RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 A8MUN3 132 aa7.57□□□□□ -1.2
MSH5-SAPCD1-206ENST00000491552 KRTAP3-3Q9BYR6 98 aa7.57□□□□□ -1.2
MSH5-SAPCD1-206ENST00000491552 USH2AO75445 5202 aa7.54□□□□□ -1.2
MSH5-SAPCD1-206ENST00000491552 SMIM20Q8N5G0 67 aa7.54□□□□□ -1.2
MSH5-SAPCD1-206ENST00000491552 TRAV7A0A075B6U4 112 aa7.52□□□□□ -1.21
MSH5-SAPCD1-206ENST00000491552 NDUFC1O43677 76 aa7.49□□□□□ -1.21
MSH5-SAPCD1-206ENST00000491552 DMAC1Q96GE9 116 aa7.44□□□□□ -1.22
MSH5-SAPCD1-206ENST00000491552 SSPOA2VEC9 5147 aa7.41□□□□□ -1.22
MSH5-SAPCD1-206ENST00000491552 KRTAP19-1Q8IUB9 90 aa7.4□□□□□ -1.22
MSH5-SAPCD1-206ENST00000491552 H0YAA0 97 aa7.37□□□□□ -1.23
MSH5-SAPCD1-206ENST00000491552 SERP2Q8N6R1 65 aa7.35□□□□□ -1.23
MSH5-SAPCD1-206ENST00000491552 SPRR2GQ9BYE4 73 aa7.34□□□□□ -1.23
MSH5-SAPCD1-206ENST00000491552 SNURFQ9Y675 71 aa7.34□□□□□ -1.23
MSH5-SAPCD1-206ENST00000491552 KRTAP19-6Q3LI70 58 aa7.31□□□□□ -1.24
MSH5-SAPCD1-206ENST00000491552 CRIPTQ9P021 101 aa7.31□□□□□ -1.24
MSH5-SAPCD1-206ENST00000491552 ACYP2P14621 99 aa7.3□□□□□ -1.24
MSH5-SAPCD1-206ENST00000491552 ADM2Q7Z4H4 148 aa7.3□□□□□ -1.24
MSH5-SAPCD1-206ENST00000491552 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
MSH5-SAPCD1-206ENST00000491552 KRTAP19-8Q3LI54 63 aa7.26□□□□□ -1.25
MSH5-SAPCD1-206ENST00000491552 Q5VV11 94 aa7.26□□□□□ -1.25
MSH5-SAPCD1-206ENST00000491552 FCGBPQ9Y6R7 5405 aaPredicted RBP7.23□□□□□ -1.25
MSH5-SAPCD1-206ENST00000491552 MT1BP07438 61 aa7.23□□□□□ -1.25
MSH5-SAPCD1-206ENST00000491552 SPANXA2-OT1Q8N9U9 137 aa7.22□□□□□ -1.25
MSH5-SAPCD1-206ENST00000491552 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.2□□□□□ -1.26
MSH5-SAPCD1-206ENST00000491552 COX7CP15954 63 aa7.18□□□□□ -1.26
MSH5-SAPCD1-206ENST00000491552 SPTSSBQ8NFR3 76 aa7.18□□□□□ -1.26
MSH5-SAPCD1-206ENST00000491552 CHKB-CPT1BH3BT56 60 aa7.17□□□□□ -1.26
MSH5-SAPCD1-206ENST00000491552 P0C880 135 aa7.15□□□□□ -1.26
MSH5-SAPCD1-206ENST00000491552 KRTAP3-2Q9BYR7 98 aa7.12□□□□□ -1.27
MSH5-SAPCD1-206ENST00000491552 R4GN34 69 aa7.1□□□□□ -1.27
MSH5-SAPCD1-206ENST00000491552 A6NN06 94 aa7.08□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 M0QZ58 72 aa7.05□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 KRTAP9-7A8MTY7 169 aa7.04□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 ANAPC13Q9BS18 74 aa7.04□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 KRTAP10-5P60370 271 aa7.03□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 CYSTM1Q9H1C7 97 aa7.03□□□□□ -1.28
MSH5-SAPCD1-206ENST00000491552 H7BZZ5 65 aa7.02□□□□□ -1.29
MSH5-SAPCD1-206ENST00000491552 COA5Q86WW8 74 aa7.01□□□□□ -1.29
MSH5-SAPCD1-206ENST00000491552 MACF1Q9UPN3 7388 aaKnown RBP6.99□□□□□ -1.29
MSH5-SAPCD1-206ENST00000491552 PLAC4Q8WY50 150 aa6.95□□□□□ -1.3
MSH5-SAPCD1-206ENST00000491552 LINC01554Q52M75 96 aa6.93□□□□□ -1.3
MSH5-SAPCD1-206ENST00000491552 CCDC179H3BU77 68 aa6.89□□□□□ -1.31
MSH5-SAPCD1-206ENST00000491552 PRO2289Q9P1D8 64 aa6.86□□□□□ -1.31
MSH5-SAPCD1-206ENST00000491552 SYNE2Q8WXH0 6885 aaKnown RBP6.86□□□□□ -1.31
MSH5-SAPCD1-206ENST00000491552 MT1XP80297 61 aa6.83□□□□□ -1.32
MSH5-SAPCD1-206ENST00000491552 SEC61GP60059 68 aa6.82□□□□□ -1.32
MSH5-SAPCD1-206ENST00000491552 KRTAP6-3Q3LI67 103 aa6.8□□□□□ -1.32
MSH5-SAPCD1-206ENST00000491552 SERP1Q9Y6X1 66 aa6.79□□□□□ -1.32
MSH5-SAPCD1-206ENST00000491552 ATP5EP56381 51 aaPredicted RBP6.77□□□□□ -1.33
MSH5-SAPCD1-206ENST00000491552 KRTAP13-4Q3LI77 160 aa6.77□□□□□ -1.33
MSH5-SAPCD1-206ENST00000491552 A0A1B0GU33 70 aa6.66□□□□□ -1.34
MSH5-SAPCD1-206ENST00000491552 TMEM258P61165 79 aa6.66□□□□□ -1.34
MSH5-SAPCD1-206ENST00000491552 A0A1B0GU69 56 aa6.65□□□□□ -1.34
MSH5-SAPCD1-206ENST00000491552 KRTAP12-2P59991 146 aa6.63□□□□□ -1.35
MSH5-SAPCD1-206ENST00000491552 SPATA8Q6RVD6 105 aa6.62□□□□□ -1.35
MSH5-SAPCD1-206ENST00000491552 A0A0D9SG42 100 aa6.6□□□□□ -1.35
MSH5-SAPCD1-206ENST00000491552 KRTAP5-9P26371 169 aa6.58□□□□□ -1.36
MSH5-SAPCD1-206ENST00000491552 CAMK2N1Q7Z7J9 78 aa6.56□□□□□ -1.36
MSH5-SAPCD1-206ENST00000491552 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
MSH5-SAPCD1-206ENST00000491552 PRR15LQ9BU68 103 aa6.52□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 LINC01558Q9Y6Z2 57 aa6.5□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 KMT2DO14686 5537 aa6.5□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 KRTAP10-12P60413 245 aa6.49□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 SPINT4Q6UDR6 99 aa6.49□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 SMIM26A0A096LP01 95 aa6.48□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 KRTAP12-1P59990 96 aa6.47□□□□□ -1.37
MSH5-SAPCD1-206ENST00000491552 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 SPRR2FQ96RM1 72 aa6.45□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 KRTAP4-8Q9BYQ9 185 aa6.45□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 MUC12Q9UKN1 5478 aa6.44□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 NEBP20929 6669 aa6.43□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 A8MU10 97 aa6.42□□□□□ -1.38
MSH5-SAPCD1-206ENST00000491552 SPRR2EP22531 72 aa6.31□□□□□ -1.4
MSH5-SAPCD1-206ENST00000491552 SPRR2BP35325 72 aa6.31□□□□□ -1.4
MSH5-SAPCD1-206ENST00000491552 SPRR2AP35326 72 aa6.31□□□□□ -1.4
MSH5-SAPCD1-206ENST00000491552 MDN1Q9NU22 5596 aa6.31□□□□□ -1.4
MSH5-SAPCD1-206ENST00000491552 UQCR11O14957 56 aa6.3□□□□□ -1.4
MSH5-SAPCD1-206ENST00000491552 V9GYY9 64 aa6.26□□□□□ -1.41
MSH5-SAPCD1-206ENST00000491552 LCE1AQ5T7P2 110 aa6.24□□□□□ -1.41
MSH5-SAPCD1-206ENST00000491552 PCP4P48539 62 aa6.21□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 Q1T7F1 81 aa6.21□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 KRTAP20-1Q3LI63 56 aa6.2□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 PSPHP1O15172 72 aa6.18□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
MSH5-SAPCD1-206ENST00000491552 TNP1P09430 55 aa6.1□□□□□ -1.43
MSH5-SAPCD1-206ENST00000491552 SPRR2DP22532 72 aa6.1□□□□□ -1.43
MSH5-SAPCD1-206ENST00000491552 KRTAP19-7Q3SYF9 63 aa6.1□□□□□ -1.43
MSH5-SAPCD1-206ENST00000491552 KRTAP2-3P0C7H8 128 aa6.09□□□□□ -1.43
MSH5-SAPCD1-206ENST00000491552 KRTAP2-4Q9BYR9 128 aa6.09□□□□□ -1.43
MSH5-SAPCD1-206ENST00000491552 RPS28P62857 69 aaKnown RBP6.08□□□□□ -1.44
MSH5-SAPCD1-206ENST00000491552 MT1EP04732 61 aa6.05□□□□□ -1.44
MSH5-SAPCD1-206ENST00000491552 K7ERS5 55 aa6.03□□□□□ -1.44
MSH5-SAPCD1-206ENST00000491552 KRTAP19-5Q3LI72 72 aa6.01□□□□□ -1.45
MSH5-SAPCD1-206ENST00000491552 A6NED7 52 aa6□□□□□ -1.45
MSH5-SAPCD1-206ENST00000491552 LCE3AQ5TA76 89 aa5.99□□□□□ -1.45
MSH5-SAPCD1-206ENST00000491552 KRTAP19-3Q7Z4W3 81 aa5.95□□□□□ -1.46
MSH5-SAPCD1-206ENST00000491552 LCE5AQ5TCM9 118 aa5.93□□□□□ -1.46
MSH5-SAPCD1-206ENST00000491552 LCE3BQ5TA77 95 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms