RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 S4R3F8 94 aa9.1□□□□□ -0.95
MCF2L-230ENST00000491028 ACYP2P14621 99 aa9.05□□□□□ -0.96
MCF2L-230ENST00000491028 LCA10Q71F78 164 aa9.04□□□□□ -0.96
MCF2L-230ENST00000491028 KRTAP3-3Q9BYR6 98 aa8.96□□□□□ -0.98
MCF2L-230ENST00000491028 PCP4P48539 62 aa8.95□□□□□ -0.98
MCF2L-230ENST00000491028 KRTAP10-6P60371 365 aaPredicted RBP8.95□□□□□ -0.98
MCF2L-230ENST00000491028 CSAG1Q6PB30 78 aa8.94□□□□□ -0.98
MCF2L-230ENST00000491028 ATP5EP56381 51 aaPredicted RBP8.93□□□□□ -0.98
MCF2L-230ENST00000491028 LCE2DQ5TA82 110 aaPredicted RBP8.93□□□□□ -0.98
MCF2L-230ENST00000491028 LORP23490 312 aaPredicted RBP8.91□□□□□ -0.98
MCF2L-230ENST00000491028 TMEM258P61165 79 aa8.91□□□□□ -0.98
MCF2L-230ENST00000491028 CHKB-CPT1BH3BT56 60 aa8.89□□□□□ -0.99
MCF2L-230ENST00000491028 COA5Q86WW8 74 aa8.85□□□□□ -0.99
MCF2L-230ENST00000491028 SPTSSBQ8NFR3 76 aa8.85□□□□□ -0.99
MCF2L-230ENST00000491028 CRCT1Q9UGL9 99 aa8.83□□□□□ -1
MCF2L-230ENST00000491028 KRTAP9-8Q9BYQ0 159 aa8.81□□□□□ -1
MCF2L-230ENST00000491028 FSIP2Q5CZC0 6907 aa8.8□□□□□ -1
MCF2L-230ENST00000491028 MT2AP02795 61 aa8.76□□□□□ -1.01
MCF2L-230ENST00000491028 H0YAA0 97 aa8.74□□□□□ -1.01
MCF2L-230ENST00000491028 MT1FP04733 61 aa8.69□□□□□ -1.02
MCF2L-230ENST00000491028 KRTAP10-10P60014 251 aa8.66□□□□□ -1.02
MCF2L-230ENST00000491028 ADM2Q7Z4H4 148 aa8.62□□□□□ -1.03
MCF2L-230ENST00000491028 SERP1Q9Y6X1 66 aa8.62□□□□□ -1.03
MCF2L-230ENST00000491028 KRTAP3-2Q9BYR7 98 aa8.53□□□□□ -1.04
MCF2L-230ENST00000491028 KRTAP9-3Q9BYQ3 159 aa8.51□□□□□ -1.05
MCF2L-230ENST00000491028 CRIPTQ9P021 101 aa8.51□□□□□ -1.05
MCF2L-230ENST00000491028 P0C880 135 aa8.5□□□□□ -1.05
MCF2L-230ENST00000491028 SEC61GP60059 68 aa8.48□□□□□ -1.05
MCF2L-230ENST00000491028 RPS28P62857 69 aaKnown RBP8.42□□□□□ -1.06
MCF2L-230ENST00000491028 A0A1B0GU69 56 aa8.4□□□□□ -1.06
MCF2L-230ENST00000491028 SPRR2GQ9BYE4 73 aa8.4□□□□□ -1.06
MCF2L-230ENST00000491028 LINC01558Q9Y6Z2 57 aa8.4□□□□□ -1.06
MCF2L-230ENST00000491028 KRTAP19-1Q8IUB9 90 aa8.39□□□□□ -1.07
MCF2L-230ENST00000491028 R4GN34 69 aa8.37□□□□□ -1.07
MCF2L-230ENST00000491028 PRR15LQ9BU68 103 aa8.35□□□□□ -1.07
MCF2L-230ENST00000491028 SMIM26A0A096LP01 95 aa8.34□□□□□ -1.07
MCF2L-230ENST00000491028 M0QZ58 72 aa8.33□□□□□ -1.08
MCF2L-230ENST00000491028 LCE2BO14633 110 aa8.32□□□□□ -1.08
MCF2L-230ENST00000491028 V9GYY9 64 aa8.32□□□□□ -1.08
MCF2L-230ENST00000491028 Q1T7F1 81 aa8.27□□□□□ -1.09
MCF2L-230ENST00000491028 A0A1B0GU33 70 aa8.26□□□□□ -1.09
MCF2L-230ENST00000491028 KRTAP19-8Q3LI54 63 aa8.25□□□□□ -1.09
MCF2L-230ENST00000491028 KRTAP9-7A8MTY7 169 aa8.23□□□□□ -1.09
MCF2L-230ENST00000491028 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.22□□□□□ -1.09
MCF2L-230ENST00000491028 Q5VV11 94 aa8.21□□□□□ -1.1
MCF2L-230ENST00000491028 USH2AO75445 5202 aa8.2□□□□□ -1.1
MCF2L-230ENST00000491028 KRTAP13-4Q3LI77 160 aa8.19□□□□□ -1.1
MCF2L-230ENST00000491028 LINC01554Q52M75 96 aa8.15□□□□□ -1.1
MCF2L-230ENST00000491028 MT1BP07438 61 aa8.14□□□□□ -1.11
MCF2L-230ENST00000491028 PSPHP1O15172 72 aa8.11□□□□□ -1.11
MCF2L-230ENST00000491028 SPATA8Q6RVD6 105 aa8.11□□□□□ -1.11
MCF2L-230ENST00000491028 SSPOA2VEC9 5147 aa8.09□□□□□ -1.11
MCF2L-230ENST00000491028 UQCR11O14957 56 aa8.08□□□□□ -1.12
MCF2L-230ENST00000491028 A6NN06 94 aa8.07□□□□□ -1.12
MCF2L-230ENST00000491028 PLAC4Q8WY50 150 aa8.03□□□□□ -1.12
MCF2L-230ENST00000491028 A0A0D9SG42 100 aa7.99□□□□□ -1.13
MCF2L-230ENST00000491028 KRTAP19-6Q3LI70 58 aa7.97□□□□□ -1.13
MCF2L-230ENST00000491028 FCGBPQ9Y6R7 5405 aaPredicted RBP7.96□□□□□ -1.14
MCF2L-230ENST00000491028 A8MU10 97 aa7.93□□□□□ -1.14
MCF2L-230ENST00000491028 MIR22HGQ0VDD5 57 aa7.93□□□□□ -1.14
MCF2L-230ENST00000491028 A6NED7 52 aa7.9□□□□□ -1.14
MCF2L-230ENST00000491028 KRTAP12-1P59990 96 aa7.88□□□□□ -1.15
MCF2L-230ENST00000491028 SPINT4Q6UDR6 99 aa7.86□□□□□ -1.15
MCF2L-230ENST00000491028 KRTAP10-5P60370 271 aa7.84□□□□□ -1.15
MCF2L-230ENST00000491028 KRTAP12-2P59991 146 aa7.82□□□□□ -1.16
MCF2L-230ENST00000491028 PRO2289Q9P1D8 64 aa7.81□□□□□ -1.16
MCF2L-230ENST00000491028 MACF1Q9UPN3 7388 aaKnown RBP7.8□□□□□ -1.16
MCF2L-230ENST00000491028 CAMK2N1Q7Z7J9 78 aa7.79□□□□□ -1.16
MCF2L-230ENST00000491028 MT1XP80297 61 aa7.78□□□□□ -1.16
MCF2L-230ENST00000491028 SYNE2Q8WXH0 6885 aaKnown RBP7.77□□□□□ -1.17
MCF2L-230ENST00000491028 CDC42SE1Q9NRR8 79 aa7.71□□□□□ -1.18
MCF2L-230ENST00000491028 K7ERS5 55 aa7.69□□□□□ -1.18
MCF2L-230ENST00000491028 KRTAP6-3Q3LI67 103 aa7.59□□□□□ -1.19
MCF2L-230ENST00000491028 BRK1Q8WUW1 75 aa7.49□□□□□ -1.21
MCF2L-230ENST00000491028 C10orf95Q9H7T3 257 aa7.46□□□□□ -1.22
MCF2L-230ENST00000491028 KRTAP10-7P60409 375 aaPredicted RBP7.43□□□□□ -1.22
MCF2L-230ENST00000491028 KRTAP10-12P60413 245 aa7.41□□□□□ -1.22
MCF2L-230ENST00000491028 TNP1P09430 55 aa7.35□□□□□ -1.23
MCF2L-230ENST00000491028 NEBP20929 6669 aa7.29□□□□□ -1.24
MCF2L-230ENST00000491028 ROMO1P60602 79 aa7.27□□□□□ -1.25
MCF2L-230ENST00000491028 KRTAP25-1Q3LHN0 102 aa7.26□□□□□ -1.25
MCF2L-230ENST00000491028 MUC12Q9UKN1 5478 aa7.23□□□□□ -1.25
MCF2L-230ENST00000491028 KRTAP4-8A0A0G2JLE6 195 aa7.22□□□□□ -1.25
MCF2L-230ENST00000491028 KRTAP4-8Q9BYQ9 185 aa7.22□□□□□ -1.25
MCF2L-230ENST00000491028 KRTAP20-1Q3LI63 56 aa7.19□□□□□ -1.26
MCF2L-230ENST00000491028 KRTAP8-1Q8IUC2 63 aa7.19□□□□□ -1.26
MCF2L-230ENST00000491028 KMT2DO14686 5537 aa7.18□□□□□ -1.26
MCF2L-230ENST00000491028 PRO0628Q9UI54 55 aa7.13□□□□□ -1.27
MCF2L-230ENST00000491028 KRTAP5-9P26371 169 aa7.09□□□□□ -1.27
MCF2L-230ENST00000491028 LCE3AQ5TA76 89 aa7.08□□□□□ -1.28
MCF2L-230ENST00000491028 PMAIP1Q13794 54 aa7.07□□□□□ -1.28
MCF2L-230ENST00000491028 KRTAP23-1A1A580 65 aa7.04□□□□□ -1.28
MCF2L-230ENST00000491028 SPRR2FQ96RM1 72 aa7.01□□□□□ -1.29
MCF2L-230ENST00000491028 KRTAP19-7Q3SYF9 63 aa6.95□□□□□ -1.3
MCF2L-230ENST00000491028 MDN1Q9NU22 5596 aa6.94□□□□□ -1.3
MCF2L-230ENST00000491028 KRTAP2-3P0C7H8 128 aa6.93□□□□□ -1.3
MCF2L-230ENST00000491028 PP632Q6XCG6 107 aa6.93□□□□□ -1.3
MCF2L-230ENST00000491028 KRTAP2-4Q9BYR9 128 aa6.93□□□□□ -1.3
MCF2L-230ENST00000491028 KRTAP19-5Q3LI72 72 aa6.92□□□□□ -1.3
MCF2L-230ENST00000491028 MT1EP04732 61 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms