26
HDAC6-235ENST00000495515 A0A0D9SG42 100 aa7.15□□□□□ -1.26
HDAC6-235ENST00000495515 SMIM26A0A096LP01 95 aa7.14□□□□□ -1.27
HDAC6-235ENST00000495515 MT1XP80297 61 aa7.14□□□□□ -1.27
HDAC6-235ENST00000495515 V9GYY9 64 aa7.14□□□□□ -1.27
HDAC6-235ENST00000495515 CAMK2N1Q7Z7J9 78 aa7.08□□□□□ -1.28
HDAC6-235ENST00000495515 RPS28P62857 69 aaKnown RBP7.05□□□□□ -1.28
HDAC6-235ENST00000495515 Q1T7F1 81 aa7.05□□□□□ -1.28
HDAC6-235ENST00000495515 SPINT4Q6UDR6 99 aa7.05□□□□□ -1.28
HDAC6-235ENST00000495515 UQCR11O14957 56 aa7.04□□□□□ -1.28
HDAC6-235ENST00000495515 A8MU10 97 aa6.99□□□□□ -1.29
HDAC6-235ENST00000495515 KRTAP12-1P59990 96 aa6.99□□□□□ -1.29
HDAC6-235ENST00000495515 PSPHP1O15172 72 aa6.96□□□□□ -1.3
HDAC6-235ENST00000495515 KRTAP12-2P59991 146 aa6.94□□□□□ -1.3
HDAC6-235ENST00000495515 NEBP20929 6669 aa6.94□□□□□ -1.3
HDAC6-235ENST00000495515 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.3
HDAC6-235ENST00000495515 MUC12Q9UKN1 5478 aa6.87□□□□□ -1.31
HDAC6-235ENST00000495515 KRTAP10-7P60409 375 aaPredicted RBP6.82□□□□□ -1.32
HDAC6-235ENST00000495515 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
HDAC6-235ENST00000495515 KRTAP5-9P26371 169 aa6.8□□□□□ -1.32
HDAC6-235ENST00000495515 A6NED7 52 aa6.79□□□□□ -1.32
HDAC6-235ENST00000495515 K7ERS5 55 aa6.77□□□□□ -1.33
HDAC6-235ENST00000495515 KRTAP8-1Q8IUC2 63 aa6.75□□□□□ -1.33
HDAC6-235ENST00000495515 KRTAP20-1Q3LI63 56 aa6.73□□□□□ -1.33
HDAC6-235ENST00000495515 KRTAP4-8A0A0G2JLE6 195 aa6.7□□□□□ -1.34
HDAC6-235ENST00000495515 KRTAP4-8Q9BYQ9 185 aa6.7□□□□□ -1.34
HDAC6-235ENST00000495515 KMT2DO14686 5537 aa6.69□□□□□ -1.34
HDAC6-235ENST00000495515 SPRR2FQ96RM1 72 aa6.64□□□□□ -1.35
HDAC6-235ENST00000495515 C10orf95Q9H7T3 257 aa6.64□□□□□ -1.35
HDAC6-235ENST00000495515 TNP1P09430 55 aa6.63□□□□□ -1.35
HDAC6-235ENST00000495515 MDN1Q9NU22 5596 aa6.62□□□□□ -1.35
HDAC6-235ENST00000495515 CDC42SE1Q9NRR8 79 aa6.56□□□□□ -1.36
HDAC6-235ENST00000495515 SPRR2EP22531 72 aa6.53□□□□□ -1.36
HDAC6-235ENST00000495515 SPRR2BP35325 72 aa6.53□□□□□ -1.36
HDAC6-235ENST00000495515 SPRR2AP35326 72 aa6.53□□□□□ -1.36
HDAC6-235ENST00000495515 KRTAP2-3P0C7H8 128 aa6.49□□□□□ -1.37
HDAC6-235ENST00000495515 KRTAP2-4Q9BYR9 128 aa6.49□□□□□ -1.37
HDAC6-235ENST00000495515 KRTAP25-1Q3LHN0 102 aa6.44□□□□□ -1.38
HDAC6-235ENST00000495515 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
HDAC6-235ENST00000495515 LCE3AQ5TA76 89 aa6.39□□□□□ -1.39
HDAC6-235ENST00000495515 KRTAP19-7Q3SYF9 63 aa6.38□□□□□ -1.39
HDAC6-235ENST00000495515 KRTAP19-5Q3LI72 72 aa6.34□□□□□ -1.39
HDAC6-235ENST00000495515 MT1EP04732 61 aa6.32□□□□□ -1.4
HDAC6-235ENST00000495515 ROMO1P60602 79 aa6.32□□□□□ -1.4
HDAC6-235ENST00000495515 SPRR2DP22532 72 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms