RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 KRTAP9-7A8MTY7 169 aa7.12□□□□□ -1.27
HMGA1-206ENST00000478214 SCGB1A1P11684 91 aa7.1□□□□□ -1.27
HMGA1-206ENST00000478214 KRTAP19-6Q3LI70 58 aa7.1□□□□□ -1.27
HMGA1-206ENST00000478214 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.08□□□□□ -1.28
HMGA1-206ENST00000478214 A8MUN3 132 aa7.07□□□□□ -1.28
HMGA1-206ENST00000478214 K7ERU9 68 aa7.07□□□□□ -1.28
HMGA1-206ENST00000478214 MT-ATP8P03928 68 aa7.07□□□□□ -1.28
HMGA1-206ENST00000478214 H3BPC8 53 aa7.05□□□□□ -1.28
HMGA1-206ENST00000478214 NDUFC1O43677 76 aa7.05□□□□□ -1.28
HMGA1-206ENST00000478214 IMUPQ9GZP8 106 aa7.04□□□□□ -1.28
HMGA1-206ENST00000478214 SPRR2GQ9BYE4 73 aa7.01□□□□□ -1.29
HMGA1-206ENST00000478214 MT1BP07438 61 aa6.96□□□□□ -1.3
HMGA1-206ENST00000478214 H0YAA0 97 aa6.95□□□□□ -1.3
HMGA1-206ENST00000478214 KRTAP19-8Q3LI54 63 aa6.95□□□□□ -1.3
HMGA1-206ENST00000478214 Q5VV11 94 aa6.94□□□□□ -1.3
HMGA1-206ENST00000478214 TRAV7A0A075B6U4 112 aa6.93□□□□□ -1.3
HMGA1-206ENST00000478214 DMAC1Q96GE9 116 aa6.93□□□□□ -1.3
HMGA1-206ENST00000478214 MACF1Q9UPN3 7388 aaKnown RBP6.93□□□□□ -1.3
HMGA1-206ENST00000478214 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
HMGA1-206ENST00000478214 SMIM20Q8N5G0 67 aa6.91□□□□□ -1.3
HMGA1-206ENST00000478214 ADM2Q7Z4H4 148 aa6.9□□□□□ -1.3
HMGA1-206ENST00000478214 A6NN06 94 aa6.82□□□□□ -1.32
HMGA1-206ENST00000478214 SYNE2Q8WXH0 6885 aaKnown RBP6.82□□□□□ -1.32
HMGA1-206ENST00000478214 SNURFQ9Y675 71 aa6.8□□□□□ -1.32
HMGA1-206ENST00000478214 ACYP2P14621 99 aa6.78□□□□□ -1.32
HMGA1-206ENST00000478214 P0C880 135 aa6.77□□□□□ -1.33
HMGA1-206ENST00000478214 KRTAP10-5P60370 271 aa6.76□□□□□ -1.33
HMGA1-206ENST00000478214 C20orf197Q8N268 126 aa6.73□□□□□ -1.33
HMGA1-206ENST00000478214 SERP2Q8N6R1 65 aa6.73□□□□□ -1.33
HMGA1-206ENST00000478214 KRTAP3-2Q9BYR7 98 aa6.73□□□□□ -1.33
HMGA1-206ENST00000478214 R4GN34 69 aa6.7□□□□□ -1.34
HMGA1-206ENST00000478214 CHKB-CPT1BH3BT56 60 aa6.66□□□□□ -1.34
HMGA1-206ENST00000478214 M0QZ58 72 aa6.66□□□□□ -1.34
HMGA1-206ENST00000478214 SPANXA2-OT1Q8N9U9 137 aa6.66□□□□□ -1.34
HMGA1-206ENST00000478214 SPTSSBQ8NFR3 76 aa6.66□□□□□ -1.34
HMGA1-206ENST00000478214 KRTAP6-3Q3LI67 103 aa6.65□□□□□ -1.34
HMGA1-206ENST00000478214 PLAC4Q8WY50 150 aa6.6□□□□□ -1.35
HMGA1-206ENST00000478214 LINC01554Q52M75 96 aa6.58□□□□□ -1.36
HMGA1-206ENST00000478214 COX7CP15954 63 aa6.56□□□□□ -1.36
HMGA1-206ENST00000478214 MT1XP80297 61 aa6.55□□□□□ -1.36
HMGA1-206ENST00000478214 PRO2289Q9P1D8 64 aa6.53□□□□□ -1.36
HMGA1-206ENST00000478214 COA5Q86WW8 74 aa6.48□□□□□ -1.37
HMGA1-206ENST00000478214 MUC12Q9UKN1 5478 aa6.47□□□□□ -1.37
HMGA1-206ENST00000478214 CYSTM1Q9H1C7 97 aa6.47□□□□□ -1.37
HMGA1-206ENST00000478214 KMT2DO14686 5537 aa6.45□□□□□ -1.38
HMGA1-206ENST00000478214 H7BZZ5 65 aa6.44□□□□□ -1.38
HMGA1-206ENST00000478214 NEBP20929 6669 aa6.43□□□□□ -1.38
HMGA1-206ENST00000478214 KRTAP5-9P26371 169 aa6.4□□□□□ -1.38
HMGA1-206ENST00000478214 KRTAP13-4Q3LI77 160 aa6.38□□□□□ -1.39
HMGA1-206ENST00000478214 ANAPC13Q9BS18 74 aa6.38□□□□□ -1.39
HMGA1-206ENST00000478214 MDN1Q9NU22 5596 aa6.37□□□□□ -1.39
HMGA1-206ENST00000478214 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
HMGA1-206ENST00000478214 SEC61GP60059 68 aa6.3□□□□□ -1.4
HMGA1-206ENST00000478214 SERP1Q9Y6X1 66 aa6.29□□□□□ -1.4
HMGA1-206ENST00000478214 CCDC179H3BU77 68 aa6.28□□□□□ -1.4
HMGA1-206ENST00000478214 KRTAP8-1Q8IUC2 63 aa6.27□□□□□ -1.41
HMGA1-206ENST00000478214 KRTAP10-7P60409 375 aaPredicted RBP6.26□□□□□ -1.41
HMGA1-206ENST00000478214 SPRR2FQ96RM1 72 aa6.25□□□□□ -1.41
HMGA1-206ENST00000478214 KRTAP4-8A0A0G2JLE6 195 aa6.24□□□□□ -1.41
HMGA1-206ENST00000478214 KRTAP4-8Q9BYQ9 185 aa6.24□□□□□ -1.41
HMGA1-206ENST00000478214 KRTAP10-12P60413 245 aa6.21□□□□□ -1.42
HMGA1-206ENST00000478214 A0A0D9SG42 100 aa6.2□□□□□ -1.42
HMGA1-206ENST00000478214 A0A1B0GU33 70 aa6.2□□□□□ -1.42
HMGA1-206ENST00000478214 SPATA8Q6RVD6 105 aa6.2□□□□□ -1.42
HMGA1-206ENST00000478214 KRTAP20-1Q3LI63 56 aa6.19□□□□□ -1.42
HMGA1-206ENST00000478214 CAMK2N1Q7Z7J9 78 aa6.18□□□□□ -1.42
HMGA1-206ENST00000478214 A0A1B0GU69 56 aa6.13□□□□□ -1.43
HMGA1-206ENST00000478214 SPRR2EP22531 72 aa6.13□□□□□ -1.43
HMGA1-206ENST00000478214 SPRR2BP35325 72 aa6.13□□□□□ -1.43
HMGA1-206ENST00000478214 SPRR2AP35326 72 aa6.13□□□□□ -1.43
HMGA1-206ENST00000478214 ATP5EP56381 51 aaPredicted RBP6.13□□□□□ -1.43
HMGA1-206ENST00000478214 SPINT4Q6UDR6 99 aa6.09□□□□□ -1.43
HMGA1-206ENST00000478214 KRTAP12-1P59990 96 aa6.07□□□□□ -1.44
HMGA1-206ENST00000478214 LCE1AQ5T7P2 110 aa6.07□□□□□ -1.44
HMGA1-206ENST00000478214 SMIM26A0A096LP01 95 aa6.02□□□□□ -1.45
HMGA1-206ENST00000478214 TMEM258P61165 79 aa6.01□□□□□ -1.45
HMGA1-206ENST00000478214 A8MU10 97 aa6□□□□□ -1.45
HMGA1-206ENST00000478214 KRTAP2-3P0C7H8 128 aa5.98□□□□□ -1.45
HMGA1-206ENST00000478214 KRTAP2-4Q9BYR9 128 aa5.98□□□□□ -1.45
HMGA1-206ENST00000478214 PRR15LQ9BU68 103 aa5.97□□□□□ -1.45
HMGA1-206ENST00000478214 LINC01558Q9Y6Z2 57 aa5.96□□□□□ -1.46
HMGA1-206ENST00000478214 SPRR2DP22532 72 aa5.92□□□□□ -1.46
HMGA1-206ENST00000478214 KRTAP19-7Q3SYF9 63 aa5.86□□□□□ -1.47
HMGA1-206ENST00000478214 MT1EP04732 61 aa5.8□□□□□ -1.48
HMGA1-206ENST00000478214 C10orf95Q9H7T3 257 aa5.8□□□□□ -1.48
HMGA1-206ENST00000478214 UQCR11O14957 56 aa5.79□□□□□ -1.48
HMGA1-206ENST00000478214 KRTAP2-2Q9BYT5 123 aa5.79□□□□□ -1.48
HMGA1-206ENST00000478214 KRTAP2-1Q9BYU5 128 aa5.79□□□□□ -1.48
HMGA1-206ENST00000478214 KRTAP19-5Q3LI72 72 aa5.75□□□□□ -1.49
HMGA1-206ENST00000478214 LCE3BQ5TA77 95 aa5.75□□□□□ -1.49
HMGA1-206ENST00000478214 TNP1P09430 55 aa5.72□□□□□ -1.49
HMGA1-206ENST00000478214 LCE5AQ5TCM9 118 aa5.71□□□□□ -1.5
HMGA1-206ENST00000478214 KRTAP19-3Q7Z4W3 81 aa5.71□□□□□ -1.5
HMGA1-206ENST00000478214 MIR22HGQ0VDD5 57 aa5.68□□□□□ -1.5
HMGA1-206ENST00000478214 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
HMGA1-206ENST00000478214 PSPHP1O15172 72 aa5.66□□□□□ -1.5
HMGA1-206ENST00000478214 V9GYY9 64 aa5.65□□□□□ -1.5
HMGA1-206ENST00000478214 Q1T7F1 81 aa5.64□□□□□ -1.51
HMGA1-206ENST00000478214 DSTQ03001 7570 aaKnown RBP5.62□□□□□ -1.51
HMGA1-206ENST00000478214 MT1GP13640 62 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms