RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 KRTAP4-1Q9BYQ7 146 aa10.25□□□□□ -0.77
CCM2-216ENST00000488727 C7orf65Q6ZTY9 151 aa10.24□□□□□ -0.77
CCM2-216ENST00000488727 ATP11AUNQ6ZP68 121 aa10.19□□□□□ -0.78
CCM2-216ENST00000488727 CHKB-CPT1BH3BT56 60 aa10.17□□□□□ -0.78
CCM2-216ENST00000488727 A6NED7 52 aa10.02□□□□□ -0.8
CCM2-216ENST00000488727 SPINK7P58062 85 aa9.96□□□□□ -0.81
CCM2-216ENST00000488727 CDC42SE1Q9NRR8 79 aa9.96□□□□□ -0.81
CCM2-216ENST00000488727 FAT4Q6V0I7 4981 aa9.96□□□□□ -0.82
CCM2-216ENST00000488727 LCA10Q71F78 164 aa9.96□□□□□ -0.82
CCM2-216ENST00000488727 A8MU10 97 aa9.93□□□□□ -0.82
CCM2-216ENST00000488727 KRTAP19-2Q3LHN2 52 aa9.93□□□□□ -0.82
CCM2-216ENST00000488727 A0A1B0GU69 56 aa9.93□□□□□ -0.82
CCM2-216ENST00000488727 KRTAP3-1Q9BYR8 98 aa9.88□□□□□ -0.83
CCM2-216ENST00000488727 LCE2CQ5TA81 110 aa9.87□□□□□ -0.83
CCM2-216ENST00000488727 SPTSSBQ8NFR3 76 aa9.87□□□□□ -0.83
CCM2-216ENST00000488727 COX6B2Q6YFQ2 88 aa9.83□□□□□ -0.84
CCM2-216ENST00000488727 LCE2AQ5TA79 106 aaPredicted RBP9.78□□□□□ -0.84
CCM2-216ENST00000488727 UQCR11O14957 56 aa9.73□□□□□ -0.85
CCM2-216ENST00000488727 PMAIP1Q13794 54 aa9.73□□□□□ -0.85
CCM2-216ENST00000488727 SPATA8Q6RVD6 105 aa9.73□□□□□ -0.85
CCM2-216ENST00000488727 SEC61GP60059 68 aa9.71□□□□□ -0.85
CCM2-216ENST00000488727 MT1HP80294 61 aa9.7□□□□□ -0.86
CCM2-216ENST00000488727 RBM12B-AS1Q9P1G2 102 aa9.7□□□□□ -0.86
CCM2-216ENST00000488727 A6NN06 94 aa9.67□□□□□ -0.86
CCM2-216ENST00000488727 MIR22HGQ0VDD5 57 aa9.65□□□□□ -0.86
CCM2-216ENST00000488727 FLGP20930 4061 aaPredicted RBP9.64□□□□□ -0.87
CCM2-216ENST00000488727 KTN1-AS1Q86SY8 53 aa9.52□□□□□ -0.89
CCM2-216ENST00000488727 M0R2T5 61 aa9.51□□□□□ -0.89
CCM2-216ENST00000488727 KRTAP3-3Q9BYR6 98 aa9.51□□□□□ -0.89
CCM2-216ENST00000488727 H1FX-AS1Q4G0G2 97 aa9.48□□□□□ -0.89
CCM2-216ENST00000488727 A0A1B0GU33 70 aa9.48□□□□□ -0.89
CCM2-216ENST00000488727 S4R3F8 94 aa9.48□□□□□ -0.89
CCM2-216ENST00000488727 H0YAA0 97 aa9.44□□□□□ -0.9
CCM2-216ENST00000488727 KRTAP10-6P60371 365 aaPredicted RBP9.43□□□□□ -0.9
CCM2-216ENST00000488727 LORP23490 312 aaPredicted RBP9.41□□□□□ -0.9
CCM2-216ENST00000488727 KRTAP3-2Q9BYR7 98 aa9.3□□□□□ -0.92
CCM2-216ENST00000488727 KRTAP9-8Q9BYQ0 159 aa9.26□□□□□ -0.93
CCM2-216ENST00000488727 CSAG1Q6PB30 78 aa9.18□□□□□ -0.94
CCM2-216ENST00000488727 MT2AP02795 61 aa9.17□□□□□ -0.94
CCM2-216ENST00000488727 P0C880 135 aa9.14□□□□□ -0.95
CCM2-216ENST00000488727 KRTAP13-4Q3LI77 160 aa9.14□□□□□ -0.95
CCM2-216ENST00000488727 MT1FP04733 61 aa9.11□□□□□ -0.95
CCM2-216ENST00000488727 K7ERS5 55 aa9.11□□□□□ -0.95
CCM2-216ENST00000488727 ADM2Q7Z4H4 148 aa9.11□□□□□ -0.95
CCM2-216ENST00000488727 PRAC1Q96KF2 57 aa9.08□□□□□ -0.96
CCM2-216ENST00000488727 KRTAP9-2Q9BYQ4 174 aa9.07□□□□□ -0.96
CCM2-216ENST00000488727 LCE2DQ5TA82 110 aaPredicted RBP9.06□□□□□ -0.96
CCM2-216ENST00000488727 KRTAP10-10P60014 251 aa9.05□□□□□ -0.96
CCM2-216ENST00000488727 A0A0D9SG42 100 aa8.97□□□□□ -0.97
CCM2-216ENST00000488727 M0QZ58 72 aa8.96□□□□□ -0.98
CCM2-216ENST00000488727 KRTAP9-3Q9BYQ3 159 aa8.95□□□□□ -0.98
CCM2-216ENST00000488727 ROMO1P60602 79 aa8.84□□□□□ -0.99
CCM2-216ENST00000488727 KRTAP12-1P59990 96 aa8.82□□□□□ -1
CCM2-216ENST00000488727 LCE2BO14633 110 aa8.81□□□□□ -1
CCM2-216ENST00000488727 KRTAP12-2P59991 146 aa8.81□□□□□ -1
CCM2-216ENST00000488727 FSIP2Q5CZC0 6907 aa8.79□□□□□ -1
CCM2-216ENST00000488727 KRTAP25-1Q3LHN0 102 aa8.77□□□□□ -1
CCM2-216ENST00000488727 LINC01554Q52M75 96 aa8.74□□□□□ -1.01
CCM2-216ENST00000488727 R4GN34 69 aa8.73□□□□□ -1.01
CCM2-216ENST00000488727 USH2AO75445 5202 aa8.73□□□□□ -1.01
CCM2-216ENST00000488727 KRTAP19-1Q8IUB9 90 aa8.72□□□□□ -1.01
CCM2-216ENST00000488727 SPINT4Q6UDR6 99 aa8.71□□□□□ -1.01
CCM2-216ENST00000488727 SPRR2GQ9BYE4 73 aa8.66□□□□□ -1.02
CCM2-216ENST00000488727 CRIPTQ9P021 101 aa8.65□□□□□ -1.03
CCM2-216ENST00000488727 CRCT1Q9UGL9 99 aa8.64□□□□□ -1.03
CCM2-216ENST00000488727 KRTAP9-6A0A140TA67 174 aa8.58□□□□□ -1.04
CCM2-216ENST00000488727 SSPOA2VEC9 5147 aa8.57□□□□□ -1.04
CCM2-216ENST00000488727 KRTAP19-8Q3LI54 63 aa8.53□□□□□ -1.04
CCM2-216ENST00000488727 MT1BP07438 61 aa8.49□□□□□ -1.05
CCM2-216ENST00000488727 KRTAP19-6Q3LI70 58 aa8.4□□□□□ -1.07
CCM2-216ENST00000488727 C10orf95Q9H7T3 257 aa8.39□□□□□ -1.07
CCM2-216ENST00000488727 FCGBPQ9Y6R7 5405 aaPredicted RBP8.29□□□□□ -1.08
CCM2-216ENST00000488727 CAMK2N1Q7Z7J9 78 aa8.23□□□□□ -1.09
CCM2-216ENST00000488727 PLAC4Q8WY50 150 aa8.2□□□□□ -1.1
CCM2-216ENST00000488727 KRTAP10-5P60370 271 aa8.17□□□□□ -1.1
CCM2-216ENST00000488727 MT1XP80297 61 aa8.08□□□□□ -1.12
CCM2-216ENST00000488727 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.03□□□□□ -1.12
CCM2-216ENST00000488727 PP632Q6XCG6 107 aa8.02□□□□□ -1.13
CCM2-216ENST00000488727 PRO2289Q9P1D8 64 aa8□□□□□ -1.13
CCM2-216ENST00000488727 MACF1Q9UPN3 7388 aaKnown RBP7.96□□□□□ -1.14
CCM2-216ENST00000488727 TNP1P09430 55 aa7.94□□□□□ -1.14
CCM2-216ENST00000488727 KRTAP15-1Q3LI76 137 aa7.92□□□□□ -1.14
CCM2-216ENST00000488727 KRTAP23-1A1A580 65 aa7.91□□□□□ -1.14
CCM2-216ENST00000488727 SYNE2Q8WXH0 6885 aaKnown RBP7.81□□□□□ -1.16
CCM2-216ENST00000488727 KRTAP9-7A8MTY7 169 aa7.78□□□□□ -1.16
CCM2-216ENST00000488727 KRTAP10-7P60409 375 aaPredicted RBP7.73□□□□□ -1.17
CCM2-216ENST00000488727 KRTAP10-12P60413 245 aa7.66□□□□□ -1.18
CCM2-216ENST00000488727 KMT2DO14686 5537 aa7.66□□□□□ -1.18
CCM2-216ENST00000488727 KRTAP6-3Q3LI67 103 aa7.64□□□□□ -1.19
CCM2-216ENST00000488727 KRTAP4-8A0A0G2JLE6 195 aa7.6□□□□□ -1.19
CCM2-216ENST00000488727 KRTAP4-8Q9BYQ9 185 aa7.6□□□□□ -1.19
CCM2-216ENST00000488727 LCE3AQ5TA76 89 aa7.52□□□□□ -1.2
CCM2-216ENST00000488727 KRTAP5-9P26371 169 aa7.52□□□□□ -1.21
CCM2-216ENST00000488727 KRTAP8-1Q8IUC2 63 aa7.52□□□□□ -1.21
CCM2-216ENST00000488727 NDUFAF8A1L188 74 aa7.48□□□□□ -1.21
CCM2-216ENST00000488727 H3BS24 57 aa7.41□□□□□ -1.22
CCM2-216ENST00000488727 SPRR2FQ96RM1 72 aa7.41□□□□□ -1.22
CCM2-216ENST00000488727 MUC12Q9UKN1 5478 aa7.38□□□□□ -1.23
CCM2-216ENST00000488727 SPRR5A0A1B0GTR4 108 aa7.36□□□□□ -1.23
CCM2-216ENST00000488727 LUZP6Q538Z0 58 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms